Array 1 247658-240025 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJH010000005.1 Aquisphaera sp. JC669 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 247657 37 100.0 35 ..................................... CTTCTGGGAGCGGGCCGAGATCGCGAAGCATGCTG 247585 37 100.0 36 ..................................... TCGATCTCCCAGCGGTCCCACGCGGCCTGGCACGTC 247512 37 100.0 35 ..................................... TCTCCGCCAGTACCGCCGGCACGGCCTGTTACGAG 247440 37 100.0 36 ..................................... GCTGACGACGAGGAACTCGGCAAACTTCCAGCCGAA 247367 37 100.0 39 ..................................... GTTGCTCTCGGCATGGCTGCGGTGTTGTCTGCCATGTCC 247291 37 100.0 36 ..................................... CCAGCATTCCGACTTGAGCCGCGAGATTGGTTCCCT 247218 37 100.0 37 ..................................... TCGGCTGGGTCGACGCCTCCTACGTCTACCTCGAGCC 247144 37 100.0 35 ..................................... GCATTCCTTCCGGATGGAGGGAGAGCCACTCTTGC 247072 37 100.0 36 ..................................... GGCCGACCTGGTCCAGGTCGCGCAGACGCCCCCGCC 246999 37 100.0 37 ..................................... CGCCCTTCCGCTTGAGGGACGCCCTGACGCTCTTGGA 246925 37 100.0 35 ..................................... AACGTGGCGACGGTGCACCTGGGGGCGAACGATGC 246853 37 100.0 36 ..................................... CTCTCTGGTCCGGTCGACGATCGCCTGTGTCGACAG 246780 37 100.0 36 ..................................... GGAGATGGCGAAGAAGACGGTCATCAAGAGGCACAG 246707 37 100.0 37 ..................................... CATCTCGGCGGTCGGACCATCCCCACGCGTGTGGGGA 246633 37 100.0 36 ..................................... ACCCGTCGCCAGGGCATACTGCGCCGCCTGCGTGAA 246560 37 100.0 36 ..................................... CTGGTGGGTGCCCCACTGGCTGATCTGGCCGCGATG 246487 37 100.0 37 ..................................... TGTAGGTCTCATCCGCCGGGACTGGCTTGCCATCTCG 246413 37 100.0 35 ..................................... CGCAGTCTCGCCGAGATGGCCGTGGCCGATGCGAA 246341 37 100.0 36 ..................................... CACCCCGACCTCGGAGGCCCTCGCCCCGGTCGCCAG 246268 37 100.0 37 ..................................... ACGGCGTCGCCGACCTGGCGATCCCGCTGAGCGTCAC 246194 37 100.0 35 ..................................... ACGAAGAGGCTGCGATCCTCCGCATCGCGATCGAC 246122 37 100.0 37 ..................................... GCTGGACGATGCTCTGCCCGTTCACCGCCAAGCCGTT 246048 37 100.0 36 ..................................... CGAGGTCCAGCCCCGGCGGTTCCCGCGGACGCTTTC 245975 37 100.0 35 ..................................... GTGACGTCTCCCGTCTCCATCACCCGCGGCCGAGG 245903 37 100.0 36 ..................................... CGGCTATCCCCCCAGCTCGTCGTCGATCCCCGTCAC 245830 37 100.0 35 ..................................... GGCGTAGGCTGCGGCGGCCCGGTCGATAGCCTCAC 245758 37 100.0 37 ..................................... GACCGATCAGACCGATCAGGCCAGGACCTACGCGAAG 245684 37 100.0 36 ..................................... GAGCGACATCCTGGCCAATTTCTCCGGGGCGACGAG 245611 37 100.0 36 ..................................... GATCTCGGGCGTGTTGCCGCACTCCGAGACCGACGA 245538 37 100.0 36 ..................................... GACTGGGTCACCGAGACATGGGGCGCGTCATGCGGC 245465 37 100.0 36 ..................................... GGCCGATCGCCGCGAGCCAGGTCACGCGTCGGGGCC 245392 37 100.0 36 ..................................... GTTGATGGTATCCCCGTCCCCATTGCCGTTGCCCAA 245319 37 100.0 36 ..................................... CGCAGCGCTAATCGCCGAGTACACCAGCTCGCCAAC 245246 37 100.0 37 ..................................... AGGCGAAGCTCGATCTCGAGACGCGGCTGGCGGAGCT 245172 37 100.0 36 ..................................... GTTGCCGCTGTTGGCACTCACGTTGCCGGCGGCGGT 245099 37 100.0 36 ..................................... CCTCGGGGCGCTCACCGCCTCGCAGCAGACCATCCT 245026 37 100.0 35 ..................................... TACACGAAGCCGCATGGGTCGCCGTGGCCAGGCAC 244954 37 100.0 36 ..................................... GTTCCGGGACGTGATGGCCGGCCCGAGATGGCGGAG 244881 37 100.0 36 ..................................... AGCTCGCAGCACGTCCTCGATCACGGCGCCCTGTTC 244808 37 100.0 37 ..................................... GGCATTCGGCCGGGAGGCGCTTTCCTGCGACGACCGG 244734 37 100.0 37 ..................................... ACAGTGAAATACGAGGTTGCGGTAACTCACGACACGA 244660 37 100.0 36 ..................................... CCGCAAGCAGGCCCACCAGGCCGATCCTCCTCCCGA 244587 37 100.0 36 ..................................... GCTGAGGCCGAAGGCATCGGCCAGGTCGGAGACGAG 244514 37 100.0 36 ..................................... ACGCCGCCTGGGTTCGCATTGTGCCAGGTCGGTTTC 244441 37 100.0 36 ..................................... GATGGTGACCGCCAGGAGCTCATGGAGCTCGCGGCG 244368 37 100.0 36 ..................................... CCACAGGTCGGTGGTCTTCGATGCGTTGTTGCATAC 244295 37 100.0 36 ..................................... TGGGGCATCGTCGCGGCGGATCGCCACGACGACGGG 244222 37 100.0 36 ..................................... CCAGACGCGAGAGAAGCAGGGGCTGGACCAGACACG 244149 37 100.0 36 ..................................... CAAGAAAAAGACCGCGGCCCTTGCGGCCTCGCGGAA 244076 37 100.0 36 ..................................... CTGGTCCTGACCGTAAGTCGTCTGTGCCGAGCTGTT 244003 37 100.0 38 ..................................... GTCTTGTCCCGCGAGAATGCCGGGTCGAGGAAGACGGG 243928 37 100.0 35 ..................................... CTTTCGGTCGCTGGAGACGCGGTCTATTCGATCAA 243856 37 100.0 35 ..................................... GACCATCGGGCGGCCCGTGTTCACGCCCTCGCCCT 243784 37 100.0 37 ..................................... TCGCCGCACGGGTCAGCCGCGAGACCTATGAGACCTG 243710 37 100.0 35 ..................................... ATCGAGGATCTCGATGGGGGCCGTATGACCCTGGC 243638 37 100.0 35 ..................................... CGGCCTGGATCTTCTGCTCCTTGGCCGCCAGCTCG 243566 37 100.0 35 ..................................... CGCTGAACCTCGCGGACTCCGGCAACACGAACAGA 243494 37 100.0 37 ..................................... CTCCAGCAGGTCCACGGGGGTGCGGCATGAGTCGATT 243420 37 100.0 38 ..................................... CAGGTCGCTCGTCGTCAGCTCCACCGCGGCCGTGGATC 243345 37 100.0 36 ..................................... CGGCCGGTCCAGAGGGCAGGGGACCGCTACACCGTG 243272 37 100.0 35 ..................................... CCTTGCGGGGTTGCTTCAGGCGGCCGGGCGTGATG 243200 37 100.0 36 ..................................... CCAGCGACGGTGGAACGTCCAGGTCTCGGCCAACTT 243127 37 100.0 36 ..................................... TCTCGTACCGGAGAAGTGGTCGCGACGGATCCTCCG 243054 37 100.0 35 ..................................... TATCTTGGACGGGCACGGGTTGCCGGGCGGGTTCG 242982 37 100.0 35 ..................................... CCGGGCAGCTTCCGCCGCCTGATCCGCAGCATGCG 242910 37 100.0 35 ..................................... TTCAATTTGAAGTCCGGGCACTCTCCCGACTCGAT 242838 37 100.0 37 ..................................... ACACGACGATCCGTCCGGTGTGCGGCGAATGGACCGT 242764 37 100.0 45 ..................................... TGCCCGTCGGCGAGGACGACGGCCGCCCCCTCGGAAATGGACCGT 242682 37 100.0 36 ..................................... CCGCATGGTCGGCGGGGAAGTCCGCGACCTCACGGC 242609 37 100.0 36 ..................................... GGCATCCACCACGACATGGCGGGCATCCTGACCGAT 242536 37 100.0 35 ..................................... AGCGGCTTGCAGTGGACTTCGGGGTCGAACGTGTC 242464 37 100.0 37 ..................................... CCCGCAAGGGCGAGAAGATGCTCCGCGGCGAGGACGT 242390 37 100.0 37 ..................................... TGCAGCCCGTCCACCGCTTCGTGCGGAGGGTCCCGTC 242316 37 100.0 35 ..................................... CTGCCGGCCCCTTCCCGAAGGTGTTGCACCTGGAT 242244 37 100.0 38 ..................................... GGCCCGCCCACACCACCGACCGCCGCCCCTGCGACGCC 242169 37 100.0 35 ..................................... CGCCGACCTGCCCGGCGATCTCAGTCGCCGACAGG 242097 37 100.0 35 ..................................... CTCGCGGGCCTCGGTTCCGTCCAGGTCGATCACCA 242025 37 100.0 38 ..................................... TCAATCCGCGAGATCGAGCGATGGGACACGGCGATCCT 241950 37 100.0 36 ..................................... GTGAACCCGCGCAAAGAGTTGTGTGTGGCATCGCGT 241877 37 100.0 35 ..................................... ATCGTCTATCTGGGCAATCCGCTCAGGCCCGAGGG 241805 37 100.0 37 ..................................... TGGCGTTGCTCGTCCTGGCCTCGTCGGAGCTGGAGCG 241731 37 100.0 37 ..................................... CAGCGAGTCCACCTGGGCAATGCCGGGCAAGAGGAGC 241657 37 100.0 37 ..................................... CGCTCGCCCCGCGGTTCCAGTTCAGCCGCGTTATCAG 241583 37 100.0 35 ..................................... ACGAGCGACGCCGTTCGTCTCGCCGCCCTGTCACG 241511 37 100.0 34 ..................................... TCAGGCCGAAGAGAGGTCGATGAACCACCTGCGA 241440 37 100.0 36 ..................................... TGTCCAGTGCCGCAAATCGCCGCAAGAACCCGGGGA 241367 37 100.0 35 ..................................... CACCCCGTCGCAGGTGAGCCGGCGCGGTCCGGTGC 241295 37 100.0 35 ..................................... GGGTATCTCCAGCGGTCCACGGCCAAGAGCCACCA 241223 37 100.0 37 ..................................... ACGCGGCCTGGCACGTCGGACAGTACGCAGCGCTGGA 241149 37 100.0 36 ..................................... ACGTCTGGGGGCTCGGTTCCAAGCCCAACACGGAAA 241076 37 100.0 36 ..................................... AGCACCTGCGACGTGGTGGGGAGGGCGAGGGTGCCG 241003 37 100.0 36 ..................................... ACCGTTCCGGCTGACGGCTTGGCCGTGGGTCCCTCG 240930 37 100.0 36 ..................................... CTCAGTGAAGTCGACGTAGTAAGTCTGGCCAGGCCG 240857 37 100.0 36 ..................................... TCGGGCCAGTAACGCCAGCGGACGACGTTGTCAATG 240784 37 100.0 36 ..................................... TCCAGCTTCAGGGTCGGGACGTGCGGGCCGCGGACT 240711 37 100.0 35 ..................................... ATCGAGCCGGCGACGTTGGTGATCAAGGTTCCGTT 240639 37 100.0 37 ..................................... CACCTACTCGGTCGCGACGCCTGGCGCGACCACGATT 240565 37 100.0 35 ..................................... AGCCGCTGGCACGTCGTCAACGCCCGCGACGACTT 240493 37 100.0 35 ..................................... TCGCCATCTTGGCGTCGTTGTGCGTGGCCGTGAAG 240421 37 100.0 36 ..................................... GAGAGCACCGCTCGGTCGGGCGGGGTCGTCGTCAGC 240348 37 100.0 32 ..................................... ATCAACGGCCGTCATCGGGCGAAGGTCAACTG 240279 37 100.0 36 ..................................... GAGATCGACCGCGTCCTGATGGGATTCGACGCCCCA 240206 37 100.0 35 ..................................... GGGCTCAGCTGGTGCTGGTTGGCCGTGTCGTAGAC 240134 37 100.0 36 ..................................... AGGGGCAGGAGGAAGAACACTGCCGAGTTGCGGGCA 240061 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 105 37 100.0 36 GCTTCAATGAGGCCGGGGCGATGATGCCCCGGAAGAC # Left flank : TCAGACACTGGTTAGAATACTCGTCAGACTAGT # Right flank : GGCCGGCGTCTGAGGTGACGTCGGGGGTTGGAGATACGGTTGAGCTCGCGAGAGGTCGCGATGACGAAGGGGAATCGAGGGGACTTCGATGAGGAGCCGATGGCGAAACTCCTTGCGTATGAACGAGATCCAACTCGCGAGAGGTTTTCTGGAGTGAATTGCTCCCTAACATCCATATTGCCAAAGAGCTTTGGGCTCGGACAGGGCTTGATCCGCGTTTTCACCACCGCGATGCTCGCGAGGGAATTTGCGGGCGAGGAATCAGTGCAGTTAGCCCAAGGCGCCGCGATTCAGATGGCGTCAGGTCAGGCAGCGAGGAGGCGTGAAATTGGGGGTCTTCTCGACCAGGATCCGACGAGTCCGGTAGACGGCGACGATCCCACGAGACCTGAGGCTCGAGCGGTCGTCGCGATCGAATTCGGGTTGCTGAAGGATCGTCAATCCGAGCATCGAGACGATCGGATCGATCGAGAGCGAGCCCGACCAGATGGGCCAGGTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCGATGATGCCCCGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 6078-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJH010000148.1 Aquisphaera sp. JC669 148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6077 37 70.3 15 ...C.CC..........AA.GC...C.A.A...C... CTTTGCCCCCTCCAC Deletion [6026] 6025 37 89.2 36 A...G.................C.C............ TCCGACGTCGGACACCCAGGCGAACGTCAACAACGC 5952 37 100.0 37 ..................................... GCTGCTCGGGGGCGATGCTCCGCCGCGACTCGCGGGC 5878 37 100.0 36 ..................................... AGAGGAGGCCGCGCCGTGAGGCTCTACCGCTCCTAC 5805 37 100.0 35 ..................................... GTTCTACCAGGACTACTGACCCTTCCCCTTCCCGG 5733 37 100.0 35 ..................................... ACGATGACGGCCGACTCGTCCACGATCTACGCCTG 5661 37 100.0 34 ..................................... GATAATCGCAGCAAAAGGAGGGGCGGCCTGCGGG 5590 37 100.0 37 ..................................... AGGCTAGGCCGATGAACTTGGCGTCATTGCGGAGTTC 5516 37 100.0 35 ..................................... AAGAATGCTCTGACGAAGACGGGCTCCGCCCTCGA 5444 37 100.0 37 ..................................... ATGGGCCCCCGAGGGGAGCGGCAAGGATGCCGAAGCC 5370 37 100.0 36 ..................................... GCCGCTGTCGAAGTCCGCCCAGGTCCGCATGTGCGG 5297 37 100.0 36 ..................................... CTGGTTCAGCCCCGAGAAGATCCCGCCCTGGGAGTT 5224 37 100.0 35 ..................................... CTCAGGGCACGGGATCGGCTTCACGATGCCCATCA 5152 37 100.0 36 ..................................... GGGCCAGAGGCAGGTGATCCGTGAGGCCAGCCGGTT 5079 37 100.0 37 ..................................... CAGGAGATCAAGAAGACCGGGACGATGAGGAGAATCG 5005 37 100.0 35 ..................................... GACAATGACCCGTCGAACCAGCTCCGGGCCCAGCA 4933 37 100.0 36 ..................................... GAAGATCGCGCCGGCGTCGTCGATGAAGTCGGCGAG 4860 37 100.0 37 ..................................... TTGCCTGCCCAGGTTACCTCAGAGAGGGTACAGAACA 4786 37 100.0 37 ..................................... CAAGTTCGTCATCGAGGAGCTGACGCGGATCAAGAAG 4712 37 100.0 35 ..................................... AGCCGGCAGAGCCACGGGCCGCTCTCGTCCGTCAT 4640 37 100.0 36 ..................................... CGATGGAGGCGGTGGATTTTTCCTGACGCCAGCCCA 4567 37 100.0 35 ..................................... GCGTCCCATATCTTGCCGTGGCCACGGCAGCACTC 4495 37 100.0 35 ..................................... CTCAAGGCCCGCTATCAGGCCGAGACGCGGACGGA 4423 37 100.0 36 ..................................... CTGGTGCGAGTTGCCGCTGACCTGGCCGAAGATCTT 4350 37 100.0 36 ..................................... GCAGCGGCGGCTCGACGCCTCGGCGATCGCGGTGCA 4277 37 100.0 35 ..................................... CGGCCGCACGAGCCGAGGCCGAGGCCAGGCACGGG 4205 37 100.0 36 ..................................... GACGCGTCAGCCATCGCGGTTCAGAACCACGCCAAG 4132 37 100.0 35 ..................................... GGCGGGCGACCCTCGCCGGTACCGCCGTGATCCAG 4060 37 100.0 36 ..................................... GGCCGCTTTCCCGCCTTAACGCTCGCATCAAGATAT 3987 37 100.0 37 ..................................... GATTCCGCCTCCAACCGAAGCAACGTGAGTTCGCGAC 3913 37 100.0 36 ..................................... CTTCGCCGTCGGCGACTATGTCCTCACCGCAGGCAA 3840 37 100.0 37 ..................................... GATATCGACACGGCCGCGGGGAAGGCGGTGGCGTCTT 3766 37 100.0 35 ..................................... GTCGGCGTGGCGGTCGTCCTGCGGCCGAACTGGAC 3694 37 100.0 37 ..................................... GATCTGCCCGGTCGTCAGCCCCGCGCCCTGGAGGTTG 3620 37 100.0 36 ..................................... GCTCGCACCCCGTCGCCAGTTCAGCCGCGTCATCAC 3547 37 100.0 37 ..................................... CCGTCGCGAGCCGGTGGATGATCTGGTAGCGGATCGG 3473 37 100.0 37 ..................................... CCTCGCTTCCGGGGTCGTCTGGTAGAGGCGATCGGCG 3399 37 100.0 35 ..................................... CCGCGGATCGGGGGCGCCGACGAGAGGACCGTGAT 3327 37 100.0 35 ..................................... GCGACAACGTAGGCTGTGAGGATGCCTCGGGATCG 3255 37 100.0 36 ..................................... AAGATGACGGTTGCCAGGCTGGGCATGTCGCCCAAG 3182 37 100.0 37 ..................................... CTACCGCGACGAGTTCAGGACGTGATCCGCGCAAGCG 3108 37 100.0 36 ..................................... GGCGTCGTCGCCCGGGGGCTCGTCGGTCTCCCATCG 3035 37 100.0 36 ..................................... GGCACCGGAGCCGCCCTGCTGGCGGGCCGACGCGAG 2962 37 100.0 35 ..................................... CCGTCGCTGAGCGGGCTCTCGGTAGGCGCCATCCT 2890 37 100.0 36 ..................................... TCAAGGCGGCGGCGAAACGGCAGCGAGCGACGGCCA 2817 37 100.0 36 ..................................... GTTCGACCAGAGCTCCATCGTCTCGGTCTCGCCCCC 2744 37 100.0 36 ..................................... GGAGGAGGTCCTGGAGGCGTTCGCCGCGGGATCGAT 2671 37 100.0 36 ..................................... GCAACGCAGGGCGAGATGACGGCACTTTCATGAGGA 2598 37 100.0 37 ..................................... GGGTCAACGGGGCGTGGTTGCCGCCATCGCCCAAGGT 2524 37 100.0 35 ..................................... CTCATGATCACGTTCATGAGGATCATCGAGGAGGA 2452 37 100.0 38 ..................................... GTGCTGTTGTCGAGGGTCGCGGCGCTCGCCCGGTAGGC 2377 37 100.0 36 ..................................... GTACTAGTTGTGAGTGGACACTACTCAGTGGACGAT 2304 37 100.0 35 ..................................... GATCGGGTCCGAGCGGCGAGGGATGATCACAAGAC 2232 37 100.0 37 ..................................... ACACCTACGTCCTGACCACGGACCCGACCGATGCGTT 2158 37 100.0 36 ..................................... CCCGTCGATGGGGAACGAGAAGCGTCCCACGCTCAA 2085 37 100.0 36 ..................................... GGCCGCCAAGAACCGCAGGGACTCGAACCCCGCCGT 2012 37 100.0 36 ..................................... GGCCAAGCACTACACGGACGTCGTGGGGTCCGAGTT 1939 37 100.0 35 ..................................... CGGCTCGCCCTCGAGCTCCTCGGCACCGAGGACGT 1867 37 100.0 36 ..................................... CGCGAAGACCGCGGGCGTGCCCTCGGCGATCGTCGA 1794 37 100.0 36 ..................................... CGGCTGGAGCGGCTGCATCGGGGTCTCTCCGGCATG 1721 37 100.0 36 ..................................... GGTGGAGTTCGCGTCGAAGCTCGTCGGATCAGTGAA 1648 37 100.0 38 ..................................... TCGGAGAGCGCCAGCCTTCAGAACGGCTTCCAGGCACG 1573 37 100.0 35 ..................................... CGATTCCCCGCGGTCTCACTCGCCGCGTCTACATA 1501 37 100.0 37 ..................................... GCCAGATTTACGCCGAGACTCGCATCGGCAAAATCCT 1427 37 100.0 35 ..................................... GCCTCTCCTGTCCTGACCGCTCGCTGATGGGGGAC 1355 37 100.0 36 ..................................... CTGATCGCCTTCCAGGTAGGCCCCGCCGTAGCTCTG 1282 37 100.0 36 ..................................... AAGCCCGGGTTTGTGCAGACCTGGGCAGGCTCGCCG 1209 37 100.0 36 ..................................... GGCGGCCCGGGTGATGTCGGGCGACCACAGCCGCCG 1136 37 100.0 37 ..................................... CCGGGGAACGACTGAACGAGAAGCGGCTCGCGGCCGA 1062 37 100.0 37 ..................................... CGAATTGCTCGGGCGTGGGTGCCGCGGATCCATCCTC 988 37 100.0 35 ..................................... TACCTCGGCCAGCTCGCAAAGGAGACCAGCATGGG 916 37 100.0 35 ..................................... GGGGATGGCCTCGCGGGATGCGTGGCCACGATCCG 844 37 100.0 36 ..................................... GGTCGCCTCGTCGAAGAAGCCGAACGAGCCCCAGGA 771 37 100.0 36 ..................................... GTCGGTCGGCCCGAGCTGGCCGATCCCGTTCCACCG 698 37 100.0 36 ..................................... CACGCGGGCAACGGCCTCTTCGTCGGTCGGATCGAG 625 37 100.0 35 ..................................... TCTCATCAATTTCTCCGTTGATGGGAATGGGGAAC 553 37 100.0 35 ..................................... TGCGACCGCATCTGGTTCGGCGACCTGATGAAGAC 481 37 100.0 35 ..................................... ACCAAACCGGCCTCGATTGGCATCGACCGCAGCCC 409 37 100.0 38 ..................................... CTCGCCTTTGCCAACCGTCTCGCCGCTCAGTCGATGCA 334 37 100.0 34 ..................................... GCGACCTCGAGCGGACCGGCGGTGGGTTCGCTAA 263 37 100.0 37 ..................................... ACGCGGCCGGCGAGATGGAGGGCGAGGGGCGATGGCA 189 37 100.0 35 ..................................... ACGGCGGAACAGATCGAGGCCATCGCGGGCGTCGA 117 37 100.0 37 ..................................... GCGTCGATCCGGAGGAAACCGAGATTCGAGTCGACAT 43 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 84 37 99.5 36 GCTTCAATGAGGCCGGGGCGATGATGCCCCGGAAGAC # Left flank : GATCCTGCGGGGCATGGAGACGCTCGCGCCGCGGATGGCCCTGCACGAGGCGAACGCCCGCCGGGTCGAAGCCTACCTGGCCGAGCATCCCCGCGTCCGGTCCGTCTACTGGCCCGGCTCGCCGCGCCATCCTCAGCACGACCTCGCCGTCCGACAGATGCGGAACTTCTCCGGCCTGCTCTCCTTCAACGTGAAGGACGGCCAGGGCCCCTCGACCGCTCGCCGACTGGCCGACCGACTGCGGGTCTTTGCCTATGCCGTCTCCCTCGGCAAGGCGAAGAGCCTGATCTTCTACATCCCGACCGACGACCTCCTCCGCTCGTCCTTCCGCCTCGAAGGTGCCGCCGCCCGCGCCTACCGCGACTGGTCCGCCGAGGGCATCTTCCGCGTCTCCGTGGGCCTGGAAGACGCCGACGACCTGATCGCCGACCTCGACGCCGCCCTCGGGTGATCGCGCTCCTCGCCCGCTGCACCCGACCGTCAACCTCATTCGCCCCCCG # Right flank : CTATCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCGATGATGCCCCGGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //