Array 1 522560-523007 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHSP01000002.1 Vibrio sp. 1-1(7) NODE_2_length_834663_cov_69.561900, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 522560 28 100.0 32 ............................ GTCAAGCGTTGGGTGACCAAGGGGCGCAAGCG 522620 28 100.0 32 ............................ AATAACTGGGCGTTTTTCTTGAAAGCCTCGCC 522680 28 100.0 32 ............................ GCCGCGACTAAAGCCGATACCGCAACCATCAC 522740 28 100.0 32 ............................ CAATACCACATCTTCTATTAGTCGTATTCCTT 522800 28 100.0 32 ............................ ACTCCGAATTCCTGAGTAGACTAACAAAGTGA 522860 28 100.0 32 ............................ GTGGTACATGGCCGTGCTGAGTACGACCATGC 522920 28 100.0 32 ............................ TTTTGATGCACCATGCACCGTACTGTGTAGCT 522980 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGGTAACTTACGTCAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCCGGTAAACCACTGGTGGAATGTTTAGCGGATTTGCAACAAAGCAAGCCGACAGCCTTGTGCTCTTTGCCGTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGCTCACCAGAAAAAAACAGCAAGTTTCCGCTGTTTATTGAGATGCAGTCCCAAAGCACATCTCAAGATGGGAGCTTTGATTGCTATGGTTTAAGTAGCAAAGCGAATGGACAATCCGCATTGGCGACCGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTAAATACAATAAGTTACAATGGGTGGTTTTTTATAAGGTAAAAATGCATTTTTTATCCTAACTAACTGTTGTAACTTATTTTTATTGATTTATTCTATT # Right flank : AGCGAGTGATCGGCTCTTCTTATGTTACCGTTCGTTCATTGTGTTAACGATCACCGAAAACTGATCCACTTTTAGCTTAAAAATAGCTTAAAAAGTTCGCGCTTTATCGCGTCGTTCTAAGATAAACTGCAACATTCATTCATTCATTCATCAATCAAGGAGAAAATTTGATGAAAGCGATTATCTTGATATGTATCACCATAAGTTCCTTTTTAACCTTACCCGCCTATGCCGTTGAATTTTGGCATTCCAATACGGTTTGGGCCGGTCAAGGACAATGTTCGGCTGTCTTTTCATTTGATAGTGAAATGAATGAAATAATCGATCTTCAGCTTTCAGTTTCTGCTTTTAATCAGGTCGGTGAAGAAGTTGCATCGGGGGTTATTGAAATTGCACACTTTGGCCAATCATCAGCTGATCGTTATATTGACGCATACTTAGAGAGCGAGGCTTTTTGTGATGAACAACTAACCATCTTAGTTAAGGATGCTCAAGCCATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 571362-572845 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHSP01000001.1 Vibrio sp. 1-1(7) NODE_1_length_1757469_cov_67.760118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 571362 32 100.0 34 ................................ CAGACTCAAAGTCCTCAGGCTTGCAATAACCAAG 571428 32 100.0 34 ................................ TATGATTTCCTCGGCGCTTGGCTCGTCTTTATAT 571494 32 100.0 34 ................................ TCGTCAGTCAGATTAAACCACTCGCCTTTAATTG 571560 32 100.0 33 ................................ GTGTCTAGATCTGTGAATATTTTTGCGACAGAC 571625 32 100.0 34 ................................ CGTTAAACCGCTAATGTAAGTCGTGGGCACAAAC 571691 32 100.0 33 ................................ TGGGCAATTACGGTTAATAATGAAGCAATTGAA 571756 32 100.0 34 ................................ TTTCTCTAGCCTATCCAGAGCGCGAGAGTTTTTA 571822 32 100.0 35 ................................ TGTAGAGTGGATGCTTTTACTAGCTCGTAATACTC 571889 32 100.0 34 ................................ GTAAGTCTTGCCCTTTAACAGCTCTCCGTGATTT 571955 32 100.0 35 ................................ TTTGATACCGACCATCCGGTTGGCGAAGAGGGCAA 572022 32 100.0 33 ................................ TTGTATTTTCATTGCCCTAGCTCCATCAAATAC 572087 32 100.0 36 ................................ CGAATACCACGCTTCCTTCCTTGCCCGTTTCCATTC 572155 32 100.0 35 ................................ ATAACCCGGCGCTAAGCGAAAAATGCCCGTCGGCT 572222 32 100.0 33 ................................ TAGCAGACGTTAAAGGCGATATTGAACTATTGG 572287 32 100.0 33 ................................ AGGATTAAATCCGATTAAAAACGCTTCTGTTGG 572352 32 100.0 35 ................................ TTTTTCTTGGTCTCGCCGCCATTTCAACTTTCTCC 572419 32 100.0 33 ................................ TATCAAGGAGAACGCGCCAGTGGTGATGTTCGC 572484 32 100.0 34 ................................ GATCTCTCTGCGAGTCATCAATCCTTTCCACCTT 572550 32 100.0 35 ................................ AAGCTAAAAAGAACCGAGCGCATTAATACCAGCAA 572617 32 100.0 34 ................................ ATGCAAAGAAAAGTGATTTGCTGTTATGAGATTT 572683 32 100.0 34 ................................ AACGGATCGGAATGGATGACTCCGGGGTTGCGTT 572749 32 100.0 33 ................................ ATTTTTGTATCCTTGTCTTGTTGCTAAAGTTTC 572814 32 96.9 0 ...............................T | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 99.9 34 GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Left flank : CCATTTGTGATCAAAAAATAAGGAGCGAGCCATGATGGTTTTGGTCACCTACGATGTATCCTTTGCCAGTGATGATGGGCAAAAACGCCTCAGGCAGTTAGCAAAAGTCTGCTTAGACTATGGTATGAGAGTGCAATATTCAGTGTTTGAATGTGAAATAGACTCAACACAATGGTTAGAATTTAAAGATAAACTTTTATCTATTTATGATCCTGAAGTCGACAGTTTGCGTTTTTATAAGCTCGGTAAAAACTGGCAAAACAAAGTAGAGCACCATGGCGCGAAAGAAGCGATAGATATATTCAGAGATACCCTAATTTTATAATCGCTAGCCTTGGGTTCTCAGTAAAATACTGGGGATCTAGCGATGGCATAAGTTCTTTAAAAATAGAGCAAATATTTATTTTTATAGCTTCACTCAAAATAGTTTTCTTCTACCCAACAAAGTTAGCGGCAAACTATAATCTGTGCTAATTTATACCTGCCTTTCACAATAGGCA # Right flank : TCCGCTCCGCGGGGGTAACTGGAATAATGGTTCGGGGCTCGCCTCCTACAGGTGTAATATTTGATCGATGACGTGGCGGTTTTCCTCATGGCAATTTTGTGATGAGCGATTTTTTCGTCAATATAGTCACTTAAATCATGTTTTTATCGACTATATTAGAATTGGTTGTTATCCTGTAACGCTTCACATGGCGGTTAATATCATTAGGTGTGGGGCGATGGGATCACTGTTGGAAGTGAAGCAACTGAGTACGTATAGCCAACAAGGTTGGCAAGCATTAGTTACTGCGTCGTTTGAGGTTGATAAAAATGAATGTATCGCAGTTATTGGGCCGAACGGCAGTGGTAAATCGAGCTTACTTAAGTCGATTACTGGTGAATATTTGGCTGTTCAGGGTGAGTTACGTATTGATGGCCATAAACTGAGCGATTTATCTCTCCAACAAAAATCCAAATTAATTGCTGTAGTCGCACAAAATGATTACGTCGATCCTCGTTTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCCCGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //