Array 1 108-990 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAD01000095.1 Escherichia coli strain A310 NODE_12_length_155259_cov_77.6402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 108 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 169 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 230 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 291 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 352 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 413 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 474 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 535 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 596 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 657 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 718 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 779 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 840 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 901 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 962 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTATTGATTTTTCGCGAAACCATTTGATCATATGACAAGATGTGTATCCACCTTAACTTAATGATTTTTACCAAAATCATTAGGGGATTCATCAGTGCTGGGTG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26690-28548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSAD01000095.1 Escherichia coli strain A310 NODE_12_length_155259_cov_77.6402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26690 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 26751 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 26812 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 26873 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 26934 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 26995 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 27056 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 27117 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 27178 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 27239 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 27300 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 27361 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 27422 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 27483 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 27544 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 27605 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 27666 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 27727 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 27788 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 27849 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 27910 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 27971 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 28032 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 28093 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 28154 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 28215 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 28276 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 28337 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 28398 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 28459 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 28520 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //