Array 1 141850-140178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOD010000002.1 Listeria ivanovii subsp. londoniensis strain MF8006 MF8006_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 141849 29 100.0 38 ............................. CAACCAGCTCTTCGAATATTTTGCGGAAGTACTTGACG 141782 29 100.0 38 ............................. CTTGTATAAAAAAACCTCCATTCTTATACGGAGGTTTG 141715 29 100.0 37 ............................. TTTTTAAACGTGTCATAAAATTTTTCTTGAATTGGTG 141649 29 100.0 37 ............................. CTCTCTACATCAATAATTCTATATTTCTTCACCTACG 141583 29 100.0 38 ............................. TTGATTTTAGTTCACCAGGAAGCGCAACACGCTTGCTG 141516 29 100.0 35 ............................. TTTATTGTTTGGTTCTGTGTTTACTTTAGTCTGCG 141452 29 100.0 37 ............................. AACTTAACTCCGCTTCAAGTTGACGATTTATTTAAGG 141386 29 100.0 36 ............................. ATTCCTCTCTGGTTTGCGCGCATTACAGAAGAAAGG 141321 29 100.0 36 ............................. AGAAAGAAGGCAAGCGATTGACCGGAGTTCCTTCCG 141256 29 100.0 35 ............................. CTTGATAAGAGTCTTCTTGGGGTTGGGGTATCAGG 141192 29 100.0 38 ............................. TTCAAAAAACCAATAACGACAACAAATATCCCTCCAGG 141125 29 100.0 38 ............................. TACATACAAAAGGGAGCTTGTAATGTGAAAAAAGGGAG 141058 29 100.0 37 ............................. GTACATTAAACGGTGAGGCTGATAAGTCGTATCGTCG 140992 29 100.0 36 ............................. ACAAATGGGGAGTGCGAATTCAAGAACCGCTGTCAG 140927 29 100.0 35 ............................. ATTTTTCCGCTTCTATTTCTAAATAAGGTAAAAAG 140863 29 100.0 35 ............................. ATCAAAGCAATGCGTGACTCAAGCGGTAACCTTCG 140799 29 100.0 37 ............................. ACCTTCCTTTTTTCGTATTTTTTCATATTCTGCTTTG 140733 29 100.0 37 ............................. ATGTATGTCTCAATGTCTCGCAATAAGTCAGAGTGCG 140667 29 100.0 38 ............................. TTGCTTATTTATCCACCTTTCTTGTGCGACGAGTTCGG 140600 29 100.0 38 ............................. ATTGTTCAGATAGATATGTCTGGCGAGTTGGTACACCG 140533 29 100.0 37 ............................. ATCATTCCGGATATTTCTCCCCTTAACGTTTGCATTG 140467 29 100.0 36 ............................. AAAAGTAATTCCGTTACATCGTCTTTTTGATCTACG 140402 29 100.0 38 ............................. TTTTAACGGGATGACAGAGATAGTATCAAGCAGTAAAG 140335 29 100.0 36 ............................. TGTGGCAGGTGTTGAACTTCATCCGAGTCGATTATG 140270 29 100.0 35 ............................. GGACAATATAACGAAGACATAGTGGTTCAGTCATG 140206 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TCTTAAAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGTTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAGGAATAAAGTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGCTTAAGAATGAAAAAAATCGTATCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 157472-154533 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENOD010000002.1 Listeria ivanovii subsp. londoniensis strain MF8006 MF8006_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 157471 29 100.0 36 ............................. TGGCGCACAAGAGATGGCAAGGTAGCAAACGTTAAG 157406 29 100.0 35 ............................. TCCCATAATATAGTATATGTGTTTTTTAATTTTTT 157342 29 100.0 34 ............................. TTAAAACGGTTACTCGTAAAGCGGAGGGTATTCC 157279 29 100.0 36 ............................. AGTGAAGAATTTAGAACAGCAATTAGAGTTAGCAAA 157214 29 100.0 35 ............................. TTTGGACGAAACAGGTAAATGTGTAAATGAGGTAT 157150 29 100.0 35 ............................. AAGTACTATCATTGTCTTCGTGATATCTTGCGTTG 157086 29 100.0 36 ............................. TCTATTACATATTTTTCTACCCCTGTCCTATCCTGC 157021 29 100.0 37 ............................. ACGACTGCAGGGACGGCTGATAGTGAACAGGCGAAGG 156955 29 100.0 34 ............................. TATCGAAGCTCCAACTTTTGCCAATATAATCAAC 156892 29 100.0 35 ............................. TTTTTATTAATTTGACTTGGCTAACTGGGATTGTG 156828 29 100.0 36 ............................. AACTTCCAGCTCTGCCTTCAACTCTTCAATTAACAG 156763 29 100.0 36 ............................. ATCGATACAAAGAAAATAAAAAGCATTCCGTATGTT 156698 29 100.0 37 ............................. TCGAATAAATCGCAAATAGGTAACCAGATGCGCTCAC 156632 29 100.0 37 ............................. TCAAGCCGGAAGCTGCTAGTACTTCCCCTGATTTCTC 156566 29 100.0 36 ............................. TTCATTGGCGCTAATATAAACGCAATTAATAAGACT 156501 29 100.0 37 ............................. TTTTTTAAGAACTCGGATAAAGGTTTTATGGAATTTG 156435 29 100.0 36 ............................. GTCATTTGAATCAAATTCGCATCTTCCATGATTCGG 156370 29 100.0 35 ............................. ATTGAAGAGCAATATGCTCCGGAAGAGGACTCTGG 156306 29 100.0 36 ............................. GTGATAAATGAACAAGTGAAAGCATCGGTGAAATTA 156241 29 100.0 36 ............................. CGATCCACAGCTGAAATCTCTTCTGCAAAAGCGTGC 156176 29 100.0 34 ............................. CACGAACGCAGGTGGTGGACAAGGTTCTGAAACC 156113 29 100.0 34 ............................. TTTTCAGACTAAGACAGCGGATTTATATCATATT 156050 29 100.0 38 ............................. TCATTTGTTCGCTTACCTGTATCACGAATGAGCGTTAG 155983 29 100.0 35 ............................. ATGAGTTAGAAAAGATGGGAATAAGAACAGAAATT 155919 29 100.0 35 ............................. ACATAACCTTCTAGTTGATAGTATTTTGTAACAAA 155855 29 100.0 34 ............................. AAAGAAATATGCGAGAATCTTTTGCAAATTCCTT 155792 29 100.0 36 ............................. TTAGAAAATTATCGTGCAAATGTTTCAGATGACAGT 155727 29 100.0 33 ............................. TTCTCATGGGATTGACTACAGTAAAATAAATGA 155665 29 100.0 35 ............................. AAAGGCTTTCCAGATTTATTCGGATTTCGCGGAAC 155601 29 100.0 36 ............................. AATTAAAAATGCTAACAAAAAACTTGCGGATATGCT 155536 29 100.0 36 ............................. AAGCTAACAATAGACATTGCGACCGCTAAAAAGACA 155471 29 100.0 36 ............................. ATAAACGAGGGGAAATAGGCAAGTAAACCCCATCAA 155406 29 100.0 35 ............................. GCGATACAAACGTTAGAAAAGTCAACGATTATTGC 155342 29 100.0 36 ............................. ACAATACGCCAATAAAGGCTACACACACAGTAAGAC 155277 29 100.0 35 ............................. TTTACCTGACTGCCTACCGAAGTCCACTGCGCTGC 155213 29 100.0 36 ............................. GTCAAAGCCACTTAGCGCAATAATCTCCGGTGACTT 155148 29 100.0 37 ............................. ACCACATCCGTTTTAGTAGTTAATGCTGTTGTTGAAG 155082 29 100.0 37 ............................. ACTGGATATAAAGGTTCTTTCAAGCAAGAGAACATCA 155016 29 100.0 37 ............................. TCAACTATATGTTTAGTCACTTCGAACTTTTGATTAA 154950 29 100.0 34 ............................. TACCTTGCTGGGGAGCTGGATATATTGGCTTTTG 154887 29 100.0 37 ............................. TAAGTTAAATTGCTTTCAATTCGCAAATCTTTTAATT 154821 29 100.0 36 ............................. CCTCTCGTGAGTTCTATTTTTTGTCTCGCTACTTCG 154756 29 100.0 37 ............................. GAAGGATAAAATATTTTAAGAGTAGGTGAAATCCTAC 154690 29 100.0 36 ............................. GACGATAGACATAGAAGGGGTATCGACGAGACAAAC 154625 29 100.0 35 ............................. AACGATTTGTGTCTTTATTTCGAAAAAGGAAATGA 154561 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 46 29 100.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTATGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : ACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATGTGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGGAATTGCAACAAAAAAACAAGGAACTAGTGCAAAATTAGTTTCTTGTTAGAGAGGGTGTCGGTTATTTTGAAGGATAGAAGTTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATCTCAGATACATTTTTAGATTCATAGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //