Array 1 58039-58186 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNG01000003.1 Cronobacter malonaticus strain cro1031W contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58039 28 100.0 32 ............................ GTTATACGGGCGCGGCATATTGAGTTTAATGC 58099 28 100.0 32 ............................ CGCTTATCACACCAAGCGAGCTGGCCGCTCGC 58159 28 85.7 0 ....................TC.GT... | ========== ====== ====== ====== ============================ ================================ ================== 3 28 95.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAATACAAAAACAGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGTGCGGATGAATGCCGGTTTCAGGCGATGTTGTACGGGCATTAGCTACCCGAAATCAGCGGAAAAGTGCCTGCACAGAATGAGGGAAATGCGAGAGTGAACGCACCAGGGAGCAAACAACCAAACGGATAGCGCGATAAATGTGTGGGCATTGCGCCTGGACGTCTAACCCCTTTTTTATGCTCCGCCTCTAAATGGTTGATTTATAATACGCGTACTGCGGGTGATGAAAAAAGGGTTTCAGGCGCAGAAAGGCAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGTGTATTCTCTCTTCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTCGCCGGCAAAAATGTCACGACCTGGGGGTATAACGGTTCGCTGCTGGGCCCGGCGCTTAAGCTGCGTCAGGGCAAACCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAGACCACGGTGCACTGGCATGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCG # Questionable array : NO Score: 5.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 182-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNG01000078.1 Cronobacter malonaticus strain cro1031W contig78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181 29 96.6 32 ............C................ ACGTACGGGGAAGACCAGGAGGAGGGCGACTA 120 29 100.0 32 ............................. AATTGGGATACTATTAAGGATGCCTGGGAGCA 59 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAAATGATCTGGCATCAGATAAATAAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCTACGAATCATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATCCCGGTGGATTTGGATGGCCTGAGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAGCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGAATGTTGTTGCCCAAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GGTATATCAATAACGTGGTTTATTGAATATG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16162-18142 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRNG01000060.1 Cronobacter malonaticus strain cro1031W contig60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16162 29 100.0 32 ............................. CCCGGTATCAATCCACGCTGAAGGTCGGTGCT 16223 29 100.0 32 ............................. GGGATTGCTTCATGAGAATTCTCAGTCGTTAC 16284 29 100.0 32 ............................. TACATGGGTTCCAATCGGTTGTGCTATTGCGA 16345 29 100.0 31 ............................. CGGATGTCGTCAGCGTCTCGCTTTTGGCGTT G [16373] 16406 29 100.0 32 ............................. CTGCCCTGGCTCTGTATCTTCTTCGTAGTCAC 16467 29 100.0 32 ............................. GGATCTAGTGCCGAAATATTTTTCCCGTCTTT 16528 29 100.0 32 ............................. CCTTTAGCCTGGACGCCTCTGATTCCACCACG 16589 29 100.0 32 ............................. AACAATTGCGGGTTTTAAATATGCTCGTTCGC 16650 29 100.0 32 ............................. GTTTTTCGAATCGGGGATATACGCATTTAACC 16711 29 100.0 32 ............................. GCCGCCATGCTTGACGTTGTGTTGCCTACGGC 16772 29 100.0 32 ............................. TAGATTCATAAATCACCCGAATAATCTAGCGA 16833 29 100.0 32 ............................. TTCATAACGATGAGCTCCGCATTATCGCAGCG 16894 29 100.0 32 ............................. CTGATGGTACAGGGGATGTACTCAACGTTTAA 16955 29 100.0 32 ............................. CGACAGCGAGCGATTACTGGCGCTACAGCAGT 17016 29 100.0 32 ............................. TACGCCTTATCGCCCTCAACGATATAACTAAA 17077 29 100.0 32 ............................. GGGAAAATGGGCGTCAGCAGCAATGACCGTGA 17138 29 100.0 32 ............................. GAAACGCGGCGCGGGTGCTGCTCGCCGACCGG 17199 29 100.0 32 ............................. CAATTATTAGCCCCAGATGGCGTAACGCCACT 17260 29 100.0 32 ............................. CCCATTTACACCGAGTGCAAATATCAGGGCGC 17321 29 100.0 32 ............................. CCGCTAAATTCAAGAGCTACAGCTCCCGTAAC 17382 29 100.0 32 ............................. GGTTAGGAAAACCAAAAGGCGCTGGCGCGAAA 17443 29 96.6 32 ............................A CTAACAGGAAGCTGCTAGCAGGCAGTTTATTC 17504 29 100.0 32 ............................. CGTGCGCGGTTTCACGCTCACACAAAACGAAG 17565 29 100.0 32 ............................. CGCTACGATCGTCGCTGCAAACGTCGTCGCCA 17626 29 96.6 32 ............A................ CGAGGCATCGCAGGCCACAAGAAGGAAAGGAA 17687 29 96.6 32 ............A................ CGCTTTGCGCGCTTCCCAGAATCAGACCGGTA 17748 29 96.6 32 ............A................ TGGACATTACTTTCCTCTCCGCTCACGTGGAA 17809 29 96.6 32 ............A................ CCGCAGGTAACCAGCGGCGACTGGCAAAACTT 17870 29 93.1 32 ............A...........G.... CGAGAGAATTTAAAACCCCCACCACCGACGCA 17931 29 100.0 32 ............................. CCACTCTTCAAAAAATCCCAGGAGATTACCTA 17992 29 100.0 32 ............................. TTCGTGTCGGTGCCGTTATCCGGGGTGAAAAC 18053 29 100.0 32 ............................. AACACGTCGTCGTAGGCTTTTCCTGGCCACCA 18114 29 93.1 0 ..........G..............G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCGGCAGCGTCAATACAGACTTCTTTTGAGAGCCTGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGACTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //