Array 1 21877-19398 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSO010000003.1 Limnothrix sp. FACHB-708 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 21876 37 100.0 38 ..................................... ATCAGCTAATTTAGATTTTTTAGGGCCAGATTTATATT 21801 37 100.0 36 ..................................... CCGTCCTATGCATGGATTTCCAACCCCAAGGGTGCG 21728 37 100.0 34 ..................................... AATATTCGTGGTGCAACGAGCTTGAATCTAACTC 21657 37 100.0 39 ..................................... TTTCGAGGGTATGGGCCATGGCAGCGGCAGTTGGCCGCC 21581 37 100.0 37 ..................................... ACCCTGTCGGCCAAGACGGTCGATCGCCACAAGGTGC 21507 37 100.0 44 ..................................... CCCAGCCACAACGTTATTGGATTGGAGGTGAAAACCATGAGTGA 21426 37 97.3 37 ......T.............................. CCCAGCCACTCCGCAATCTGAGTCACCCCGGACTGTG 21352 37 97.3 34 ......................A.............. ATGTGGTGGTCGTGATCCAAGATCATCTGTTGAT 21281 37 100.0 37 ..................................... CGACACCGGTTGCGGCCTCGGATTGTTTGACCTCTAG 21207 37 100.0 38 ..................................... GGTTCAGACGGATCGCGCTGGGGTTTTCGTCTCATCGG 21132 37 100.0 38 ..................................... TGCAAAACGGCTGTGGCATTGCCGGTTTTAATCAAATT 21057 37 100.0 33 ..................................... GGCCGCCATGCCGCAAGCCACGGCCCCGGCTCC 20987 37 97.3 39 ..................A.................. CACCACCCGGTCAAGGTCTACTTGCAAGATGAGCTGATT 20911 37 97.3 36 ..................A.................. CTCTTCGAGATCGACCCAATTATCCCTGGCTTCCGA 20838 37 100.0 37 ..................................... AACACCGTCACCACCGTTTGCAGCACCGGCAGCCCAA 20764 37 100.0 34 ..................................... AGCCGAAAAAACGCCGCCGCCCAATCTACTCCCC 20693 37 100.0 40 ..................................... GCGGGTCACGCTTGGCCCATTGCTCGATCGCCCCAAGACT 20616 37 100.0 34 ..................................... AAGTCAGGGTGGCGGCAATTTCACCCGATTTGAG 20545 37 97.3 37 .................T................... GGTGGATTGAGTGATCGCTGTGGTGCGTTGCTGATAG 20471 37 97.3 38 .................T................... GGGGCTACTTGGGCCAGCTCAGGGCCGCTTGGGCCAGG 20396 37 100.0 39 ..................................... AACAGACGGGGGGTATGTGGACTAACCGGGGCGATCGGT 20320 37 100.0 41 ..................................... TGGGGGGTAATCGGTACGGTAGGCGCTGCCGGTAAAAGGGC 20242 37 100.0 35 ..................................... TTGGTTCAGCATGGCGCTTCTGCGTCGAAATCAGG 20170 37 100.0 36 ..................................... TCCTTCCTGACCTCAAGGCTGTAGACGCGAACCATC 20097 37 100.0 37 ..................................... TCGGCAAGGAGTCGCATCGCCAAGAGGTGGAGCGATA 20023 37 100.0 38 ..................................... CGGCAACGTCCCCCTCTGACTCCCGGATCCTGATCAAC 19948 37 100.0 34 ..................................... TTGATACCCTCGATCGCGCCTTGGATGGTCAACC 19877 37 100.0 36 ..................................... AGGATTAGCCCGGAATTTCAGGCATTTTGCCGTCGT 19804 37 100.0 37 ..................................... CACCAGGGTTTGATCCACCCATCCGCTCGCCAGGATA 19730 37 100.0 35 ..................................... AGCTCGGCCGCAACCGAAGCGATGTCATTGCCCTC 19658 37 100.0 38 ..................................... TCGAATCAGCCACCCGTGATTTTCATTATCGACGAATT 19583 37 100.0 36 ..................................... GTCGTCGTTTGTATTGCATTCTTCGGGTTCTAGTAC 19510 37 100.0 39 ..................................... AGTGCGTGAGTTGCTGGAGAGCTACCTGCTGACAGACGG 19434 37 91.9 0 ................................A.T.G | ========== ====== ====== ====== ===================================== ============================================ ================== 34 37 99.3 37 GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Left flank : AATCACACGAGTAGCAGTTGCTGACGCGAAGGATCGTGAAAAGCTACAAACGATCGGGCGCAAAACCAAAATCTCTTACGGTCTATATCGAGGCTATGGTTTCTTTTCGGCTCCTTTGGCCAAGCAAACCGGTGTGACCGATCGGGACTTGGAACTGTTTTGGGAAGCGGTTCAAGGAATGTTTGAAGTGGTGGATCGATCGGCTAGTCGCGGGCTAATGGCTGTGCGTGGGTTATATATCTTTTCCCATGAAAATCCATTGGGTAATGCACCAGCCCACAAATTGTTCGATCGCATTTCGGTGCAAAAGCGTCCTGAGGTCGATACACCGCGATCGTTCGATCACTACGTCATTGAACTAGACGAAACAAATTGGCCCCAAGGAGTCACCCTAACCAAGCTGATTGAAGGCTAATTAGTCCTTGGCGGAAGCCAACTCTCAACCTAGTTGGCTTCCGCACATTTTCTTATCTTTTGGTTCAGGCCAGTTCGTAAACCCT # Right flank : TCGCTTTATAAATCAGCTCTAAATCCGGATTTAGAGCTGCAAAGTCGGCTTTAGATTCTCTGTTATGAGTTAGCTCCTAGGTTTGAACTGGGCTAAAAACCGGCATTTCGGTTAGTTCAAGCTCATGATAATCAGCCCCTGTTGCCCCAGCAGCACTTCACGCAAAAGGCTCACTAAACCAACCCAAATGATCGGGCTGATGTCCACGCCGCCGATCGGGGGGACGATCGCGCGGGTCACCTTCAAAAAGGGTTCCGTCGGAGCCACCGCCAACTTAAAGGGCAACTTTTGGGCATCCACCTGGGGATACCAAGTCAGTACGATTCGGACAATGAACAACAAAATGAACAGACCCAACAGCAGGCTCAGGGCCCACGATCCAATCACAACGGTACTCATGCCGAACTTGGGGTAGAAATTGAGAAGGGCGGGCGATCGGCCTCGGGGGGATGGCTAGCGCAAAATCTGGCTCAGAGGGCAGCGCCCGGCCCAGATGCCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCCCGGCCCCCGGGCTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.70,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 69757-68487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJSO010000017.1 Limnothrix sp. FACHB-708 contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 69756 36 97.2 37 ......................C............. ATGTCGAATCTAGCGGCGGGCATCACGGCCGGCATTG 69683 36 97.2 37 ......................C............. AAAAACCTCGATCGATCATTTGCACCGGAGCTGGCCG 69610 36 100.0 35 .................................... GGTCTATACAAACGAGTTTCGCTTGAACGAAGCAG 69539 36 97.2 37 ......................C............. ATGTGGAAAACCTGACGGAACGGGCGGATCGTGACCA 69466 36 100.0 35 .................................... TTGACCGCCAACCACTTTTGTCCGTCTTTGGTCGT 69395 36 100.0 36 .................................... ACCCCTGAGGCGGTGGCCGCGGCCAAGGGAATTCGC 69323 36 100.0 35 .................................... GTTGTGGTCGGAGTCGGCTTTCCCGTTGAGCTGTC 69252 36 100.0 35 .................................... GCCGAAGCGACCCTTGAGCAAATCTTTCCCGGCGC 69181 36 100.0 37 .................................... GCAGTTTTGAAAAAACCACAAACGTCCATTAAATTCC 69108 36 100.0 37 .................................... GGTCGTTGTAGGCGGGGTTGAAGTAGGGGCATTGCCC 69035 36 100.0 39 .................................... AGTTGGAACGGGCCCGCCAAATTCAGCACGCGCTGAAGA 68960 36 97.2 39 ..................T................. GGACTCGATCGTGTCGCCTGTGGCCGCATCAATAATCCG 68885 36 97.2 38 ..................T................. TGAAGGTATAGCGCATCCCGATCAAGCGATGGATCTCT 68811 36 100.0 37 .................................... CCCAATTCGCGGCGCAACTCTGACAGAGCTTGATCGC 68738 36 100.0 37 .................................... CCAGCAACAACAGGTGGGGGCGCATCTATCCCACCCG 68665 36 100.0 34 .................................... GGTTGCAAGATCGCCAACTGCAAAAGCTAACCAA 68595 36 100.0 37 .................................... TGCGAATTTCTCGACAACCAAATCGCGCGGGTGATCG 68522 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 99.2 37 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TCGGCCAGGGTCGATTTACCGTGGTCAATGTGCGCCACGATCGAGAAGTTACGGATGCGCGAAACGGGAACGTCGGTCATAGGAGCGGAACGGTAGGGCAAACGGGGAAAGGAAGCCAACCGCATTGTAACGAATTCCATAGCGTCTAATTCGCTTTGGCGCTCTGGATTGTTTGGGGCCAATGGGGCGATCGGGCTTTCGGCATGGATCGCGATCGGACGGGGGCGATCGGGCGGGAATGTTGCCCAAAAACAAGCACCTGGGGCGGTGGCGGCGGGGCGAGGGGTTGGAAGGGCGCAGAATGTTGATGGGGTTTGGGTTTGGCGATTTTTGGGATCTTTGGAGATGCTTGTAAATAGCTGAAAGGGAGATGGGGCAAGGGTTGGGCGATCGGCAAAAGGGCGATCGGGGGTGATTTTTGGGCAGATGCGGGGCGATCGGCTAAGATGCTTGTAAGGTTCTATTTCGGCGCTTGTCCCGTAAGGGTTTCAAGCGGCGGG # Right flank : AGCACAGCACCGCACAGCGCAGCACCGCAAAACACTCGTTTCAGCCCTGTTCTAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCGGAGTTTTAACCCGCCGATTCATACCTGGCTTACTCTCCGCCGCTCTTTGCCTCCGCTTCGTCACCCCCCGATCGCCTGTGATCTGTCACCACACCACCAATTGATTCAGAAAACGCCCATCTTTCGCGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCCGTAACCTTCGTCTGGAAAGTCTTGTTCCAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGGCGATCATAGGTTGCTGAAATATTTGATCGCTTTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //