Array 1 937-174 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMGG01000006.1 Enterococcus faecalis strain W460 W460_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 936 37 100.0 29 ..................................... GGTACCTCGTTAGTAAACCAGTTGACCTC 870 37 97.3 29 ....................................G AAACTATGTTATCAGTCATCGTGAACGCT 804 37 97.3 29 ....................................G GCATCTTTCAACACAGTGCGCTTTTCGAT 738 37 100.0 29 ..................................... CTTCTAGCGTTTCAATGTCAATAGTTACA 672 37 100.0 29 ..................................... TGATACGCTTCGTCCGTGTGATTGAGATA 606 37 97.3 29 ....................................A AATACCGCTAGCATTGTAGCCACCAATCT 540 37 97.3 29 ....................................G CAAAGCCTTTGGCAAACGCTCGAAGCACT 474 37 97.3 29 ....................................C GCGTTCTCGTCGTAAAGGTGTAGCGGTAT 408 37 100.0 29 ..................................... CCCAATCAGGCATGGTGTCAAATAATTCA 342 37 97.3 29 ....................................A GTACAAGTTTTGTACTGGGAGTATGGCAT 276 37 100.0 29 ..................................... GTACGATAGCGCCGTAACGCCCCAAGACA 210 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 12 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGAGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GGATATTTTGAATTTATGTTATAATTATTGGTTTTAGAGTCATGTTGTTATCTTCGAATGAAGAAGAGGAGTGCTAAAAGGTTACTGTTTCCAGTAGCCTTTTTTGTTATTTTTATTTCTTTCATTACCAAAGTTTAGTAAAATGAAAGTATCTTAAATTTTAAGTGAAATAAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 394489-393924 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMGG01000001.1 Enterococcus faecalis strain W460 W460_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 394488 37 100.0 29 ..................................... TTCAATTTAAGGATGTATGCTTTTGTTGT 394422 37 100.0 29 ..................................... TTACGCTACACCGCAAGTGGTTCTGCAGT 394356 37 100.0 29 ..................................... GCTCACCTGCACTAGCATTTACTAAAGAA 394290 37 100.0 29 ..................................... TAGGTAACGTAACTATATCTCAGATAAGT 394224 37 100.0 29 ..................................... TACGAAAAATACTGGAGCTCCCTCGTCCA 394158 37 97.3 29 ....................................G TTAGCTGGGCGGTTCAATGTGGTCATCTA 394092 37 97.3 29 ....................................A CGTTTGATTGCAGACATTTGTAAACGATA 394026 37 97.3 29 ....................................G AATAAGTATCCAGTAGTTATGAAGGCTCT 393960 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 98.8 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : GTAACGATGGGGAAAGTAAACGCTGTATTAAATTCAGGAGAAGAACTATACGATGTTTCAGAGGATAGACGTTTTGCTGTGTTAGACATGGGGTTAGAAGATTTAATGAAAATAGAAGAAGTTTGTAAGGAATATAAAAAACCAATACCAACAGAATTTAAATTAATCTATAACGTTGAAACAACAAGCTTTAATACAAAGTATAAATATGACCTTCAATATTCCAATAACGATGCTTTAACTGATTATGATCTCTTTATGTCGTGGTATGAAGAAGTTAAGAAAGAGGTAGAAAATCCACCATTGTAATTTGGATTTTAATAAATTTTCATTTTTTCTATTTATTCGAACAAAAAAATGGCTCTTTGTCAAATAATGTTGGTAAAGAGAAAGTTTGGTATAATGAAAGAGTAGAAAGGAATCAATACATTTTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : ACTACTTTGAAGTAGTAACGAGTGCCTTTGTTTTAGAGTCATGTTGTTAAAAAACAAACTATCACCACAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 474-173 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMGG01000016.1 Enterococcus faecalis strain W460 W460_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 473 37 97.3 29 ....................................T TCATAAAAGGGAACAAATACATTAATTCA 407 37 100.0 29 ..................................... TTTCTCTGTTCCACCTGTTACTGTTACAT 341 37 100.0 29 ..................................... CGTACAGCCATTCGTCTGGCATCTTCAAT 275 37 97.3 29 ....................................A AATTATTGAACGCTTTTTACAAGACTATG 209 37 91.9 0 .........................A..G.......T | ========== ====== ====== ====== ===================================== ============================= ================== 5 37 97.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : CATATATCCTCATCAAGTAGTAAATGCTTCTTTTGATTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAAGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTTGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TTGATAGGTGCGCCAAAAATCTTTTTTCTGTTTTAGATCCTTGTTATTATCTTCGAATGAAGAAGAGGAGTGCTAAAAGGTTACTGTTTCCAGTAGCCTTTTTTGTTATTTTTATTTCTTTCATTACCAAAGTTTAGTAAAATGAAAGTATCTTAAATTTTAAGTGAAATAAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 41084-40387 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMGG01000017.1 Enterococcus faecalis strain W460 W460_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 41083 37 100.0 29 ..................................... CAGGTACAGTGTTCTTTCCCACGATGGCT 41017 37 97.3 29 ....................................G TACAAAACGTTATATCATGAACAGATTTG 40951 37 97.3 29 ....................................A GAAACTGCAAATGTGCCAGCGCTAAACGC 40885 37 97.3 29 ....................................A CACTGCTAAACGACTTGGCAAAGAGTTAT 40819 37 97.3 29 ....................................C GTACTCACAAACAACGTTGCGACATATTA 40753 37 100.0 29 ..................................... GAGTAATGCTCGCTCTTGTTCTTTAGTAT 40687 37 100.0 29 ..................................... TTGCTGATAAAAATATTATAACAGAAATG 40621 37 94.6 29 ...........................C........C TATAGAATGGTAGTAGGTACCGACGCTAA 40555 37 100.0 29 ..................................... CTGATTGATGATATTATGACTTACTGTCA 40489 37 97.3 29 ....................................A TTTGCTGAAGTATTACCTTCAGTTGATTT 40423 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 11 37 98.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CAGTTTAAACTGTTTTATGATGTTAAACAAAACAGCCTTGAAGCAAAGTATAAATATGATTTTCAGTATTTAGATTCTGATGATTTAACTAACTATGATATTTTCATATCTTGGTACGAAGAAGTAAAAAATGCTGTAGAAAATCCCCAAGAATTTGGATTTTAGTCACTTGTTGGAGAAACTTATATGACTAAAATATTTGAAGATGAATTTATGGACTGGCAAGCAGATATGGTGGATATTGCAGATGAGTATATAGAAGGACGAGCAGAAAACATTTATTTATATGGTTCAATAGAAGATGGTGGTTATTTCTTTAATTTATTTTTTAAGATAAAGGGTAAGATTCTTTTTATGCACCAAGTTAATTCTGTATTGAGTGAAAGTGAGAAGCAATTTGATATTTCACAAGATAGACAAGAAACAGTCCTAATAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAAAAAAATAATTCTCCGAG # Right flank : TAAACGTTCTATTCCCATTCGTTCCGACTGTTTTAGAGTCATGTTGTTTAGTTTTCGCAGATACGATTTGATTGATGTAAAAATATCGTTAATATGTATAAATGTGATTGTTATATAAAAAATATAAGTAATAAATTGAAGCTTTGCTAGAGCAAGTGACGCGATTACGAAATTATTTAATTTTAGAGTCACGTTATTTATTACTTTACGAATAGAGAATACGATTATCTATAAATCAAGAACTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTTATTAATATTTCATGCTTTTGTTGTACTATTTGATGATACAAAAAAGTAAAACTGAGGACCCAATTAAAGTCAAGTTAACCACATTGAAAGATAAACCTTTCAATGTGGTTAAAGATGCTTAATGAGATTCATGAAACATAGAGAGCGGATTAATTTCCTATGTTCTTTATTTGTATATTTTCTTGGGAATCATTATTGATTGTGGATTAAAAAGATAATC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //