Array 1 543997-544939 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000013.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 543997 28 100.0 33 ............................ CGGTCGGCACCCTCGCGGCGTTCGCCGACCGGG 544058 28 100.0 33 ............................ CGTGTCCAGCGGCTCCAGCCCGGGGTAGTTGTC 544119 28 100.0 33 ............................ CTCGCCGTCACCTGCTACACGAATGCCGTTTAA 544180 28 100.0 33 ............................ GGGCCGCCCGGGTGTCGGCGGTGACGGCGCCGC 544241 28 100.0 33 ............................ CTGGTCCGGCCCGTACGAGCCGTACGTCTCCTC 544302 28 100.0 33 ............................ CGTGATCATGCCGACGCTGCGCCCCTTTTTGAT 544363 28 100.0 33 ............................ TCGTAGCGGCACCGCCCGACAACTAAGTCGGGC 544424 28 100.0 33 ............................ GCCGAGCGCGGCGGCCTGGTCGAGGGCGATGCC 544485 28 100.0 33 ............................ CATCCACGCAGGTCAGCCACTCCCCTGCTTCGA 544546 28 100.0 33 ............................ CGTGCTGCGGCGGTGGAAGCCAGCCGCGAGGCT 544607 28 100.0 33 ............................ GGTCGGAGGGCAGGTTGTTGAGGGCGACCAGTG 544668 28 100.0 33 ............................ CCCATGCCCTGCCGCGCCCAACTCCAGGACGAA 544729 28 100.0 32 ............................ GTCTGCCGGGTGCGGCGGCACAGCGTCAGTGC 544789 28 100.0 33 ............................ CGACGTCACCGTCGAACGCGCCGGCGGCAGCTC 544850 28 100.0 33 ............................ GGACTGCGGGGAGGAGTTCCGGCACCTCGCCAG 544911 28 100.0 0 ............................ | T [544936] ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : ACCCACCTCCCGGTGCGCGACCACGCCTGGGAACGCACCGACGGGCGGGAGCGCGACATCGCCCTCTGGACCGACGTGCTGCGGCGCGCCGCGCCGGAGCTGATCGCCGCCCCGGGCTCCCTGCTGGCCTTTGCCGCGTGGCGGGCGGGGCAGGGGGCGCTGGCGGCGGTGGCCCTGGAACGGGTGATCGAGGCGCACCCGAACTACTCGCTGGCGCTGTTGCTGGATGACCTGCTGAGGCGCGGGGTGCCGCCGTCCCGACTGGACGGCTGGCCGGCGGTCGACGCGCCGGGGATGCTGCGCCGTCGACGCCGACGCGGTTGAGGATCGGGGTGGGCGGGGGCCGGCGTGGTGCTCTCGGATCTCCCCTTGGGGTCTGCTCACGCCTTACGCTGTGCCAGCGACGGAACAGCCTGGCAGCCGTCCCTGAGGAGTGGATCTTGAGTCACAGAGTGAATGAAAGCCGGGGAGTTGATCTCTAGCGGCCCAGGTCAGGAAGT # Right flank : CCGATGAGGGCGAACCGCCGACGTGTTGAGCGCACCGACACCCCTCCGGCCCTCACCTATGAATCGCCAGCCTGCGCCACCCCAACTGGCTGGCTCCACATGGGCGACGTAAGCGCGGCGACGCAATCTTGGACGCGAATGGCCCCTATGGGGGCCGAAATCTACCAAGATCTCCGGAGCGTCCCGTCATCCGAGACCAATTCCCGGTTAGTAGGAAACCGACCTGGCCGGCCTCGCCATGCTGAACGACTACAGGGCTCGTGGCGGTCGGTCAGGCTACTTGGGCATCGCCCCACAGGGCCTCGAAGTGCTCCACGTACCGGTCGAACGGGCCTCCAGCCTCCCGGCGTCGGAAGTGCAGCGTTACTGAATCCTGGCCCAGCCCCGCCCCGATATGGGTGGCGACGATGGCGTCGTCATCGAAGATCCAGGTCGACATGGCGATGTGACGGTCAGAGATTCGCACGGGCAGAGGGGTGGGCGACTTCGCGATCTCCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 441442-443424 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000014.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 441442 28 100.0 33 ............................ CTCCGTCGTCACGCGGAATGAGGGCCACATACA 441503 28 100.0 33 ............................ CGGGTACTCGTCGCTCTGGCGGCGGCCGGCGGG 441564 28 100.0 33 ............................ CGCTCCCTCGGCGTGGCGCGCCGACCTGCCGCC 441625 28 100.0 33 ............................ CGGCCCCGAGCGGCAAGCACGCCTGGAAGCCGC 441686 28 100.0 33 ............................ CAAAGCTTATGGAGGTTCCTCGGTTACCAGTCC 441747 28 100.0 33 ............................ CTCGGCGGCGGTCGCCCGGTTGGCTGTGCTGGA 441808 28 100.0 33 ............................ GGCCATCCCCTACATCGAGTCCCTGGCGAAGTG 441869 28 100.0 33 ............................ GGACTGGGCGTCCGACAAGGCCCGCCGCTGCCA 441930 28 100.0 33 ............................ CACTGCACTGCGGGCGGCGACCCGTATTGCTAC 441991 28 100.0 33 ............................ CCTTCTCATTGACGCCCGGGGCAGCGTGCTTGC 442052 28 100.0 33 ............................ CGCGCCGAAGGCCGACTGGGTGACCTATGCGGT 442113 28 100.0 33 ............................ CTGCTGCGCGAGCACGACCGCGTCCGGGAGGCG 442174 28 100.0 33 ............................ CACCGTGCGGCGGTGGGTGGACGCGTACCTGGC 442235 28 100.0 33 ............................ CCACCGGGGCGTCCGGGTGGGCCGTGTCCGGCT 442296 28 100.0 33 ............................ CACCAGCACGTCGGGTGCGTTGCCGCCGTACGA 442357 28 100.0 33 ............................ GGTGTGGGTGGTGTCGGTTGCCTCGCCGGCCAG 442418 28 100.0 33 ............................ GCCCGCTGGATCGACTGCGGCAAGGTCGAGACC 442479 28 100.0 33 ............................ CCTGGGCTGGCTCGACCGGATGTGGATGGTCGT 442540 28 100.0 33 ............................ GGCGGTGATCTTCGCGCCGGTCGCGGGGGCGTC G [442562] 442602 28 100.0 33 ............................ GTCGACGCCGCGCATCGTGACGTCCGCGCCACC 442663 28 100.0 33 ............................ GTCGAACGTGGCGGGCTCTCCGAACGGGGGGTG 442724 28 100.0 33 ............................ CAGCCCCGCGACCACAGCGCCCATCGTGAGCGC 442785 28 100.0 33 ............................ AACGACGGTAGCCGGGGCCCCTTTGAATGACGC 442846 28 100.0 33 ............................ CCAGTAGCGGTGGACGATCTGCCCACCGGCCGG 442907 28 100.0 33 ............................ GCACATCCGGCTGACGGCCGGCGCCAATCAGCG 442968 28 100.0 33 ............................ GCTCGGCCGGCGGCGCGGGCACCTGGCGGCGAG 443029 28 100.0 33 ............................ GGTGGGTGTGGTGGGGCTCGATGCCGCGATGAA G [443051] 443091 28 100.0 33 ............................ CTGTCTCCGGCGACGTCGCCTTCGCCCGCATGA 443152 28 100.0 33 ............................ CTGTCTCCGGCGACGTCGCCTTCGCCCGCATGA 443213 28 100.0 33 ............................ CCCGACGAGCGCGGAGGCGTACGACGCCAGCCA 443274 28 100.0 33 ............................ CGCGTTCTTCGCCATGCCCGTCTTCAGCATCGT 443335 28 100.0 33 ............................ GAGCCTCGGAAGCGGCCTGCCGATCGCGGCCGT 443396 28 92.9 0 .G..........T............... | T [443421] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 33 CTGCTCCCCGCGCATGCGGGGGTGATCC # Left flank : CGGCCGGGGCTGGAGGCGGGGAGTCCTGTGGGTGCTGGAGTCCAACAGGCGTGCCCGCGAGTTCTACGAGCGCGGCGGCTGGCTGCCTACCGGGGAACGCCGTGAGGAGCAGATCGGCACCGTGCGTGTGCCGCAGCTCCGCTACGGCGTGAAGTTGTAAGGAAGGGCCCCCTGTTAACGCATACGGTAGAGAAGGGTTCCCCTCTCACTCCCCGCCCCGGGTGCGCGGTCAGGCGGCCGAGCAAAAGACGTACGCGGTGACGGCGAGCTTGCCCGCCGACGGGCTCGCTGCACCGGTCGAGCCGCTCCTCGCGTATCCGGGACGCAGCACCTTCAAGTTCATCGGATCAGCGATTGCTTCCTTCAAATCAGCGCCTGCCGACATTAGGCTGTGCTCGCCCTCGGAACGCGCCGGAGGAAGGGGCATTCGACAGATAATCTTGCGCAGCAAAGTGAAGGAAAACGAGGAAGTTGATCTTTAGCGCCGCAGGTCAAGAAGT # Right flank : CGAACGCGGCGGTCCGGCGGGACTGTCCATGACGTACCCGGATCGGCCCTGACGGTCGAGCCGGACAGCCGCGCAGGCGACGGGCGGTGTTCCCCGTACGAAGAAGGTCCCCAGCATCAGCCGGGGACCTTCTTCCGCGTTTGTTGAGGGGGGAGTCAGCCCAGCGGGCCGGTCCTCTTCGCCAGGTCGACGAAGGACTGCCAGGTGCCGGGGGTGAAGCGGAGAGTGCCGCCGTCGCGGTCCTTGGTGTCGCGCACCAGCACCACGCCCGGCATGTTGTCCGCGACCTCGACGCAGGAACCGCCGTTGCCGCCGGACCTGGTCGACTTCCGCCACTGTGGGGTCATCGGCTCCATGACTTGGCCACCTCCTTGATCAGTTCGATGGACTGCCGGCGGGAAAGCGCCTCGTTCCGCACGATCTCCCACGTCTTCGCGAGCCTAGCAACGTCGGCGGGCGCATCGACGATCTGCGCGTTGAGCTGGTTGTCGGCATGGGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 449161-449921 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000014.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 449161 28 100.0 33 ............................ CGCGCCCTCGATCACCCGGCCGCGCACCGGACG 449222 28 100.0 34 ............................ CCGTGAACCCGACCGTAACCGCGAAGGCGTGGAC 449284 28 100.0 33 ............................ ACGGCAGGCGATTCCTTCGGGTCGCTCTTGTCG 449345 28 100.0 33 ............................ CTGGATCGCGGTCATGAGCCGGCCATCCGCGTA 449406 28 100.0 33 ............................ CGCTCCATCCCCTACGGGGAGGTGCCCAAGTTC 449467 28 100.0 33 ............................ CAACCCCGACGGCGCCCAGTCGGAGCAGATTGA 449528 28 100.0 33 ............................ GGCCGACGACTTCGCCCCAACGGTGGGCGCGTA 449589 28 100.0 33 ............................ CTGCCGAACCGCCCTGACCGTCAACAGCACGGG 449650 28 100.0 33 ............................ CGCGGAGGAGGGAACGTTGTACTGGTCGAGCGG 449711 28 100.0 33 ............................ GATGCTCCGCGACATGGGCGCCCCGGAGTCGGG 449772 28 96.4 33 ..A......................... GGTGGAGTGCGTGTAGAACCATCCGGCCTGGCC 449833 28 100.0 33 ............................ GCGAGTCCTGACCCATGGCCATTCTGGCCCACG 449894 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.4 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCCGCAGCAGTCCGGGGTAGTCGGCATGGTCGTACGTCAGCCAGGCATGTCCGACCCGCCCGGCCAGTTCCCGCACGAGCGTCGAGGTCGGGGCATCGGGGTCGGCGGGGGTGGTGTCGTAGCAAGCGAGGGCTTGTGGTTAGTGATGACCTTGCCGACCTAGACTTTTGCTCGTGCCATACGAGCAGGCTGAGTACCGCCGCATTGCTGACGGCATCGCCGGGCAAATCAGGTCCGGCGAGCTGAAGGCACACGACAAGCTGCCCTCCACCGCCGAACTCGCCGAGAAGCACCATGTCTCGCTGGCCACGGTGAACCGGGCCTTCGGTCTGCTGCACGATCGCGGCCTGGTGTACGGCAAGCAGGGCAAGGGCGTCTTCGTAGCAGAGGCTAATTAGACTGCTGTGGATCGCGGGAGGAAACGCCACCAGGAGATGACCTTGCACCGCAAAGTGAAGGAAAACAAGGAAGTTGATCTTTAGCACCCCAGGTCAAGAAGT # Right flank : CGGTCAGGATGCAGGGCCTTGTTTTGGAAGCACGACTGAGCATCGTCCTGGACCGGTTGGGGTAGCTGCGGCCAGCCAGCCAGATGGGCAGACGTCTCGATTCAATTCGATACACGCGAATAGGCCCATCTCGCTGTTGACCCGATCATGCTAGACGTGGGATATATCCCAGGGGTCGTCAAACGCCTTCAAGACCACCGACGTACGAGCGCGCCTTGGCGATCCCCTTGAACACCGTGAGCCATTGCAGACCGGTTCAGAATCCGATCACGACAGAAGGAGTACGTGATGAACCTCCGGTCCACTCGGCCCCACAAAACGAGGCGCGTGCTGACGGGCGCGGCACTGCTGGCGATGACCGTGGCCATGGTGCCCACGATCGCTTCGGCAGCGATTCCTCACTCCGCCACCGGCCAGATCAATGCCTGCTACACCATCAGTTCTGGTGCGATCCGCGTGATCGACACCGAGGCCGGCCAGACGTGCGACGCTACTGAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 67298-67691 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000023.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 67298 28 96.4 33 A........................... GCCCCCCGGCCACGCCCCGCCGTGCCCGAAGGA 67359 28 100.0 33 ............................ GTGTGTCGAGCGGGTGAACGTTGCGGACGGATG 67420 28 100.0 33 ............................ CACCTGCACCGTGTGCGGGGTGCTCCGCGCGGC 67481 28 100.0 33 ............................ TCAGGCGCTCTACGCGCCGCCTGCCGCGACCGG 67542 28 100.0 34 ............................ CTCATGGGCCCGGATGGCACACGTGGTGATTGCG CG [67556] 67606 28 82.1 31 T....T.....A.........A....T. ATCCGCCCCGGGCGCGCCCATCTCGGTGCCC 67665 27 82.1 0 G....T.T.........-.......C.. | ========== ====== ====== ====== ============================ ================================== ================== 7 28 94.4 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CACGTCGTGCCCGCCACGGCCGGGTTCTACCTCGGCCAGTCCGGTGCCTTCGCGCTGGCGAACCTGCCCGAATCGGAGCCGGCGGGCTACCTCGACGACCAGCTCGCGGGGCGGGTGGTGCTGGACCCGGAGCACGTTGCCGCGCTGGAGCGGACGTGGGAGGCTGTCCGGGCCGAGGCCCTGCCGCGCACCCAGTCGCGCGAGCTGATCAGGAAGCTGGTGGAGGAGCGATGACCGATCCGCGCTGGCGCAAGTCGACCCGGTCGAGCGCGAACGGCGGCGACTGCGTCGAGGTGGCCGACAACCTGCCGGGCCGGGTGCTGGTACGCGACAGCAAGGACGCCGCCGGGCCGGTGCTCGTTTTCGCCCCGTCCGACTGGCGCGCCTTCGTCTCCGCCCCACCGTCCCGCTGACCGCCGCGTGGCCACCCGGGGATGATCTTGCGCGGCGAAGTGAACAAGAACGTGACTGTGGATCTCTAGCGCCCCAGGTCAAGAAGT # Right flank : CCGGCAGCGGCACGGTCACGTAGGCGAGAGGTGACCACCTGACCACCACCCGCCCATCCGCAGCCCCCGGCAACATGAATCTTGGTATGAATCGGCCCCCATAGGGGCCGTTTGGTACCAAGATCTACGGCCGCCCTTCTGCATCTCTGACGAACACGCCTCGGCCGGCCGACGACGCGCCACGGTCCCGCAGGAGCGCCACCGCGAGGGTGGCCGTCGACAACGAGACTGAGAGTGTTCCCGGCGTACGCGGGGGTGACCGGCCTCGCCGGTCGTAAGGTTGGCCGCCGGCAACTGTTGCCTGCGCACGCGGAGCGTATCCCTCGACAGTCGACCTGTGGGCGCGCTCGCCGCCGTATCCTCGCCTGCAATGACTGAAGGAGTGCTGGTCGATGACGCTGGCCGACCTCAATCCCGCCGAGCGGCACCGTCGCGTCGCCGCCACGTTCACCGAGCGCGTGCGCGCCGTCGAAGCCTGGGACGTGCCCGCGCCGGTGGCC # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 154976-153252 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000023.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 154975 28 100.0 33 ............................ GTGACCGTCTCCGCGCGATTGTCTCGCGTGGAG 154914 28 100.0 33 ............................ GCGGGGGGCGGAGCCGGGGCCGGTGGCGGGTCG 154853 28 100.0 33 ............................ CGCCCGGACGTGGACCAGCTTGCCCGCCCGGAC 154792 28 100.0 33 ............................ CGAGGTCGTCGGCTTGGGGGCCGGGGAGGGTCG 154731 28 100.0 33 ............................ CGTCACCTCGCTGGTGCCGGTGCTCCGCGACGG 154670 28 100.0 33 ............................ CGGCTGCTCGTCGACACCGAAGGCGATGAGGCG 154609 28 100.0 33 ............................ CCAGAACAGCGGCAACTGCCCGTCGCCGTCGGT 154548 28 100.0 33 ............................ CCGTGTCAGAATCCTGTCCCATGAACGGGATTC 154487 28 100.0 33 ............................ CCGGTGCGCCGCCGCGACGTCCGTGAGGTCTGC 154426 28 100.0 33 ............................ CGACTCGATGAGCTCTTCTTGTTTGAAGAAATC 154365 28 100.0 33 ............................ CGGTTAGCGGCTGGTATGCCGCAGGATGGAACG 154304 28 100.0 33 ............................ CGCCGCCGGGTGCTGCGGGCGAACACCGGGGAG 154243 28 100.0 33 ............................ CGCCGCCGGGTGCTGCGGGCGAACACCGGGGAG 154182 28 100.0 33 ............................ GCGGGAGTACGTCGGCCTCTGGTACAAGCGGTT 154121 28 100.0 34 ............................ CATCCCGGACACGCCGGTCTGCCAGCTCCCCGCC 154059 28 100.0 33 ............................ GGCGTGGCACTACACCGGGGCCGCCTGCCGACG 153998 28 100.0 26 ............................ GCCTCCTGAAGGTCGTCCGCCGTCCC Deletion [153945] 153944 28 96.4 33 ........................G... CCACATCCACATCGCCATGGCCGACGGGGGCGT 153883 28 96.4 33 ........T................... CGCCACGCTGCCGGTGATGGTCAGCGGTGGGTG 153822 28 96.4 33 ......................C..... CGGGAGCACCTCCCCCAGAGGTGCTGCGGTGTC 153761 28 100.0 33 ............................ GTCCACCGGCAAAGCACCGAGGAGGTCCGACTT 153700 28 100.0 32 ............................ CAACGGTTCTTCAACAGCGACACCGCCGTGGA 153640 28 96.4 33 ...............A............ GCGGTTGACGGTGCTGACGCCGTCGAGCCAGCG 153579 28 100.0 33 ............................ CTCCACCACCGCATCGCCGCCCGCCTCCCTGGC 153518 28 96.4 33 .......................A.... CAGGTGGGCGGTGGCGCACACGGCCGACAGGTT 153457 28 92.9 32 ..............T.T........... CATGGACCGCCGACGCAGTATCGGCCTCGGCG 153397 26 85.7 33 .............--..A..C....... CCACCAGGTGCCGAACGACGGCCGCATGTTCCT 153338 27 92.9 33 ..............T......-...... GGCCGCAGCACATACCAGTGGGCCAGCCCTCTC 153278 27 85.7 0 ..........-.T.T...A......... | ========== ====== ====== ====== ============================ ================================== ================== 29 28 97.9 33 CTGTTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCCCGCGCATGCGGGGATGATCTCTCGCCTGGCTCCCTTCGGCATCTCGAAGTCCTTGCGTCAACTACGTCGAGATTCGCGCGGGTAGCCTCGACCTCGAAGGCCAACAGGTTAGGGAGCACGGCCGCGTCTTCGAGCACCTCGTCGCCACGGCGGCGAGCGCCCGGGAGTCGCGCGACCTGATCCGGGAGGCGATCGACGGGTTATGAGAGGACGGCTCGGGTGGACGAGGTCGACACGACCCGCGCGACCTGGCGAAAGAGCACTCGCAGCAATGGCTCGGGTGACTGCGTGGAGGTCGCGGACGACCTGTCGGGCGGGGTCGGACTACGGGACAGCAAGAACCCGACCGGGCCGGTGCTGACCTTCACGCCGAAGTCCTGGACCACCTTCCTCGAAGGACTCAAAGCCCAGCCATCCACCAAGCCCCAGAGCTGATCTTGGTGATTCGAGTGAACAAAATCCGCACAGTTGATCTATAAACCCGCAGGTCAAAAAGC # Right flank : GACGGAGCGCCCCGTTTGTGCGGGCAGCTCCATTAGCGCCCGAACACAACGACCCCGGGTCGGACAGATCACCCACAGTCACCGACTCCGGCCCAGGCCCCAGCCGACCATAGTGGGGTGAGCCCGGTCGACGGCACTGGCCAGAGGCGCAGCAGGCTAGGGACTGCCCGTTGCCTAACCCAGTTGGGCGAAGGCGTGGTCTGCGTCGGCGACCGCCTCGGGGTGCACGTCGCGTGCGGTCCGCCCGTCGGCGATCTTCTGCCAGTTGGTCCGGGCCAGCACACGTTGGACCGCGATCACCTGGGCGGCTTGCAGTCGGCCCCGGACACCCGGGTCGAGGGCGGCGGCCAAGGCGTCCTCGTCGGCGAGCATGTACTCCAGGAGCCGTCCCGCCAGGCTCGGAGTGGTGAACACCAGACGGTGGAACGCCACCACCTCGGGATGGTCGCTGAGGCCGGTGACGGGCTCGAAGCGATCGAGACCGGCCCGGAAGTGCCGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 155786-155453 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBZF01000023.1 Micromonospora sp. TP-A0468, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 155785 28 100.0 33 ............................ CTGCCCGGCGACCTGCGGGATCGTGTAGACGAC 155724 28 100.0 33 ............................ GCTAGAGCGCACGCCGTAGGATCGACGCCCCCC 155663 28 100.0 33 ............................ GGTCACCTGCGGGCCCGGGTCGAGCAGGTCGGT 155602 28 100.0 33 ............................ CCACCTGTTGCTGATCCTGATCGGCGGGCCCGT 155541 28 100.0 33 ............................ CGTCTCGATGACGCCGCGCTGGAGGTCGTTCTG 155480 28 92.9 0 .....................A.....T | ========== ====== ====== ====== ============================ ================================= ================== 6 28 98.8 33 GTGTTCCCCGCGCATGCGGGGGTGATCC # Left flank : CGCCCTCTGGGTCGACATGACGGGTCGGGCCTTGAGTGAGGATCGGTCGAAGGACATGATCCAGCAGATCGCAGAGGAGTACTCCCGTGGCTGAACTGACCGGTGCACTGTGGCGCAAGTCAAGCCGTAGCAACAACGGCGGCAACTGCGTCGAGGTCGCCGACAACCTGCCCGGCGTCGTCGGCCTACGCGACAGCAAGGACCCGGAGGGGCCGGTGCTGATCCTCGAACCGAGGTCGTGGGCCGCCTTCGTCAAGGGGGTCAAGACGGAGCCGCCCAGCAAGTGAGCCTGCCACCCGCCCGAGGACGCCACCAACAGATCTGATACCACCTCGCAATCAAGGGACAGCTCTGCTCGTACGGGAGTTGCGGACACCCACCGCATAAGCTGCGCCAGACCGGCTGGCTATGGCAGATCACCGACGCGGATTGCGATGATCTTGGTAGGCCAAGTGAACAAAATCAGCCGAGTTGATCTATAGATCCGCAGGTCAAGAAGC # Right flank : CTCGCCTGGCTCCCTTCGGCATCTCGAAGTCCTTGCGTCAACTACGTCGAGATTCGCGCGGGTAGCCTCGACCTCGAAGGCCAACAGGTTAGGGAGCACGGCCGCGTCTTCGAGCACCTCGTCGCCACGGCGGCGAGCGCCCGGGAGTCGCGCGACCTGATCCGGGAGGCGATCGACGGGTTATGAGAGGACGGCTCGGGTGGACGAGGTCGACACGACCCGCGCGACCTGGCGAAAGAGCACTCGCAGCAATGGCTCGGGTGACTGCGTGGAGGTCGCGGACGACCTGTCGGGCGGGGTCGGACTACGGGACAGCAAGAACCCGACCGGGCCGGTGCTGACCTTCACGCCGAAGTCCTGGACCACCTTCCTCGAAGGACTCAAAGCCCAGCCATCCACCAAGCCCCAGAGCTGATCTTGGTGATTCGAGTGAACAAAATCCGCACAGTTGATCTATAAACCCGCAGGTCAAAAAGCCTGTTCCCCGCGCACGCGGGGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //