Array 1 17994-18449 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000012.1 Nocardiopsis alba DSM 43377 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17994 29 100.0 32 ............................. GCGTTGACGGTGCCGTGGTGGTGGGTGGAGGG 18055 29 100.0 32 ............................. TACCCAGGTATCTCCGATATCCGCGCGTCGGC 18116 29 96.6 32 .........................G... CGTGGGAACGCCACCCCGACCAGGGAGGTACG 18177 29 96.6 32 ............................T TGCTTCTTGCACCATTCGCACATCAACAGCAC 18238 29 100.0 32 ............................. AGCGTTTCCCCCGATACGGCGACGAGCGGGCC 18299 29 100.0 32 ............................. GGTCGGCAGGTTCGTCGGAGGCCTCGACCGCC 18360 29 100.0 32 ............................. AAACCCTGGACGCGCTGATCTGCGAGGTGAAC 18421 29 86.2 0 ........................CCGG. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GTTCCCCGGTGAGGTCGGCGAGGGCGTCCAGGTCGTGGAAGCGCGCTCCCATGGGAGTGGACAGGACCGCGACGTGCCGGCCCTGGTTCTGGAGGAGTTCCACGAGACCGTTCACCGGCTCGTGGTCGCTGGTGGACGCTCCGGACAGGAGCAGGTACAGGGGGCGCTGATCAGTCATGGGACCAGTTTCGGGGGTCCCGGTCGCATCCTCGACATCAGCCCCTGCAACGGCTCAGGGCCCGACTGCAGGAAGCGATCTTGAAGCACTTCGAGGAGTACCTGGGGGTGGGTGGGTCTTGGGGGCTCGGTTCGTGAGGAGGGGAACGGGAGTGTAGGCGGGGCGCTCGTGGCTGTGAGGGGCTCAGGTATTCGTGAGAGCATGTCGGGAAGTGGAAGCGGTGCTGGGCACTGCCGGTGAAGGATGGTCGAGGTCGGCTGGTTCTTAACCGGCGAGTAGGTATCGCGAAGATAACGCTCCACGTTGTTGCAGGTCATTAAGT # Right flank : GGCTGTCCTCAACAGGAGGTCCTCCGGTCAGCGGGCGCTCTCTTCATGGGCGTCGAGAAGGTCGGCCACGAGTCGGCGGGCGTACGCGGTCTCAAGACCGGCGGGGCGAAAGAGGATGCGGTACATGATGGGGGCGACGATGCCGTCCAAGGTCTCTTCGACGGCGGGGGTGTTCTCCCCACGACCGCTCGCGCGGATGAGGATGGTGTCGATCTGTTCGGCCGCGTAGGCGGAGCACCGCCCGGCGTTACCGCCGTCCGGGTCGCCGAGTAGAGCGTCCCGAATGTAGGCCCGGCCCGAACCGGATCCCATCTCGTCGAGGAACTGTTCGGCCCAGGCGGTGAGGTCGGCTCGCAGGTCGCCGTGGTCTTCCGGTTCACCCTCGGGGCGCAGACGTTCCACCGCGACGTCCGACAACAGCTCGGTCAGGTCACCCCAACGGCGGTAGATCGTCGACGGGGTGACCTCGGCGCGTTGGGCGACCATGGGCACGGTGAGGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 32582-32856 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000012.1 Nocardiopsis alba DSM 43377 contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32582 29 100.0 32 ............................. GCACGGGCGCATGAGCTTTGAGCACAGTCACC 32643 29 100.0 32 ............................. TGGGCCCTATGAGTGATCATCAGATGCCCCGT 32704 29 100.0 32 ............................. GTCGGGTGCCGGTAGTTCCCTGACGTGGTTTC 32765 29 93.1 32 A............C............... GTCCGGCCGGAAGGCGGGCCGGCGGACTCCGT 32826 29 89.7 0 T............C..............G | GA [32849] ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 CGTGAGCCCCACGTACGTGGGGATGGACC # Left flank : CGGTGAGGAGACCCCGGCGGACGGGGACCGGGAGAGCACCAACTTCAAGCTGACACGGTGGGACGCGGTGGCCAACGCGTTCCCCGAGCCCCTGACGATCGACACCGAGTCGTTCGATCCGCGTGGCGTGAACTGATCTCGTAGAGGCAGGGGGGCGGTGCGAGGAGTGGTCGCGGTCGGGCGGGTGGCGGATGGCGAACAGGTCTTGCGAGGGCAAGGCCTGGCGCTGTCGCATGCTGTTGGACCGCAGCCTCTCCCCGACCGGTGTCGTGTTCGGAGCGGTGCCGGAATGGGTGCGGGTTCCCGTGGCCGGTTGTTGGTGGTGAGACCGGAGGGACGGGGGCGCTGTGGTTCTAGAGGGCTTCGGTGTTCGTGAGAGCATGCCGGGGAGTGGAAACGGCGCTGGGCGTTGTCGAAGAGGGATGGTCAAGGCTGACTGTTCCTTAACCGGCGGGTAGGTCTCGCGGAGATAACGCCTCGCGTTGTTGCAGGTCATTAAG # Right flank : GCCCCATAACGGCTGGGTGCCGCGTTGTTCGTGACGTTGGCCTGTAGCCAGGGCGTTGGCCTGGAGAGTGTCGCAGCTGCCACTGGGTTAGCCGTTAGGTCTTTCGGCATGGTCGGGGTGGCAGCTCGGACACGGCATTTGTTCAATGGTGCCGCCACGTTTGATGAGGATCATGCGGTAGTCGCGGTGGCAGCGTTCGTTGCCGCAATGGTCGGGCAACTCGTGGTCGGTGTCGGGCAGGGCATCGTCGAGCACGTCGATGAGGTCATCGGTGGTCGGCTCCGAAGCGTCTTCGTCAGGGGGCGGGAGTTCTTCGCACATGCGACAGCGAGTGCGCTGTCCGGTGGCGTCGGCGGTCAGAGTGACGCCGGAATGAACCGAGCACGTGGGAGGGGCACCGGCTCGGGTGAACGGATCGGTATCGGCGTTTGGGTCGGGGGCCGATTCGCGTCGGGGACGTGGAGCAGAGAGAGCCGGGAGGCCTGCGGGGGAGCGGGTAC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTGAGCCCCACGTACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.40,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 38297-38448 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000002.1 Nocardiopsis alba DSM 43377 contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 38297 30 100.0 31 .............................. ACGTGACCGCGTACCTGGACGAGAACCCGCA 38358 30 100.0 31 .............................. CGTCGTGGCCCTCGGTCGCCTTGGTCGTGGG 38419 30 86.7 0 G....................T......TC | ========== ====== ====== ====== ============================== =============================== ================== 3 30 95.6 32 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : TCATCGCCAACGCCCGCGGAGACCTCCTGCTGCATCTGCGCGATGACCTTCCTCAGATCGCCTGGCCCGGTCATTGGTCGGTGCTGGGCGGTGGGTGCGATCCGGGTGAGAGCCCACGTCAGACGATCGTGCGCGAACTGGACGAGGAGGCCGGGTTGGTCGTCGAGGACTTGGTCGAGCTGTTCGAGGTCCCCGATGTTCACGGGTCCGGGCGGCTTCTCACCTTCTACGCCGGAGTGTGGGACGGAGACGCCGAGGCCCTGCCGCTGACCGAGGGGGTCAAGCTCGCCTGGGTCGCCCCCGATCTTCTCGACACCCTGCTGATGCCGCCCTTCATCCGTACCGCGCTCTATCGCTATCTGGAGGATCGTTCCTGACCACGGCGTTGGCCTGAACGCGGTCGGCTTCGAACGGGAGGGCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACATGCAGAAATGACGGGTCGGCCGGGATAGCGTTGCAGGTCAGAAAGA # Right flank : CACTCCTGTCCACGTTCATGACAGTCCCTACCCCTCATCCGTAAGCCAGGTATGCCAACGAAGAGGATCGCGGACGACCTGATGAGGTCGGTGGCCCGGATGCTTTCGGAGGGCGCGATCTCGCCCCGGTCGAAGCGCGAACTCGAAGAGGTGTCTTACGCTCTTCGCACGGTTCAACGGCGCTGGAAGGGTTTCCAGAATGGGCGAGCAGCAGGACGTGCGGGCACTGGACTACCTGTACGAGGCCGGTCTCCTCAAACGCTACAAGCGGACCGGCTGGGTCGTTGCCGGTGTCCCTGACCCGGAGTCGATAGCGGACCACTCGCACCGCACCGCCCTCACGGCGGCCGTCATCGCGGAGCTCGAAGGCGCGAACCCAGAGCGCGCCGCGTTCCTGGCCCTGTTCCACGACACTCAGGAGACTCGGCTGACGGACATCCCCTACATCGGGAAGCGGTACCTGAAGGCCTCCAGCAACGCGGAGGTGACCGCGGATCAGA # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 200558-201013 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000018.1 Nocardiopsis alba DSM 43377 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 200558 29 100.0 32 ............................. AGGAGCCCGGAGGCAACTCCGCGAACAACTCC 200619 29 100.0 32 ............................. CGGCGGATGGTGCGGTCGACCAGCCGGGCCAG 200680 29 100.0 32 ............................. TGCCTAGGTGTGTGGAGGTCGGATCCTCGATC 200741 29 96.6 32 ......T...................... TTGCGTGGTCGAGGATGCCGACCAGCGGCGGC 200802 29 100.0 32 ............................. GCATCAGCAGCTCCTCTTCGCCACAGAGCAAG 200863 29 93.1 32 ......T.........C............ ACCTACGCGCGGACGGTGGAGAAGGCCGAGGA 200924 29 96.6 32 ................C............ TGGTTGATGTCGCCTCCGATGATCCCTGCCCC 200985 29 82.8 0 A.....T.........C.........G.A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTCCGACCCACACGCGAAGGGAACGACCG # Left flank : AGCCGGGGCGGAACGTGCGCTCCAAGGCCGGTTTGAATCGGTCGATTCTGGACGCGGCCCCGGCTGAGCTGCGTCGTCAGTTGGAATACAAGGCTTCCTGGTACGGATCCGAGGTCGCGATCCTGGACCGCTGGTTCCCTTCCAGTAAGACCTGCTCGGGGTGCGGGTGGCGAAACCCAAGCCTGGCCCTCTCCGAGCGGGAGTTCGTGTGTGCTGAGTGCGGGTTGCGGATGGACCGTGACCTGAACGCGGCCGACAACATCGCCGCTCATGCGGTAGCGCCGGATAGCGGCGCCGGTGCCCCTGGTAGAGGGGAATCCGTGAATGCCCGTGGAGGAGGCGTAACTCCTGGGCTCCTTCGAGAGCCCGGGCCGCTGCCATTGAAACGGGAAGGCGCTGTCTCCTCGGGGACAGCGCCACCTCGGCGGGGCGACCCGCCGACGTTCCCCTAGCCCACATCTCGCGAAGATAACGGGCTGCGTTGTCGCAGGTCATTTCCT # Right flank : ATGAACAATCGTTCGTCGCTGTTCTCGAAACGGCCACCACAATCCCCTGGTTGGGCCTCACCCCCCCTTCTCACCGGGGTAGCTCTCATCCCCCTCCTCCTTATCCGCCTCATCACCGCCCTACTCCTGGAAACCCTCCTTGTCTCCCACGGGAAGACGTGGAAGCAGGCCCAGGAGGCGATTACCGGATGCTCCGTTCCCCGAGCACGGTGGTTGTGGGACCCCCTCGGTTCAGCCGGTATCACCCGCCGCCAGCAGCTCTGGGCCGTGCCGACTGGGAGAATGCCCTGGAACTGCACATGATCCGCCTCGAAGCAATCCACCGTCTGCGCCGAGAGTTCGGACTCTTCTGGGCGTGGAAGGTACCTGCGACCGTCTCAATCCGTCTCCGCCGGGGGCCGGATCCCTGAGGCCGCCGACATGGTGGACGACGTCATTGCCGAGAACCAGAGCAAGGAACGCGCGGAGCAGGACTCCACCCTGGCTGATGTCCTGATTCC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGACCCACACGCGAAGGGAACGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.80,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 141257-141811 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000011.1 Nocardiopsis alba DSM 43377 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================================================= ================== 141257 30 70.0 129 ...G..GGG...G..........C.G.T.A AGTCGGTGGGGCGTTGGTGAGTTCTGGTCGGCTCTGTGGGGCTGTGGTAGGGATGAGTGAGAAGCGGAGGCCACCGCCAACCGAAGGTTGCGGGAAGATAACGGCTTCTGTTTCCGCAGGTCATTTTCC 141416 30 100.0 31 .............................. TCTACAGGACCAACAGCCTCTACGGCGGCTA 141477 30 100.0 31 .............................. ACACGTACAGCACGGTGTGGCCTTGGACGAG 141538 30 100.0 31 .............................. TACACCCATGGGGCACACATGGGTCACACAT 141599 30 86.7 31 .........A..T...T............C TGCGGGCCTTGCCCGATCTGAAGAACGCCGC 141660 30 86.7 31 .........A.....TT....G........ AGCCCGCCTCCGAGGATCAGCAGGTCGATCC 141721 30 93.3 31 .........A......T............. CGTACGCGTCCATGTCCTCCACACCACCGCG 141782 29 83.3 0 .........A....T.T........-..T. | T [141809] ========== ====== ====== ====== ============================== ================================================================================================================================= ================== 8 30 90.0 45 CTGAGCCCCGCGCACGCGGGGATGGACCGG # Left flank : GGGACACGGGGCCTCGGGCGTTCCGCTCCCCGCTGCGGGGCCATCGCGCTCTCGAAGGCTATGCTCGCCGCCGCACCTCTCGTCCGTCCCCCCGTCCCTCCAGAGGAGGAGCCGATGCCCCCTGTCCAGATCGTTCGAGCGGCCGCCGTCACGCTGATCGCCGGTGGTGTCGCTCTGGGGCTGGTCCCCGGTGGGCCCTGCGGGGCGGGATGGTGGAGCCCGTCCGGGAGCCAGGGGACGGAGTCCTTCGGCTGGTTCGCCTACACCGAGATCTCCACGCCTCCGGAGGAATTCGGGATCTCCGGATGCGCGACCGCCACGGCGCCGGTGGCCTCGTGGGCGATCGCGCTGCTCGTGATGGGGGCGGTGCTGTTGGTGCTCTCGTTCAACGCCCACCGCCTGGAACGCTCCGAGTGATCGTCGGCGCACCAGGCGATAGGCCGTAGCCGGACTCGCGGAAGGCGAGGGCTTCGGCCCGGGAGGCGGGTCGGGTGTCGTTC # Right flank : GTTCGCCGACGCCCCCATGGGCCCGCCCGCTGTTCGGGACGGCGGACCATGGGGGCGCCTCTTGCGGCAGAGGATGTGCGTGGGCGTTAGACGCGCTGGAGTCGCTGTTCGGCGGCGAAGTCCTCGCGTTCGACGGCGTGGTGGCGGGCCACGTCACGCCAGTGGTTGTGCCGCACGATCTCCTGCGGATCCTCGATGATCTGGCCGCCGAGGAAGACGGAGGAGTCGTCGAAGTGCATCTTGAGCAGGGTCCGGGAGTCGAACAGCCAGTAGTCGTGCCGGGGGAGGCCGGAGTCTTCGGCCCGGCCGCGTTCGAGGTAGCGGATGTCCTCACCCGCGCCGGTGGTGAAGCGCGAGCACCAGACGCCGAAGCGGCTGTAGTCGGTGAGCGGGGTACTGACCACACGGACACGGGAGAAGAGACGGCCCGCGGCGGTGGCCTCTCGGATCATGTCGAGCCAGCTCCGCATCCAGGGCAGGTCGTCCGGTTCGTCGGCGAG # Questionable array : NO Score: 4.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-1.34, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCGCGCACGCGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 144380-145446 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000011.1 Nocardiopsis alba DSM 43377 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 144380 30 96.7 31 .........A.................... TATCGAACGGGTCGACAGGGTCGAGAGCGAG 144441 29 93.3 31 .................-...........T CCATCGCGACCGGGTGGTCTTCGGCGTGGTC 144501 30 90.0 31 .......................A.C...T CCTTGGCCGGGGCGGTGCGGGCCAGGGCGAC 144562 30 96.7 31 .........................C.... TGTGTCCCCACCGGTGTGGGGATGTCGTAGG 144623 30 93.3 31 ...................A......A... GCGAAGATCGGGCGGCCCTGACTCCCCAGGC 144684 30 90.0 31 ................T...........GA CCAACGGCAGCAGCGAGTTCCTCGAACTGCA 144745 30 80.0 31 ...AG....A......T...........GC CACGACGATTGGATCTTTCATCGCTCAGGCC 144806 30 80.0 31 ...AA....A......T...........GT GCGCCCCGTAGGCGCGATCCAGATCCGCGCG 144867 30 76.7 28 G..AA....A....T.T...........G. TCGCCGACCACTCACTCGACGCCGCTCG 144925 30 80.0 31 ..A......A......T........G..GA GTGAGCGGTCATGTCCAGTTTGGCCGGTACT TAG [144930] 144989 30 86.7 32 ....A....A......T............C CGGCCATGGCGGCCCCCGCGAACAGGCCGAGT 145051 30 100.0 31 .............................. TGGCGCCCTTGCCCTGGGCGTTGTTGGTGTA 145112 30 96.7 31 ................T............. TGGCGCCCTTGCCCTGGGCGTTGTTGGTGTA 145173 30 93.3 31 ............................TC GCTGGGCGCGGGGGCCGGCCTGGGTGATGGC 145234 30 93.3 31 ............................GA CGTGCATCGCTGGCCCCTGCCCGACCTGGGC 145295 30 80.0 31 ...AG....A...G..T............T CCCGCCACTTGCTCCTGCCGCCCGCCGCCCC 145356 30 90.0 31 .........A..T................C CGATGATGCAGAGAACAGACCAGATCCCGTA 145417 30 90.0 0 ........T.....T..........G.... | ========== ====== ====== ====== ============================== ================================ ================== 18 30 89.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACCGACGGTGGCCAAGAAGATCGCCCGCCAGGAGGCGTTGCGAGAGGGAGCATGCTCGTTCACGTTCCTGCTCACCGAGCAGGCGGTGCGGTGGGCGATCCTGCCTCCTGAGGGGATGGCCGAGCAGGCGGCCCGTCTGGTGGAGGTCTCGCGGTTGGAGCGGGTGCGGTTGGGGGTGATCCCTCTGGGGACCGTGTTGCCCAGGGGGCCGATGAACACCTTCACCGTCTACGACGACAGGCTGGCCACGGTGGAGATCTTCACCGGCCGGTTGGCATTCCGTGAGCCGCAGGACGTGGAGACCTATCGGGAGCTGTTCGCTATGTACGAGGAGCACGCGCTGTTCGGAGACCAGGCCCGTGAACGGATCCGCTCCTGGTTCGAGGTCTGAGACAGTGGATGGTGGGCGGATAAGGAGACGAGTGGTGTCGGTTTTGTCTGTTTCTCGGGAAGTTGGAAAAACGACTGCTTGCCACTGGTAAGTTTCCAGGTCAAAGAGT # Right flank : GTCACGTAGGTGTCGATGTGGTCTGTCCGAATGCCCTCCCCGTAGCTAGGAAGACCCAGCGTGGATCAGAGGCTGAGAGAACTCATCACCCCGCGCACCGGGCCCATCATCCAGGTGGAACCGGTCACGCAGGGGTACAGCGCCAGCACCACGGCGGTGGTCACCGGTGAGTACGGCCGCGTGTTCGTCAAGGCCACCCCGGACCGGCCGGGCGGCCGGCTGGAGGAGGCCGAACGTGAAGGGCTGATCAACCCCCACCTGGGGGGTCTGGCTCCTGAGCTGCTGTGGCAGGCCCGGGGCCAGGGGTGGTTCGCTCTGGGGTTCGAGGTCATCGACGCCCGGCCGACCGACTACAGCGCGGGGTCACCGGATCTGCCCCGGGTGGTCGAGGCGATGGATCGCATCGCCGCGCTCCCCCTTCCGCGGGTCGCGGAGCCGTGGGTGGAGTACCGGTGGGACCGGGCCCTGGCCGAGGACGAGTGGTCCGTCCTGCGTGGGAA # Questionable array : NO Score: 3.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 146425-147492 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000011.1 Nocardiopsis alba DSM 43377 contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146425 29 100.0 32 ............................. ATCGACCATCCGGCATCGGTGGCGCCGGGAGG 146486 29 100.0 32 ............................. GATGAGCGAGGTCATCCCCGGAAAATGCGTGG 146547 29 100.0 32 ............................. ATCGACCATCCGGCATCGGTGGCGCCGGGAGG 146608 29 100.0 32 ............................. GATGAGCGAGGTCATCCCCGGAAAATGCGTGG 146669 29 100.0 32 ............................. GATGAGCGAGGTCATCCCCGGAAAATGCGTGG 146730 29 100.0 32 ............................. GCATCCCGGACCGTATCCAGCACCTCACCGGC 146791 29 93.1 31 ................T...........A GGGCGCCGAGGTTTCCGGTGAGGTTGCGGGT G [146814] 146852 29 93.1 31 .........A......T............ GGCAAGGGCCTACAAATTCGATAATGCAGAG G [146875] 146913 29 89.7 31 ........T..................GA GCCATTGGAGTGGCCACCCGTAGGCGACGGG G [146936] 146974 29 79.3 32 ...AG....A......T..........TA CCGACGCGGACGCCGCGATAACCTCGGGTCCC G [146997] 147036 29 86.2 30 ...AG....A......T............ GCGAGCTCGAACGCCTTGGCGAGAGCGGCC G,G [147059,147064] 147097 29 82.8 30 ...AA....A......T.........G.. GATCTCGGTGGTGTCTCAGGGAGCGGTGGT G,T [147120,147124] 147158 29 79.3 31 ..AAG.......T.T.............G GGGCACTCTCCCACGTCCACGAGAACGCGCA G [147176] 147219 29 96.6 31 ............................G AGTATCGACAGGCACACAAGATGGCCAAGCG G [147242] 147280 29 93.1 31 ...........................GG CTCGCAACACCTACGCGATCCGCTTCAACCC G [147303] 147341 29 79.3 31 ...AG....A......T..........GT ACTTCGCGGTTCGGCCCGGGTCGTGCCGCCA G [147364] 147402 29 79.3 31 ...AG....A......T.........TG. GCTTACCGTACTTACCGACACCGAACTGCTC G [147425] 147463 29 79.3 0 ...AG....A....T.T...........T | G [147486] ========== ====== ====== ====== ============================= ================================ ================== 18 29 90.6 31 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GTGGTCCGTCCTGCGTGGGAACCATCTGACCCACGCGGACCTGCACCCGCGCAACATCGTGGTGGACACCGACGACCGGGTGTGGGTCGTGGACTGGGCCTGGCCCACCCGGGCGGCTCCGGTGGTGATGCCCTCGACGTTGGCGGTGCAGCTGGTCTCCGCCGAACAGGATCCGGCCGAGGTGGAGAAGCTATTGGCCACCTCCGCGCTGTGGGGGCGATTGGACCGAGGGGCGTTGGTGACGTTCGCGCTCGCGCAGGTGCGTATGCATCGCCACTACGCCCGGCTCCGTCCTGACGAGCGGTGGTTGGAAGCGATGCTGGACGCGGCGAAGGCCTGGCACGCGCATCTGAAGTTGTAGAGACTGTTCCCTGCGAGGGTGTCCAGGGTGGTGGGGGAGTGGTGTTGGGATGGGTGCTTGAGGGGTGCCGGTTTTGTCTGTTTCTCGACAACGTGCAGAAATGGTGGGTTGCTCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : TCCCTGGCGAGGGTGTCGAAGACACGGACCCTCTGCTCCCCATGCATGTGGGGTTGTTTTTGGGAGTGGCGAGGCCCCGGGAGCTGGTGCTTCCGGGGCCTGGTTGGTCTTGGGGGTTATCGGGTGAGGGTGGTGAGGAAGGCCGCCCATTCGTTGGTGGGGAAGGGGAGGTGGCCGTCCGACCTGCGTTTGGTGTCGCGGATGGTGGAGGTACCGGGGGTATCGGCGACCTCGACGCATGCGGACTCGTTCGCGCTGTAGCTGGACTTGCGGAAGTTCAGGGTGCGGGGGGTCTCAGGCATGGTGGGCCTCCGTGCGGCGGGTGGTGGTGAGGAGGGCGGTCCATTCGCTGCTGCTGAAGGTGAGGTGTCCTGAGCCGGGGTTCTGGGAGTCGCGGATGGCCGAGGCGCCGGGGACGTCGGCGACCTCAACGCAGTTCTGGTCACGGGCACCGCTGTAGCTGGACTTGCGGAAGGTGAGGGTTTCGGCTTGGGGGAGTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : GCTCCCCGCGCACGCGGGGATGACCCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19350-20109 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000033.1 Nocardiopsis alba DSM 43377 contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19350 36 75.7 38 ..........G....CA..TT.-..C.C......A.. CACAGAATCCCGCTTGAGAAAACGCACCGGTTTCATCT A [19364] 19425 37 75.7 32 G.......A.G....C..T..T.G.A.G......... AGGCACCACTGCTCCTATGTGGTCGCGTCGGT 19494 37 91.9 36 ...................A.A............A.. GCGGATGGCGTCCGCAGAAGCGGGGTTGTCACCGGC 19567 37 100.0 36 ..................................... CTCCACCATCTGGTGCACGTAGTCGATCGTCGCGGC 19640 37 97.3 35 .....................A............... CCCGGGCGAGCAGGGGACCCTGTCCAGTCATCCAG C [19659] 19713 37 94.6 35 .......T.............A............... GGCACCCAACCGGCTCCGGTGGCCCGCCGCCACCA 19785 37 97.3 35 .....................A............... ACGGATCCGTTCAGGGCGCGTCGCTCGGCGTGGGG 19857 37 100.0 34 ..................................... GGTCATGGCGGCGTTGCTGGAGCGTTGGGCCAAG 19928 37 100.0 36 ..................................... CCGGGTGTAGCGGACGCCGTGGGCGTCCAGGATGTC 20001 37 100.0 35 ..................................... CGGGTGACGCGGGCACGCACCCGCGCCCAGGAGGA 20073 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 93.9 35 CCTTCAACGTAGACGTCCCGAGCAGGGACGTTGAGAC # Left flank : ACAACGATGGGGCCGCGGGTCCGCAGCCTCATCCTCGAACACGGAAGCCACGCGGACGTGCACATCGTCCGTTCACGCCGAGCCGCCGACCGGCTGGTCGAACAGATCATCCGTACCGCGGGCGGCGAGAACTGATCGACGGGGAGGCCGGCCGCGCCTCCCACTGAACACCCGTTCCTCGATCCCACGCGCATCCGCGGCGACCTGTACGCCCGGCCGGAGAAGTCGGCCTCACGCACCGGCTCCCTCAAAGCAGCACGTGTCCGTGGCACACCGCTCCTAGGGACGCTCAGCCGAGTGGTGGGGCGGATCTCCATGGATACCGGCCACCAGAGCACGGAGCGCACACCTCTGAGCGCAGCCACCTACGCCGGACACGACACCTGCACCTAGGCACACGGCCCGGGCCCGACATCGGCAGGTCCGCTCCCCCACACCCCCTCAGCCACGGTCGCCGATCCCCCCGAAGAGGAGATCGGCGACCGTCCATCCCCACCACA # Right flank : CAGCGCGTGAACAGGCAGAACCCTCTGGAAGAGCCAGGGAAACTCTCGCCCCAGGCCACATTCTGGGTGTTTTGTGGGGTTTTGTACTTGGGAACCTCCCGGGGATATGGCGGGCACTTGGGGTTCGCGTTTCAGAACAGGTCGATCGGCATCGGTGTGAGCACGCCCGCGGATTTGCCGCCCGGGATGGGACGACGGTGCGCGGCCGCGACGGTGAGCACTCCCAGCGGGGCCAGGCCTTTCCGCTCCAGACGAGGTGTCGGCTGATCAGCAGGCTGAGGCTCCAGGTTCGGGTGGGTGAGCAGGGTTTGGACGCCGTCCAGGTCCAAGGGGTGCTTCCACACGGGCCAGAGCATGATGCGTTGCCGGTTATGGCGGTACCACAGGCCTGAGCGCAAGTGTCTGCCATCACCGGAGAGCGGCAGCAGTGGTAGGGCTTGGGTGGCCAGCCAGGTCGCGCCGGGTACACCGTTGGGGGTGGAGGCGCCGGTGGTGGTGTC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGTAGACGTCCCGAGCAGGGACGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.70,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 28030-27268 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000033.1 Nocardiopsis alba DSM 43377 contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28029 37 91.9 35 .........T...............G.......G... TCGTACACCCACTGGATACGGGTCGCGTACTGCGC 27957 37 94.6 38 ...................T...A............. TCCTCGATGGAGGAGTCGGTTCCGATGAACTCGTTCAG 27882 37 100.0 35 ..................................... GACCCTCCGTTGGATATGGAGCTGGACGAGGTCGC 27810 37 94.6 35 ....................T..A............. ACGTCGACGGTTTCGATGGGGCGATCGTCGTAGCC A [27784] 27737 37 89.2 35 .........T.........T...A....G........ CGTCCAAGAACGGTGGCCCGGACCGGCATCCCCAT 27665 37 100.0 35 ..................................... TAGATCTCGTTGTAGGGGGCGCCGGTCTTGCCGTA 27593 37 91.9 35 .........T.........T...A............. TGGTAGAGCTGTTTATGCTGCTCCCGGATGTTGGA 27521 37 97.3 36 .......................A............. GACGGCTGCCCCGTGGATCGACACGTTGGAGGCGTT 27448 37 100.0 35 ..................................... GCCCACCAGGGCGCCGGACGCGGCGTCGATCCCAA 27376 37 100.0 35 ..................................... ATCCCCGCGTCGGGCAAAGAGAGACCGGCCAAGGT 27304 37 97.3 0 .....................G............... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 96.1 36 CCTTCAACGCGGACGGCTCCCAAGGAGCCGTTGAGAC # Left flank : TCCGGGGTGGGCTCGGCCCATCTACGCCTGGCCGTCGTTCGCGTTGATCGGTGCGTACGAGTTGCTCATGCGCGAGTTCCGCAACACGGCCAAGAGCGTACGCACTGCGTCCGCAGACGATGAGCGGGACCTTAAGGGGGTGGCTTCCTCACCGCGAGCTGGTCTGCACCTTGTGGATGCGTCGGGGCAGAAGAAGGTTCCCTGCCCCACTCACCGTTCCAGGCCCGAGCCTGGGCGTGGGCTGAGGAGTGGGAACAGGAACACGGGGAACTGCCCGATGGGAAGGCGATCGGTGATCGCTTCGACCGGAAAGAGCGCTGGGGCCGACTCGTGAAGGAACGCGGCCTCTACGAGCGCAGGTCCCCCCAAGCAGGGGGCAGGCGGAAGATCGCCAGGAACTCGCAGGTGACCAGCGCTCAGGTGCGCAAGCGGTGACTCTGAAGCGGCTCTCTCATGACGGTTGGGCCCGTGTGACAGGAGCACACGGACTCAGGCCAGGC # Right flank : GGCATCTGATCAGCAGATATCCGCAGCAGGCATTTGAAAGAAGACGGAAAACCCGTCCAGGCGGGCATTTTGTCGGTTTTCTGCTTGGGAACCTGCTGGGGTTTTCATGCGCACTCCAAGTTCGTGCGGGCCGAGTTCAGTCATCACAGATGCTTGGCGATTGCCGGATCGGCAGACTAGCACCCGGTTCTGTCACATCCTGCCTCTACGGTGTTGCCCGGTGCTACCCACACCGCTGCAACACCCCTTTCACCCCGCTGGTCACCGCCATCGCCACGTAACCCCCTCGCCTTTTGTAAGGAGACGTTGATGTCCAGTCAGTTCCTGGAGTTGTTGTTGGCCGCGGTGGGGCCCGAGCGTCCCTGGGCGGGGGTGTCGGCTCAGGCCGAGTACCGGCCCGCCGCCGGTGACAAGGTGTTCCCGCCCTCCTACCCCAGGGACAAGAGCCAGGAGCAGGAGAATCCGCTGGCCGATTCGCCCTACCTGGCCGAGGAGCACTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGCGGACGGCTCCCAAGGAGCCGTTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 13851-14306 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13851 29 93.1 32 ............T.C.............. ATCGAGACAGCAGAAACAAAACGCGTGCCGCT 13912 29 86.2 32 .....TT...T...C.............. GTCTTGCCGCCCTTCACGTACACCCATCGATC 13973 29 89.7 32 .....T.T......C.............. TGGCGGTGGATCGTGGCGCTCACAGCACGACC 14034 29 86.2 32 .......T......C...........T.T GTCTCCTGCTGTTCCGGGTCAGGCACCTTGGC 14095 29 100.0 32 ............................. CAGAAGCCCGACCAGTGAGCCACCCCAGTCCC 14156 29 96.6 32 ................C............ GAGCTCGACCGGGCGCTCGCCCTCGGTGAGGT 14217 29 96.6 32 ..............C.............. CCGCCATCGAGGACCTGGGCCACGAGTTCGGG 14278 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.5 32 CTGAGCCCCACGCATGTGGGGATGGACCG # Left flank : GTGGTCGTGCCGCGGTACGAGACCTGGGTGGCCACCTCCGGAGGCTCGGTGGTCGGGCTCCTGGCGCTCGACGGTGAGGAGTTGGACCAGCTCTACCTCGACCCGGCGTGGCGGGGGCGAGGCCTCGGGGATCGGTTCATCGCCCTGGCCAAACGGCAACGTCCGGACGGGCTGGCCTTGTGGACCTTCCAGGTCAACGAGCCGGCGTGGCGCTTCTACGAGAGGCACGGCTTCGTCGCGGTCGAATGGACGGACGGGTCGCGGAACGAGGAACGAGAGCCCGACATCCGTTACCTCTGGAGGCTCTGACCGTCTTCTGTTTCCCACACATGGTGAGGAGCGAGGGTGGTGCGTATCGGTAGGGGAGGAGCGGAGGTGGCGGAGTGCTCTGTCCCGGGTCGGCTCGGGGTGGCTGTGGTAGGGATGAGTAAGGCGCGGAGGCCGCTTCGATCCGGAGGTTGCGGGAAGATAACGGCTTGCGTTTGTGCTGGTCATTTTCC # Right flank : GCTTACCGCGCCTGCAGCTCCCTGGCCGGTAATAACTTCATGACGCAGCTCGGGGTCTTTAGCGCTGAGCCAGATTCGGTGTACACGCCTTCGATGCTTCTGGAGCCGGCGACACCTCCCGTTGCCTCTACCAGACCCCTGGCCGTCAACCACCCCATTTGCCACTATCGGTCACACTCCCCGTTTCCCAGGCGCACCACCACCAACACTGCTACTTTGTTGCTCGCAAGACGGCACCGCACCAACGTGCCTGATGTTCCTCCACGCCTGCCCCGGAGTTCGCGTGCCCACTCAGTGGACACTCACCTTCACACCCCCACCCCCCACTTCGATCGATCCGCGTCACCTGCACGCCCTTACCTGCCATCTCCTGGAAACCCCGGGGTCCGAGCACGGCGCCGCCGTCAAGCCCTTCACCACGGCAACCAGCGGCACGGGTCTGGTCTTGAGTTGGTTGGACGAGCCGATCGAACCGGATCTGCCAACACGTCTTGGTAGCC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCATGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 24492-25172 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 24492 30 93.3 35 ...............T..........C... TTCCAGCCGGCCGAGGCGGCGACCCACCAGGCGGT 24557 30 93.3 35 ...............T..........C... GTGACGTGTCCGATGTAGGCCAGACGGCTGGTGAG 24622 30 100.0 36 .............................. CGGTCTCTTTCACAGGGGGAAGTGGGGTCAGGGTGA 24688 30 100.0 35 .............................. GGGACGGGGATCAGGGGTTCGGTCGCGACGTCCCA 24753 30 100.0 36 .............................. GCAGGGCCATCGGCCCCTCCCATCAAGTCTGTATTC 24819 30 100.0 35 .............................. CCGAGCGTGCCCAGGCGTCCGTGTAGGTAGTCCTC 24884 30 100.0 34 .............................. TGCCCGGCGGGCGAGGTGCAGGTGTAGACGTCGT 24948 30 100.0 35 .............................. CCGTTGGTGATGAGGGTGCCGCAAAGGTCGAAGCG 25013 30 90.0 35 ....C...........T.........C... TAGGCAGGGCCGTAGAACTCGTCCCCGCATAGGGA 25078 30 93.3 35 A..........T.................. CGGGGTGGGGCCACGGCATGGTGATGTCATCCCCC 25143 30 96.7 0 ...............T.............. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 97.0 35 GTCCTCAAAGCCCGTACAGGGCATGGAAAC # Left flank : GACCTTGGGGTGGGAGGAGGTCATCAAGGGCGACGAGGTCGAGTTGCCGATGGCCGCGCTCGGCCTTCCGCTGATCTACGACAAAGGAAATGAAGTCCACGTCAGTGAAGGTGAGGAGAAACTGCGCAGAGCCTCACCCCTGTGGCTGCGTCCGGTCGGAGCAGACCACTCTTGGAGGCTGTTCTCCTTCGCATTCCTGAACAAGTTCCTCCCGGGTAAGGACCAGAAGGTACATGTGTGGAAGGACCGCCAACGCGGTAAGGAACTGACCGTCAACACCGAACACGCACACGTTCTGGTAAAAAAATGGATCGACACCCTCGCCCGTGGCGACACGTTCACGCGCTAGGATCCACGGTTCCGATAGGACGTCGGGGGAGCCGGAGTCGAGTAGGTGGATTTCAGCGTCGCACCGGCGCGGCGAGCAGAACCGGAGGATCACTGAAGAATTACGCTCACCCACCAGCATTCCAGGGTACTGACCTGCGGCTTTACCCTCG # Right flank : CGTGGCGTCACGAGCCCAGTAGGGCCGGTTTTCGATACACCGGTGAGACAGCACGATGTCCGGGATCTCGTGGAAGTTGGTCGCGTCATAGTTCACGTCTGGCAGATCAAGGCCGCCCCGAGTGGCCTCCGATCAATGACACGTGGCCTCGGAATCCCATCGCTTTACCGTGTCCATACCGGCTCGAGTTGTACGGTCTGTGAAAGATGAAAGCCTGGCTGGGTCACCACACGACTGCCGGGCACCGGTTCACTTTGAAGGTCGGTTTCAACGGAGACCCGGCGGTCGACTCGCTCGTCCTGGCCTCGCTGTGGCTGGCCTGCTCCTATGGCGGATTCGGCGCTCGCACCCGCAAGGGCTTCGGCAACGTACGCCTGACGTACAAGGGCGGTCCCTTGCCGGAAGGTCCTTGGCGGGAACACGTCCCCGACACTCCGGAGTTCGATCACTACCAGGAACTGGATCACCTACCGGTGGACGGGTCGTTGAAGATCTGCGCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCAAAGCCCGTACAGGGCATGGAAAC # Alternate repeat : GTCCTCAAAGCCCGTTCAGGGCATGGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 3 26205-27148 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================= ================== 26205 25 100.0 40 ......................... CTGCGCTGGATGAGCAGGATCCGACGCTCGGCGCCGTCCC 26270 25 100.0 41 ......................... ACGAGAAGCGCGACGAGATGGCCCGCGACACCCGTGGTCCC 26336 25 100.0 41 ......................... GCCGTCATGGCTGCTCCTCTGTTGCTTCTCTGTGGTGTCCT 26402 25 100.0 41 ......................... GACCGCGAGTTCGGCGGCGGCCCTCGCGTCAGCCCCGTCCT 26468 25 96.0 40 ..........A.............. ATGGGGGTGCGGTAGTGGAGCGGGAGAGCCTCAAGGTCCC 26533 25 96.0 42 ..........A.............. TCACCACCGGCCCCGTTGTAGGCCAGGGTCCACGCCAGTCCT 26600 25 92.0 40 ..........A..........C... CCGGCGTCCTGGACGTGGACCTTCGGGATGACCATGTCCT 26665 25 92.0 45 ..........A..........C... ACCAGCGCCCAGACCGCTTCACGCACCAACGGTACCGGTCGTCCT 26735 25 84.0 40 ..G.......A..........CG.. ATGGAGTCGAAGCTCCAGGGCATGCCTCCGATGACGTCCC 26800 25 92.0 40 ..........A..........C... GCCGCGGTCTCGGCTGCTCCCAACCACGCGTTCACGTCCT 26865 25 92.0 40 ..........A..........C... ACATCAGGGGCCTCTCGTTGCCAGGTCCCCTTCAGGTCCC 26930 25 92.0 40 ......T...A.............. TAGATGTGCTGGTGGGGCGCCACGAGGCTGTCCAGGTCCC 26995 25 96.0 40 ..........A.............. ATCATCTGGTGAGGGGTGCGCGGAGGCACCGCCACGTCCC 27060 25 100.0 39 ......................... GTCTCCGTGTGGCGGACGATGATCGCGGCCACGTGTCCT 27124 25 96.0 0 ..........A.............. | ========== ====== ====== ====== ========================= ============================================= ================== 15 25 95.2 41 CAAAGCCCGTTCAGGGCATGGAAAC # Left flank : AGCACCGATGGTCCGAGGGTCGCTCCGCAGCCGATCCTGGGCGTGGGGAACACGAGCGCCACCCTCGCCGACTTCGCCGAGGACAGCTGGGAGGCGGTGGCCGCCGAGACCGGGGAACGGTACCGGAGGTTCCGTGCCAGTGTGGCGCACAGGTCACCGAACCCCGGTTACAAGCCGCCCATCAAGACACCCGAATACGAAACGGTCATTCACGGTACCGACGACCGCTTCCCACTCAGAGCGCTGGGTCTTCCGGTGAACTACAAGGGCGGAGCCAAGGTGACCGCTTACAAAGAGGGGAGGGACGAGCTGCGCCGTGCCTCACCGCTGTGGTTCCGGTTCGTCGAGAACGAGGGGGAGTGGACCTGGGGGTTGTTCTCCTTCGCCTTCCACAACCCGTTCCTGCCCGCCGATCAGGACCTGAGCATCCGGCTGACCGGCAAGCGAGTCGAGAACAAGAACCCGGGCCGGTGGCACCACCCGACAGACCACCGTGTCCC # Right flank : CGTGGCGTCACGTACTTAGAGGAGCCGGTTCTCGATACACCGGTGTGCCAGCACGATGTCGATGATCTCGCCGAAGCCGATCGCGCCGTAGGTCAGGGCCGATAGAGCCAGACCGCCCCACACGGCCCCTGAGCAACGACACGCGGTCCCGGAACGTGCCGCTTTACCGTGGCTATACCTGCCCAAGTTGTACGGTCCGTGAAAGATGGTGCACGGACTATCCCGCCTTCGGGTGGCGTGAGAGCTCCGGGCACCGCGTTTTCGAGCAGCTCCATACCCCCGAGCCGACGAGAAGGAAATGATCACCTGGGATCTCCCGGTGGACTCCACCATCGCCCGCACCCACCGACACACGCCCGATGCTTCCGTTCAGATCGTGATTCAGGCACCGGCCGTCGCCCAGGCCGCGCGGCGACGCGCGGTGTGCCTCGGAGCCGTCGGTGTCCGGTAGAGCCGGGACGTCGGTGACGTCGTGGCCGTTGTAGAACCGCGCCCCACCG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAGCCCGTTCAGGGCATGGAAAC # Alternate repeat : CAAAGCCCGTACAGGGCATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 31352-31806 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31352 29 100.0 32 ............................. GACATGGGCGGCGAGGATGCGGGCCTGGAGTT 31413 29 100.0 32 ............................. CGGGACTATGAACACTGGGATATCGACCCTAA 31474 29 100.0 32 ............................. GTCCCCACTGCGACGCTCCCTCCGACCAGTAC 31535 29 100.0 32 ............................. GCCTCGTTGGAGATGAGGCCGTTCGCGTAGTC 31596 29 100.0 32 ............................. GATCCTTCAAATTCCCCCGGTCCGGGTTCGCG 31657 29 100.0 32 ............................. CCAGGTCACCGTCCCCGGGCTGGCCCTCCCCG 31718 29 96.6 32 ............................G ACGAGGACGCCGGCCGAGGTCTTGCAACACAA 31779 28 93.1 0 .......................-C.... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : GGCCGGGACGGGATCGACCCCGAACGGCTGCGGTTGCACGACCTGTTGGAGAGCTTCTTCTGGCCGGTACCCGAAGCGCACGCGCCCGGCGGCTAGAACGGAGGTCAGAGCCCTCCACACATTCCCTTCGCCGAGTCGGGTCCGCCTGGGTAGTCGGGTGAGCCGATCCACCAGGTGGCCCCAGGAAGTAGTGACCGGGCCGTGCTGAGACGGGAAGACGGGTCCGGGACGCGTACTGAACAGCCGCTGCTGAGCTTCGCGTACGTGGGGCTGACCCCGCCACAGAAGGTCCTCCGAGTCTTGCCTGCTTCCTGTGTGCACGAGGGCGATCCCATCCTGCTCGGGATGGTCACGGAAACCCATCTCTGCTTTTCTCGGGGTTGTTTAGGCTGTTGGGGAGTGATGTTCGGTTGGACGGTTGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAGAAATGGTGGCTGGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : CTCGCCTCGTCGGGACGCCGGGTCAGCGGTGTTCGAGGGTCGGCCATCCGGCGATGGCGACCATGGTGACTCCGGTGGCGTGGTCGAAGAGGTGATGCACGTGTGCCGTCGCCGTGTCCACCACCCCCTCTCGGACTCTCTGCGGGTCGAGGCCGATCGAGGAATTCACCCGCCCCGACCGTGCGCCGGCCTGGCGTTCGCCGGTGGTTCTCCGACCTCGTGGACGGTGTGGCCGCTACAGGCCGTCTTGGTGACCGTGGCCTGTTCGATGCGCGACACGGTGAACCAGCGCATCGCGTCGCGCAGTCGGCACCACCCGATCAGGTACCACTGCCCGTTGGTAGAGGCGAACAGTACGGGTTCGACGTCGCGGGTGGTCGTGGTGCCCTCCCGCGATGTGTAGCGAATGCGGATCACCCGCTGTTCGGTCATCGCCTCCTCCAACGCCGACCTGGTGGCGCGCGAGGATGAGGGAGGAGCGTCGACCCAGACACGGTGGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 36585-36735 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 36585 29 100.0 32 ............................. TCGCGCCACGTGCGCGGCTCAGGTCTGGTGCG 36646 29 96.6 32 .............G............... CTGACCACGATGTTCGCCACCTCAGTTCCCTC 36707 29 89.7 0 .........................GTT. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 95.4 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : CGTTCTCGCTGCCGACCCTAACGGCGGGGGCGGCCCCGTTCAACGATCGTCTCCGACGTGCTGATCGGGGACAGATGGACATCACGGACAACGTCGGCGACCCGGTGTCGGGGCCATGAGTACGGCCGCTACGAAGAAGCTCTCTCAGTAAGCAGGCGGCATGACCTACACCTACCCGCACGGGACGAGGGTGATCGGGACTTGTGTTCGGTGGCCGAGGGAGCGCTCGTCGAATTGCACGATGGCCGGGCGGTTGGTGAAACGTGATGAGCGGGTGAGGCCCGAGCTCCGATCGTGCGGGTGTGGTCTGTTCGGATGTAGACGATCCGCTCGAGGTGAGAACTGAGTCCTTCGGAGACTGGGGGAGGTGCGAAGCCGGTGGGGTGTTCGTTCTCGGTCTGGTACGGGGCGGGTGTGGTAGGGATGTGTGGTGAGCGGAGGCCGCTTCGCGGCGGAGGTTGCGGGAAGATAACGGCCTCTGTTTTCGCAGGTCATTTTCC # Right flank : GTAGCTCGCCCCTTGGTCTGGGCTGCGGGCCTTGGGGCACACGGTGTGGTGCCGGGTCTGAGCGTAAGGGTCGGACCGGACGCCCCTGGTCGTCGCCCCACCGCCCCACCCCACCCGGCCCTACGGCTCGTCGGTGACTACACCTGCGCGGTGGCGCAGCAGGCGGACGCCTCGCCGGTGGCGCCGGCATTCACCTCCTGGGGTGCCGCTCCCCTCTGGTCGCTGTCGCCCTTGACCACGTAGACCTCCCAGGGCTCCTTGCCGGGACCGTGGACCCACACCTTGTCCTGCACGGCGTAGCAGCACGAGGTGTCGTTCTCCTCGAAGGTGGCCAGGCCGGAGTCCTTGAAGCGTTGGGTGGCGGCGTTCACCTGTTCGGTCTCCTCGACCTCCACGCCGAGGTGGTCCAGGCGGGTCTCCTGGCCGGGCTCGCCTTCGATGAGGACGAGCTTGAGCGGGGGCTCGGAGATGGCGAAGTTGGCGTAGCCGGGGCGGCGTTT # Questionable array : NO Score: 3.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 40615-40947 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000032.1 Nocardiopsis alba DSM 43377 contig_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40615 28 78.6 33 ..CCT....G......C........C.. CTCGAGGTTGATCCGCGTGATGTTCGACGTCGA 40676 28 78.6 33 ..CCT....G......C........C.. CCACACACATGACGACGGCCCCACCCCCGCTTG 40737 28 82.1 33 ..CCT....G......C........... GGTGTTGTGAGCCGGTGACCACGCCCAATTGTC 40798 28 96.4 33 ....................A....... TGCCTACCAACAGCTCGATACCCAGGCAGGACG 40859 28 100.0 33 ............................ TCCCAGTGGCGACGCCACCAACCGTGATCTGGC 40920 28 96.4 0 .........................T.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 88.7 33 CTGAGCCCCACGCACGTGGGGATGGACC # Left flank : CTCGCGGTCGCTCATGTCTCTCCTTGCGTCGTGACGTATGGGAGTCACTGTAGGGGGACTGTAGAGGGGAGGCCTCCGCCGCCTCGGACGGTGGGGACCGATTCTCTGCGGAGGCTCGGCTCTTGGGGAGTGCGCTGAGCAGGGCGTTCCATTCGGAGTCGGGATATTGAGCTCGGCGAGGCCGCGGTGCCGGGGGCGGAGGTCGCTTCCAACCGAAGGTTATGGATGGATGACGGCTTCTGTTTCCGCAGGTCATTTTCCCTGGACCCCACGCACGTGGGGGAGACCTCCCGTTCCCGAGTCCGAAAGGACGTCTATGAAGCTGGACCCCACGCACGTGGGGGAGACCTCCGGAACTTCGTCTCTGCTCCTCGCGGGGATGTCTAGGCTGGTGGGGGAGTGGTGTTCGGGTGGACGGTCGAGGGGTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAGAAATGATGGGTGGGTCGGGATAGCTTTGCAGGTCAGGAAGA # Right flank : CCGTCGACTTCGATCGGCGCCTCATCCGGCAGGCCTGCCGACGCCTCCTCCCCGCGTAGCGGGCATGGGGGAGGCTCCGGGAGCTTTTGCTTCCGGGGCCTCGTTGGTTCCGGGGGTTACCGGATGAGGGTGGTGAGGAAGGCCGACCATTCGTGGGCGGGCAGGTTCAGCTCGGCCAGGGCTCGGTTCTGGGTGTCACGGATGTGAGTGGCGGTACCTTCCGCCACTTCGACACATTGGCCACCGCTGCCTCCGCTGTAGCTGGACTTGTGCCAGTGCTGTCGCTGCATGATTGCTCCTTTGGGGGGGTGTTCGACGTTGTCGGGGGGAGTGTCGGGAGGAGCCGGTCCGCCCCAGGGGTTCAGTGTGAGCGGAGGGTGTTGAGCAGGGCGGTCCATTCGGTGTTCGGAAGGCTGAGTTCGGCGAGGTGGCGGTGTTGGGTGTCGCGGATGGCGGCGCCCTGGGCGGTGGCGCGGGCCTCGACGCAGTTTCCGCCGGTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 29731-30341 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000034.1 Nocardiopsis alba DSM 43377 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 29731 29 72.4 190 T..G.T.....T....C.......AT..T GTCATTGAGGGGCCGTTCGAAGACATCGAGGCCTGCTCCCCGCGTGTGCGGGGATGGCTGAAGTCGGTGGGGTGTTCGTGAGTTCCGGTGGGCTCTGTAGGTGTGTGGTAGGGATGAGTGAGGGGCGGAGGTCGCCTCCTTGTGAATGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCC 29950 29 100.0 29 ............................. ACTCCCAGACCGACCCAGAGCAGGACGGT 30008 29 100.0 32 ............................. AGCTCGGCCTGACGATGGTCTCCTCCACCCTC 30069 29 100.0 32 ............................. ACCCACCCAGTATGACCAGCACCCCCAGCAAC 30130 29 100.0 32 ............................. CGCCCCAGGCGCTCTAGAGACCCCGGGAGGTG 30191 29 100.0 32 ............................. GCTGTCCCGACTTGCTCGGAGACTGCAACACG 30252 29 100.0 32 ............................. AAACTTCGGGAGATCATCCGCGAGGACATCAC 30313 29 93.1 0 .........................GT.. | ========== ====== ====== ====== ============================= ============================================================================================================================================================================================== ================== 8 29 95.7 54 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : TTCGCTCCCACGCCATGTCCTCGGCTCGGCCCTCCACCCATGTGATGTCGTCGCGAGTGCGTGCCCGGTCGAGTGAGGCGTCGTCGGGGTCGATTCCGCAGAGTCGTCCGGTGTGCCCGCGCTCGCGGGCGCGGTGCAGCAGCATGCCGGTACCGCAGCCGACGTCGAGGACGGACGTAGAGGCCATGACGTGGGAGAGGTAGAAGTCATCGCTCGGGCCCCAGGGGTTGAGGATGTCGTAGAGGGCGGCCGCATCGGCGTCGGAGTACATGGCGACAGTGTGTTGTCGGGTGCCCTCGTTTGGCCAGGGTTTTTTGTCGGAATCGTCCGCCCGGAGCAGGGGGCGAAGGAGGTGGGCTGCTGACATCTTTACTGCGCCGACCACCGACACGTTGTCTGAGTTGCCACTGACATCCCCGCTGCGCTCGGACAGGTCGGGGCCGCACCCCCGTATGCGGGGATGGGCTGGTGTAGCTCGCCGAGTATGAACGAGACGAGGC # Right flank : GTCTGCGCCTCCGACGTTCCCGACGTCCTACTCTGCGACTCCTGTCTGAACGCGCTCACCGGTGTCTTGGCCGCCGCCCCTTACCGCTACCCAGCGCCGCCCGGGGCCGTCGCGTCCGCCCGAGCCACGCTGAGGGGCACCCGTGCCGCTCGCCTGGCTCTGGTACCGCTGCTGGGGGTGCGGCGGCTTACCGAGCGGTGTTCGCAGTGTCAGACGAAGGACCTCACCCGGATCACCGAGCGAGGCCCTGTCATGTGTGACCACTGTGGCCTGAGCGTGCAGGAGGCCAACCAGTGAGTGAGGTCAAGAATGGGCGGGTTCGCTTCGCTCTGCACGCACCTGCCACCCACTGCCCTCCCGGCGGAGCACAGGGCGCACCTGCGCCCATCCCGGGCAGCCGGCGGTTCGCCACTCCTGGACCCACCCGCGAGCCGTGGACTCAGCGGGGGCGCCGATGGTGAGAGCATCTAGCCCGACCGGTCGAAACAGGAAGGCACCGG # Questionable array : NO Score: 3.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-2.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 37609-37818 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000034.1 Nocardiopsis alba DSM 43377 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37609 28 100.0 33 ............................ CCGACCGCACCGGCGCCTGGGCCGCCGGACAGA 37670 28 100.0 33 ............................ CCAATTGATGATCAGCAGACCGGTAGTGGTCTT 37731 28 100.0 32 ............................ ACGGTCCCAGCGGATGCCATGCTTCGCCGACG 37791 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTGCTCCCCGCATGTGTGGGGATGGCTG # Left flank : TGGTGAGGGTCTGTGGTGATGCGCTTCCTCGGTACCGTGGACACAATGTCGCGGTAAGCGAGGAGGAATAGCGAGTTTCTGAGACACCGATCCAGCACTTCCGAGTAGACCAATACCTCTGGGACGCCGGCCTCGTCCGAGCTGCCCGTGAGGGAAGCTTCCTTCCATCTGTGCTGCGCGCCTACGTGGAAGGGTGCTCGTGATGGACGTCGAAGATCGCATCGCGGTCTTGCCTCCGGAGTACCGGAGACGGCCCGATGGGTAGGGCGCACGGACGTCTGCTCCGTTGGGGCGAGATCGAGCGGGATCACGGTATCCCGCGGGGAACCCTGAAGTCGTGGGTCCGTCGGGGCCACCTTCGCCTCTGTTCCTCACGAGGATGTCCAGACTGGTGGGGGAGTGGTGTTCGGGTGGGTGGTTGAGGGGTGTCGGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGAGGGGTTGCTCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : GAAGTCGGTGGGGTGTTCGTGAGTGCCGGTCGGCTCTGTGGGGGTGTGGTAGGGATGAGTGAGGAGCGGATGTCGCTTCGTGGTGAAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCCCTGAGCCCCACGCACGTGGGGATGGACCGACCTCCAGGCCCTCGTCCAGGACCCTGATGTCCTGAGCCCCACGCACGTGGGGATGGACCGAGCCCAGACCCCCGGTCCGGCCGGATCGGGAACTGAGCCCCACGCACGTGGGGATGGACCGAGGTGGGCCTGGAGGTAACCGAACTCACCCGCCTGAGCCCCACGCACGTGGGGATGGACCAGCCCGATGACGCAAATCCCCAGGGAGATCCACCTGAGCCCCACGCACGTGGGGATGGACCGGTCCCCTCCACCCAGGCCCCGTCTCCCGAGACCTGAGCCCCACGCACGTGGGGATGGACCGTCCTCGGAGCTGTAGGCGGACGCGGGGATCAACTG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCATGTGTGGGGATGGCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.80,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 3 37949-38526 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000034.1 Nocardiopsis alba DSM 43377 contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37949 29 100.0 32 ............................. ACCTCCAGGCCCTCGTCCAGGACCCTGATGTC 38010 29 100.0 32 ............................. AGCCCAGACCCCCGGTCCGGCCGGATCGGGAA 38071 29 100.0 32 ............................. AGGTGGGCCTGGAGGTAACCGAACTCACCCGC 38132 29 96.6 32 ............................A GCCCGATGACGCAAATCCCCAGGGAGATCCAC 38193 29 100.0 32 ............................. GTCCCCTCCACCCAGGCCCCGTCTCCCGAGAC 38254 29 100.0 32 ............................. TCCTCGGAGCTGTAGGCGGACGCGGGGATCAA 38315 29 100.0 32 ............................. GACAACACCTGGCCGCCGGTCGCGGTCTCCTC 38376 29 100.0 32 ............................. GCGGCGCCATATTTAAATATGCCCCACGCTTT 38437 29 96.6 32 .....T....................... ACCTTGGTGACCCCGGCCCAGTCGGACTCCCA 38498 29 79.3 0 ....A....G..T...C........GA.. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.2 32 CTGAGCCCCACGCACGTGGGGATGGACCG # Left flank : GGTCCGTCGGGGCCACCTTCGCCTCTGTTCCTCACGAGGATGTCCAGACTGGTGGGGGAGTGGTGTTCGGGTGGGTGGTTGAGGGGTGTCGGGTTTGTCTGTTTCTCGACAACTTGCAGAAATGAGGGGTTGCTCGGGATAGCGTTGCAGGTCAGGAAGACTGCTCCCCGCATGTGTGGGGATGGCTGCCGACCGCACCGGCGCCTGGGCCGCCGGACAGACTGCTCCCCGCATGTGTGGGGATGGCTGCCAATTGATGATCAGCAGACCGGTAGTGGTCTTCTGCTCCCCGCATGTGTGGGGATGGCTGACGGTCCCAGCGGATGCCATGCTTCGCCGACGCTGCTCCCCGCATGTGTGGGGATGGCTGAAGTCGGTGGGGTGTTCGTGAGTGCCGGTCGGCTCTGTGGGGGTGTGGTAGGGATGAGTGAGGAGCGGATGTCGCTTCGTGGTGAAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCATTTTCC # Right flank : CCGCATTCGGGAAGGCGGGAGGCTGACACAGAAAGCCTCTGGCGGTCGGATCATGGGATGAATGACGTCACAAGTTCTTTTTCATTCCACCGACATCGCCTTCAGGAGGAGGCTAGGGTGTCTGTGTGGGTCGGATGTCTCATGGAAAAGCAGTAGCGATAGTCGCCGCATCCTGCCTGATGCAGGCGACCGCAGCGATGGCCGGATTCACCGCCACGCCGACCCTGTGGCAACTAACGATGCTCTCGGCCACCACCCTCCTTGCGGGGGGAGTAGCTTACCTGGGCGTCTTCTCAAAAAATCGAGTTATGAGACGTGGTAAAAGAGCCGCGGCTAAGAGCTCATCTCAAAAGTCCTCGCTGTGCTTGGCCAGATGCTTGTAGCAGATGAGGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCACGCACGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 1707-1180 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000035.1 Nocardiopsis alba DSM 43377 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1706 30 96.7 31 .............................T CGTCCGCGGCGGCGACCGCCATGCTGATCGC 1645 30 100.0 31 .............................. GACCTACGCGCCCTATGGGCAGCAGACGGCG 1584 30 96.7 31 .............................A GTGCGTCGATGATCTGTGAGGATCTTCGGAT 1523 30 100.0 31 .............................. CACCGTCGAAACCAAGATGATCAGGGTCAAC 1462 30 96.7 31 .............................C GTGCGGCGGCGAATCTCCCCCGTGCGAGTGT 1401 30 96.7 31 .............................A CCGTCTCCGCGAACGCGGCGAGTTCCGGATC 1340 30 100.0 40 .............................. CCAGGGTCGCCGGAGCGAGGAAGAAGAGGCTGAAGGCGTA 1270 30 90.0 31 ........................AT...T GGGCCTTCAACTCAGCCCACCGGGACTCTCC 1209 30 76.7 0 ......T......GG........A.CT..A | ========== ====== ====== ====== ============================== ======================================== ================== 9 30 94.8 32 CTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : GTCGATACCCGCTGGGACCGGTTCGCCACCCAGGAGGAGATCCCGGCTCTGCGGGGGGATGCTCTGACCCACGCCGACATGCACGGCCGCAACATTCTTCTCGACGCCCAGGGCCGGGGGTGGGTGGTGGATTGGGATTGGCCGACCCGGGCCTGCGCCGCGTTGATGCCGACCATGCTCGGTGTGCAGTTGGTATCGGCCGGCCACATGCCCGAGTCGGCGCTGGAGTGGGTGTCGAGTCTGAAGGCGTGGGAGATGGCGTCGGAGCGGGAGCGGTGGGTGTGCGCATTGGTGAATGCTCGGATGTATGAGGAGTTCGCCCGCTCTCGGCCCGAGGAGGGGTGGTTGGGGGCGTTGTCCAAGGCAGCGGATGCTTGGGTGGAGTGCCTACGCTGATCGGTAAGGGACTCTCGTAGAGATCGAGGGGTGTCGGTTTTGTCTGTTTCTCAACAACTTGCAGAAATGACGGGTCGGTCGGGATAGCGTTGCAGGTCAGGGAG # Right flank : CGAGGTCGCCGCACTGCTAATGCGGTTGGGGCTGTTCTCCGCATGTGGGGGGATGGGGCGGGCGCGGGTCTGTTGGGGGTGCTCTTGGGCCCGTGGCCGAGGCCGGTCACGTGGTTCATGGTGACCGGCCTCGGGGCTCGACGGCTACGAGCGGGGGCTTAGGCCGAGGCTCCGGCCGTCGCCTGAGGTGCTCAGCCCGTGTGGACCGCGCTGAGCAGGGCGTTCCATTCGCGAGCGGGCAGGGTGAGTTCGCTCAGGTCGCGATTCTGGGTGTCACGGATGTGGGTGGTGCGACCTTCCGCCACCTCGACACAGCTTCCGTTGGCCGCGCTGTAGCTGGACTTGTGCCACGTGGGCTGTTCGTGGGTCATGGTTCGTCTGCTCCCTTCGGGCTGGGGGAGTTCCGGTTCGGGGGTCAGCGGGTGCGGAGGGCACCGAGCAGGGCGTTCCATTCTCCGCAGGGGAGATGGAGTTCGGCGAGGCCGCGGTGTTGGGTGTCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5158-4402 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000035.1 Nocardiopsis alba DSM 43377 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5157 29 100.0 32 ............................. ACAGGTCTCGTCGACGCGGCCCGGGGTCCGTC 5096 29 100.0 32 ............................. CTCGGGCTCGGGCAAGAGCACCTACGCCAAGC 5035 29 100.0 32 ............................. CGTCCTCGGCCAGCGCCTCGGCCACGTCCCAG 4974 29 100.0 32 ............................. TCCTCGTCCTGGAGGTCGCCGGGGTACAACAG 4913 29 100.0 32 ............................. CCCGGAAGGTGGGCGGCGTTGTCGTGGAGTTC 4852 29 100.0 32 ............................. CCGACCGGGTCGAGGGTGGCGCCGCCCGTGAC 4791 29 100.0 25 ............................. GGGCTGTGAAGGCCCGCGCGTCCTA Deletion [4738] 4737 29 93.1 32 .C......................G.... TCCGCCACCCCACCCGTCTCCACCGCACGGAG 4676 29 96.6 34 ........................G.... TTCAGTTCTCCGTGACGGATCAGGTCCCGCATCG 4613 29 100.0 32 ............................. GCGGTCCGCGTGATGGCGTCCAACTTGGGGTC 4552 29 96.6 32 ..........................T.. TCGTCGACCTGGGCTTGCCGGCGCGCCCGCCG 4491 29 86.2 32 ................T.......GA..G CTGCGGGCCATGCTTTCCCCCGTTGGTACTGC 4430 29 65.5 0 ...AG....A......T....G..CGTTG | ========== ====== ====== ====== ============================= ================================== ================== 13 29 95.2 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGGGCGATCTATACGGCCTCCCATAACAACGTGATGATCAGGCTTCTGGACGACCTGTGGGACAAGACCGACCGGTACCGGCGGATCGGCCTGGAACTGCCCGCGGGCGCCGAGCCGCGCACCATCGACCAGAACCAGCACCACGAGATCCTGGAGCTCGTCGTCAGCGGTGATGGTGCCGCCGCGGCCGCGCTGGTGCGCTCCCACATCCTCAACAGCCTCGGCGCCGCGGTCACGAACGCTCTCGAAGGAAGGGAAGACGTCGCCTACCACCCTTTCTTCGGGTATTCGGTCTGAGGCGGCACGGAGTGGTGGCGCCACACCGACCTGAGTACTGCGCGCGAGGATGGGCTCCAAGACTTCGCCTCTGCTTCTCGCAAGGATGTCTAGGCTGAGGGAGTGGTGTTCGGGTGGATGGTTGAGGCGGTGTCGGTTTTGTCTGTTTCTCGACAACGTGCGGAAATGATGGGTCGGGCGGGATAGCGTTGCAGGTCAGAAAG # Right flank : ATCTCGCTTTGTCCGAAGCAGTTGTAGAACCCGGTTGTCCCCACACGTAGGCGCGGATGCCCCTGGCCGGATCATTCGCCTTTCAGGCGATCACGGGCGCGTAGCACCAGGTCCAGGGCGGCTTTGCCGTTCACCGCGTCGCGGTCCATGGAGTCGAACACTCGACGGTAGGGCTCGACCGCGTCGTCGTCGGTCAGGTCCAGCTCCGCGCCGATGGTCTCCACGATCACCCGTTCGTCGTCGTAGATCCAAAAGCCGTGCACAGGTGAGGCCGACAGCGCGGTCCCCAGGGGCACGATCCCGATACGTCCCCGCCCGGTGCGCACACATGCGGCGAGGTGATCGAGTTGGTCGGCCTGGACTCGCCTGCCGGCCTGGCGTGTGTACAGCGCGGGTTCCCACAGCAGGATCCGTAGCCCCTGGCGTCGCACGTCCAGGATCGAACGCCGTTCCATGCGCTTGCGTACGCCGTCCTCGATATCGGTCGGCGTCCCGTAGAG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 10248-9424 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000035.1 Nocardiopsis alba DSM 43377 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10247 29 100.0 32 ............................. CAAAATATTCCCCAGCCCCGACGCTTTCTTGG 10186 29 100.0 32 ............................. GCATGATGATGTAACCGCCGGATGCGGCACCG 10125 29 100.0 32 ............................. TATTGTTCCCCTGGTCCGACTGGCAAGCATTC 10064 29 96.6 33 ............................G CCCCGCATCCGGAAGCGAAAAGCGAAAAGTGTG 10002 29 96.6 32 ............................G AATAAAGTCGGGCCGCTTCACTATTCTCTGCA 9941 29 100.0 32 ............................. TCAGAACCTGGATCCGGGCACGCCCGTGGAGG 9880 29 100.0 32 ............................. GTACCTCCGAACGTACCGAGGTGTTGTGGTCC 9819 29 100.0 32 ............................. CGACCGGGCCCGGACCAACCCTCTCGGGCCCG 9758 29 100.0 32 ............................. TCCCGTACTGCTGCAGTTCGGTGAAGCCTCCG 9697 29 100.0 32 ............................. GCCCCTCGGTGGGTTCGCGGGGAACCCGAGGG 9636 29 100.0 32 ............................. GCAGGGTTCGGGTGCGGGCTCGCCATGACCGG 9575 29 100.0 32 ............................. GACTGATCACGCCGACCCGGGCCGTCCCGGAT 9514 29 96.6 32 .........................A... CGGGTCTGGCTACCCGGTGCGCACCCCCACCT 9453 29 86.2 0 ........T.......T........T..G | G [9428] ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CGTTCCAGAGTGTTCGCGATACCGTCTTCGCTGTCCGTGCCGGTGGTGAAGGCGTCACGGATGTCGTCGAGGGCGATCCCGGCGTCGGCCATCTTGCGAATCCACAGTAGGCGGATCATGTCCTCGTACCCGTAGCGACGACGGTCATCGCTGCCCCGCTCAGGCTCGGGAAGCAGCCCGATTTCGTGGTAGTGGCGAATCGCCCGTGGCGTGGTGCCGGCGAAGGTCGCCGCGTCACCGATCTTGACCTGGCGGGGTGGTTTGAAGGACGAGTGCATGAGCGGGGGCCTTTCCTCAGGGGATCGGGACGTGAGTCCACTGGACCACATGACGTTACGGAAGGTGCAACCTCGTACACACCGCCCCGTGCCGATTCCAGGCGCTCTACGCTGGCGGGGGAGTGGCGTCGGGTGGGTGATTGAGGATTGTCGGTTTTGTCTGTTTCTCGACAACTTGCAAAAACGGCGGGTCGGCCGGGATAGCGTTGCAGGTCAGGAAGA # Right flank : ACCTCCGAGGAGGTGAGGGGCCTCCACCGGATCACCCACTGGGCGATCTCGGTGAAGGGCCGTTCCACCGGGTCCGGTCAACGGGAACCGGCCCGGATGAGCCGGCTACCGGAACCCGGCGGGAATCGTCATGAGGTCGATTCCCCACAGCAATGGCAGCAGGAACAGCGTCCCCACGACGATGAGGACGAGGGCGAAGAGGTTCAGCCAGAACCCGGTCCTGACCATCTCCATGATCGTCACCCTGCCTGTGCCGAACATGATCGCGTTCGGGGGAGTGCCCACCGGAAGCATGAACGCGCAGTTCGCGGCCATCGCGCAGGGGACCATCAACGCGTACGGGTGGATGTTCAGGGAGAACGCGAGGGCCGCGATGACCGGAAGGATCATCGTCGCCGTCGCGGCGTTCGAGGTGATCTCCGTCAGGAACAGTACGAGCGCGGTGGCGAAGATGATGGTCAGAATGATGTTGACCCCGTCGAGCACGCGCAGCTGCTCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 12012-11373 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000035.1 Nocardiopsis alba DSM 43377 contig_35, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12011 29 100.0 32 ............................. CACCCGTCGACCACCAGTGATATGGCGGACCA 11950 29 100.0 32 ............................. CGTGCTCACCCGCCGGGAGGCGGGGAGGCCCC 11889 29 96.6 32 ........................C.... CCCGGCGGTTCGCTGTGGACGGTCAGTGGCGG 11828 29 100.0 32 ............................. TCCACGTTCGTGGTGAAGCCCGGCATCGTCTG 11767 29 100.0 32 ............................. CGGATCCCCGTCACCGCCAACGCCGGCTACTA 11706 29 100.0 32 ............................. ATCAGCACGACCACCGGGGGGACACATGCACG 11645 29 96.6 32 ........................G.... CTGATCACCGCCCAGGCCTCTACCGAGCACGA 11584 29 93.1 32 ..............T.........G.... AACCGGGGCGGGGGTTTAGCCCCTCCCTGCCC 11523 29 96.6 32 ........................G.... GCCGCAGTGACATGGGGGTCCGTGGTGGAGGC 11462 29 96.6 32 .......T..................... TCGGAGGCACCCTGGTGGAACGCACATCTCAG 11401 29 89.7 0 ..........T.............G...T | ========== ====== ====== ====== ============================= ================================ ================== 11 29 97.2 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CCGGAGCTTGTCGTCCTTGGAACCGATGCCGCTGTGCAGGACGTCGAGGTCGACCACGTAGGGGGAAAGCGAGGAACTCATGGTGGGAGATTAGCGATCGCCTACGACAGACGGGTGGGCATGTTGTCCTGGCTTCGGTGATGCCTGTGGGTGCGGGTGTATCGGCGGGCGGGCGGTGGCTGTAGCTACGGTGGCGGGTTGTCCACAGGCTCGGAAGATCCCCCTTCTTCTTTGAAAGAGAGCGCCCTAGCCTGGAAAGGTGTTCGACTTTCTCAGCGTCTCCCACGGGCATGTGTCCTTCGACGTCGACGAGTTCTTCGCCTGTTCCCTGAGCGACCTCAGATGATCTTCGCCTGCCGCTGCCTCCGAACAGGTGGGGGTGACTAGGTTGGTGGGGGAGTGGTGCTGGGGTGGATGGTTGGGGGAGTGTCTGTTTTGTCTGTTTCTCGACAACTTGCAAAAATGGCGGGTTGGCCGGGATAGCGTTGCAGGTCAGGAAG # Right flank : CAGACTTGTGCTCTAGGTAGCGGGTGAGTTTTGAGCGGATAGTTCTATGGCCAGTTCCATGCAGCGCCATTGGGCCGGGGAGGCGTCGTAGGGCATTTTGCCGATGGCTTCGAACGCGCTCATGGTGCCTGCCTCCCGCCTGCCGGAGCTGATGTCGGCCTCGTCGTCATCGGTGGGCTCAGGGTGCAACGCGTCCCAGGCGTCGAAGAGGGCATCGTCGTCCTCATCCAGACCGGATTCCTCGATGACGGTCTGTAGGGCGCTTTCAAAGGTGTGCCGCTCGACGGCCACTTGAGCCACCCGTGGATCATCGACGGCGACACTGTCATCGAGCGCCTCCTCGGCAACGTCGATGCGGTCGGAATCCTCCCGCAGAGCAGGATGCGTGGCCAGGACGATGAAACGGGTGGCCTGGACGGCCGCGCCGAGCGGGCCGAAGATCCGTTCAGTGACCAGCAGAGTGTCCAGGTCCGCCTGACGCAGGGAACCCTCGGGCAGGT # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12401-12611 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000036.1 Nocardiopsis alba DSM 43377 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12401 28 100.0 33 ............................ GCATTCGTGGTCGGGCAGTCGGGGTTCGTGGGT 12462 28 100.0 33 ............................ GGCCCCGCCCCTTTCGGGGGCGGGGCCTTGTGG 12523 28 100.0 33 ............................ CTCGCCGCCTACATGAACGTGCTGGAGGACGCC 12584 28 92.9 0 ..........C..........G...... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 98.2 33 CTGAGCCCCATGCACGTGGGGATGGGCC # Left flank : GGTGGCGCGGCGGTCCCGAACCTATGAGGAGTACGAGACCGCCTTGGCCGCGACGCCCACCTCGGGGATCGACCATGTCGGCCTGGCGCTCTTCGGGCCTCGCAACGCGATCACGAGGCTGACGAAGAGGCTTCCCCTGCTGGCTTGAGTCGAGGGCGATCGAGGGGAGGGGCATGGCTCAGGGGCGATCGCCCCGGCGGGCCGGTGCCCAGCCGGGTGTCGTAGTTCTGCCCAGGTAGGTCAGTGCCTTTTCCCTGAAGGCGGCCCGCAGTACGTCCATGTCCACTCCCTCGTACGGCCGGGGCGTCGGTCGTGTGGACACCGTGTTCTCGAAACAGGGTCGAGCCCGGATCCTCACGACTGTGGAGGGGCAAGTAGGTGAGGTGTCCTCTCCCGGCTTGCTTCGGGGCGGGTGTGGTAGGGATGAGTGAGGAGCGGAGGCCGCTTCGATCCGGAGGTTGCGGGAAGATAACGGCCTCTGTTTCCGCAGGTCGTTTTCC # Right flank : CAGATCCGAGCCCGTTAGTGTCGGGGCATGGCCTCTGATCCCACGGAATCCTTCGCCCGTCCCCGTGTTGCCGCCGGCGCCCTGTTCTTCGATGAGCAGGGGCGGGTGATGATGGTGGTCCCCACCTATAAGGACTATCTGGATATCCCCGGCGGCTACATCGAGCATGGGGAGACCCCGAGCCAGGCCGCTGCGCGTGAGGTGAAGGAAGAGCTGGGCATCACCCCGCCTATCGGGCGGCTCTTGGTCGTGGACTGGGCGCCGAACCTCTCCGAGGGAGACAAGCAGCTGTTCGTCTTCGATGGGGGAGTCCTCGATCGGCGGTGGCTCGACCAGATCGCTTTGGACCCGGCTGAGCTGGCCGGCTATGAGTTCCATGAGGTGGCTTCGATCGAGACGGCGACGATCCCGCGGCTCGCTCGCAGGATCGTTCAAGGGGCTCGTGCGCGTCGTGAGGGGACGACGGTCTATCTGGAGAACGGCGAGGCCGTTCAGTAGTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCCCCATGCACGTGGGGATGGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 16992-17814 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000036.1 Nocardiopsis alba DSM 43377 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 16992 30 100.0 31 .............................. GCACCAACACCGTCGACACCGCCACGATCAC 17053 30 100.0 31 .............................. TCTGAAAATCGCATCCTGGGTCCAACATCTG 17114 30 100.0 30 .............................. CGCTTGATCCAGCCACGGAAAATCGCCGAA G [17143] 17175 30 100.0 31 .............................. TCGTGGTGTAGGTTTCTATCTCGCTCTGTTC 17236 30 100.0 31 .............................. CCCCCGACACCGGCACCCCCGGCCGCACCCC 17297 30 96.7 31 ............................A. AAACACCGTGGTCATCAACACCACCAAGTTC 17358 30 93.3 31 ............................TT TGGCGGATGCCGTGGCCTCGGCGGCGAACAA 17419 30 100.0 30 .............................. TCCGGCCTTGTGCGCCCTGTCCCACCTGCG C [17445] 17480 30 96.7 31 ..........C................... CCCGAGCGGCCTACGCTCAGGACCGGGCCCA 17541 30 96.7 31 ..........C................... CCCGAGCGGCCTACGCTCAGGACCGGGCCCA 17602 30 96.7 31 ..........C................... CCCGAGCGGCCTACGCTCAGGACCGGGCCCA 17663 30 96.7 31 ..........C................... GGTCATCGATGTCGGAGTAGGTCGGTCCGCG 17724 30 93.3 31 ..........C..................C GGATCCGGTTGGCCTCCCCGGTCTACACGGT 17785 30 90.0 0 ..........C..............T...T | ========== ====== ====== ====== ============================== =============================== ================== 14 30 97.2 31 CTGCTCCCCGTGCACGCGGGGATGGACCCA # Left flank : TGGGCTTCCGACGCGGAGAACGCCCGGGGTTATGAACCGCGACCCGTGGCCGGTCCGTCGGCATGGCGTGCCGAGAGCTGGTGGATCGATCAGGCCGCCGAAGCGGCGGCCAGGGGGTTGACACCTGTTGGTGCCCTTCGTGAGCGCATCGGGATGCCCGAGGATCCCGTCGGGGGACGGCTCGATTCAAGCGACGACGAACTCATTGCTGCCTCGACGAGAGACCTCCGACAGATCGCCAGGCCGACCTGAGCCCCACGCGCGTGGGATGGACCGACCACGACAGTCGACCGCGCCGGACCAGTTCACCTGGGCTCCACCCACGCCGGGGCGATCCCATTTTGTCCAAGCAGCCCCTGAATCTGCCCCCTGTTCCTCGCGAAAATGTCTAGGCTGATGGGAGTGGTGTTCGGGCGGGTGGTTGCGGGATGTCTGGTTTGTCTGTTTTTCAACAACGTGCAGAAATGACGGGTCTGCTGGGGTAGCGTCGCAGGTCAGGA # Right flank : TGACACACGTGGTGCGGTGGTCAGGTGTTCTTTTCCGGAGGGCCAGAGGAGGCACCACGGTCAGCGTCCGACCGCTCCATCGATCTGTTCGCGGAGGATGTCGGCGTGGCCCGCGTGGCGGCCGGTCTCCTCGATCATGTGGACCAGGGCCCAGCGGAGGCTGGGCGCGGGGCGGCCCGGTCCCGGTCGGGGGACGGGTGCGCCGAGGTCGGTGCACCCATCGAGCACTCTGTTCGCCCGCTCGACCGTTCGCCGGTAGCGGGCGACGACGTCGGCCCCGCTGTCCGCGGGAGCGGCCTGGAAGGTCGCCTGCCAGTCGGTGACCCGGTCGCCGAGGAACATCGCGTGCTCGACGAAGGTCAGGTGGTGGAGCAGGCCGAGCAGGTTGGTCCCCGAGGGCACTCCGGCCGTTCGGGCCTGCGGCTCGGGGGCGTTCTCGACCTTCGCGGCGATCGAGGTCCGGAGGTAGTCGAGGAACCCGCGTAGGACCTCCGCTTCGC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGTGCACGCGGGGATGGACCCA # Alternate repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24910-25489 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000036.1 Nocardiopsis alba DSM 43377 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 24910 30 100.0 31 .............................. ACGATTTCGTCGGTGGGGCTTTCCAGCAGGT 24971 30 93.3 31 ............................TC CCGATCACAGCGCGTCGTACACGCACCCGAA 25032 30 96.7 32 .............................C CGGCCCACCGGCCCGGCCGGTACAGACGCGAC 25094 30 100.0 31 .............................. GTGGGACGACCTGCGTGCCCAGGCCGACCCC 25155 30 96.7 31 .............................G TCGACCGGCACAGCTACCTCGCCGAGCGGAT 25216 30 96.7 32 .............................C GGGTGGCGGCCTGCTTGGCCTGGACCGCGTCA 25278 30 93.3 31 ............................GG AAGCCCAGAATCTCCAGTCCGGTGACGACCC 25339 30 76.7 31 ...AG....A......T....G...C..T. CAGCTCGAGCCATCGCCCGTCCCTGCACGGC 25400 30 83.3 31 ...AG....................G..TG CGGCACCACCACCCACACGCCCCACCGTCGT 25461 29 86.7 0 ......................-.A..GA. | ========== ====== ====== ====== ============================== ================================ ================== 10 30 92.3 31 CTGCTCCCCGCGCACGCGGGGATGGACCCT # Left flank : GGCGACGGTGGCCAAGAAGATCGCTCGCCAGGAGGTGTTGCGAGAGGGGTCGTGCTCGTTCACGTTCCTGCTCACCGAGCAGGCGGTGCGGTGGGCGCTGCTGTCTCCTGAGGGGATGGTCGAGCAGGCGGCCCGTCTGGTGGAGGTGTCGCGGTTGGAGCGGGTGCGTCTGGGGGTGATCCCTCTGGGCACGGTGCTTCCTCAAGGGCCGATGAACACCTTCACCGTCTATGACGACAGGTTCGCCACGGTGGAGATCTTCACCGGCCGACTGGCGTTCCGTGATCCCCGGGATGTGGAGACCTATCGGGAGCTGTTCGCGATGTACGAGGAGCACGCGCTGTTCGGAGACCAGGCCCGTGAACGGATCCTTTCCTGGTTCGAGGTTTGAGACGGCGGGTGGTGGTCGGATGAGGGGGCGAGGGGTGTCGGGTTTGTCTGTTTTTCGACAACGTGCAGAAATGGCGGGTCTGCTGGGGTAGCGTCGCAGGTCAGGAAGA # Right flank : TCGCCGATCGGCTTCGTCTGTGATCGGTGACCGTGGCCGCGGGACCGGGGCGACCTGGTCGGTCCGGGCCGCTGAAACGGCCTCCCGCCACGGTCTCGATCACCGGCTTCGCAGTATCGAAGGAATCAGGTCCGGGCAGGAGACCTGGTCCAATGACCGGAGGAGAAGTACATGGCGGACGACGCACGTGCCATCACCCAGGAGCAGTGGCGGCACGCGGAACTGATCTGGGAATACCACCGCATGCACCACCAGGTGCGGACGTGTGACGTGGCGGTCGCCCTCGGCTGTAACGACATCGGTGTGGCGGAGTACGCGGCCGAACTCTACCGGGACGGACTCTTCACCGAGCTGGTGTTCACCGGTGGAAACAGCCCCTCGACCGCGGAGTTGTTCCCTCGAGGAGAGGCGGTGCACTTTCGAGAGCGGGCCCTGGAACTCGGAGTCCCCGATTCGGTGATCCTGATAGAGCCGGAAGCGTCCAACACCGGCCAGAACAT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 26528-27288 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000036.1 Nocardiopsis alba DSM 43377 contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26528 29 100.0 32 ............................. GCCGGACCCACGAAACGCGCAGCGTGGGCCCC 26589 29 100.0 32 ............................. GCCGGACCCACGAAACGCGCAGCGTGGGCCCC 26650 29 100.0 32 ............................. GCATCCGTGACCGCCGGATCTTCATTGGAGGC 26711 29 100.0 31 ............................. CCGCCCACAGCAGACCCGCACCCGGACAGAG 26771 29 100.0 32 ............................. TTGCGAGCCATGTCGCGGACCTTGCGGGTGTA 26832 29 100.0 32 ............................. GCGAGCAGGAATGGGAGGAGGCGTTCTGATGT 26893 29 96.6 32 ..........T.................. CCGTGGCTGCCCAGGATGTACCGGCCGGCCCG 26954 29 100.0 32 ............................. CAACTTCGAAAAAATGGGGAAATCATCTGGGA 27015 29 96.6 32 ..................A.......... ACCGCGCGCGAGACCGCGTCGGCCGCGGCGAT 27076 29 100.0 32 ............................. GCGGCCAGAGCCTGGAGGAGTTGGTCGCCTCC 27137 29 96.6 32 ..........T.................. CGCCGCCCCGACGTAGCCCTGATCTCATTCGG 27198 29 96.6 32 ............................G CCCCGGGTCATGGCGCTGCTGTGGGAGTGCGA 27259 29 89.7 0 ................T........T..G | G [27282] ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : CCCGGACAGTGTGCTCGTCATCTGCATGCCGTACATGGAAAGGCGCGCGTTCGCGACCACCCGGAAACTGTGGGACGAGGTCGAGGTGGTGTGCGCTTCCGCGCCGGTGAGCCTCGGTGACTACGTCAAGGGGCAGGGGGACGTCGGGGCGGTCATCGACATGATGGTCGGTGATCTTCAGCGGGTGATGGAGTATCCCAAGCTCGGGTTCGCCATCGAACAAGAGGTTCGCCGGGAGGTGCGTGAGGCTTACGAGTCCCTTGTCGCATCCGGGTACGACAGCCGCTTGATCCGAGGCTGACCGTGCTGCTTCCCGAGTATGGGGGAGCGGTTCCATCTCGTTAGGGACGGCCGTTGGAACCCCGCCTCTGCTTCTCTCAGGTCTAGTCTAGTGGGGGAGCGGTGTTCGGGTGGGTGCTTGAGGGGTGCCGGTTTTGTCTGTTTTTCGACAACGTGCAGAAATGGCGGGTCTGTTGGGGTAGCGTCGCAGGTCAGGAAGA # Right flank : GTGTGCCTCGATCGTTGCAGCCGTCACAGTAGTCATGAACCTTCTTGGCGCCCAATCTCGAACACTCGCATGAGCAGCTATTTTCTTCGCTCTGGAGCGTATCGGATTGATAATTTATGGATGACTACTGGTATACTCATATTGAAAGCCGCCTCTTGAGGTGGCTGGAAGGGACCTCGGGTAAGTTCCTTACGCTCCCCCGAGGCCCCGCCGGGGACCACTCCTTCTGGAGTGGTCCTCTACATTAAAGCCACCTGGAGAGTGCGTCCAAGAGTCGCGTCAAGGCTTCCACCAGGCGCAACACCTCCGAACGCTTCCAGGGCTCTTTCTCTGAGTGGGGCATCGCCATCTCCTCTCTGATCCCCGCCTCGCCTTGTCGAAGCAGGGAGGTCATGGAAATCTTCTATTGCGAGATGTGGAGACGGTGGTCCCGCTCTCTATGTATAGCACCCCGCGAGAGTGGGGTTTCTATGTACACTTTGCCTCATTCTTTTTGCAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 66272-65571 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAC01000010.1 Nocardiopsis alba DSM 43377 contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================ ================== 66271 29 100.0 32 ............................. TCAACTGGCATGCCCCCAGAAGGTAGAACCCT 66210 29 100.0 32 ............................. AACCGCCTGGAGGAGACGAACACGCGCCTCCG 66149 29 100.0 32 ............................. TGCGACCCAACGATGAGAAGGAGCCCTGCGTG 66088 29 100.0 32 ............................. TGAGTCAGAGCACGCGGGGCCGTACGGCGGGC 66027 29 100.0 32 ............................. GGTACGGGGTGACGCCCCGTACCGCCTAAGCG 65966 29 100.0 32 ............................. GCCATCCCCGCCAAGGGAAGCGAGGTGTTCTA 65905 29 96.6 32 .........G................... TCGGCGTAGAACTTCAGGTGCTCTGGATCGCG 65844 29 96.6 32 .........G................... GCGACTGGTGGCGCAACCGCGCGGCGGCTCTG 65783 29 96.6 32 .........G................... GCCTCCAGCGCACTGGTGAGCATGGCTCCGTC 65722 29 86.2 92 .........G..T........A..G.... TGCTGTACGAGATGAGCGGTTCCGGGCCCGGTTGTCCTCCGTGTGCGGGAGTGTCCGGTCTTCCGCCGTGAAGTCGTGTCTCCAGCGTCCTT C [65697] 65600 28 75.9 0 AC.G.....G..T........A..-.... | T,C [65573,65592] ========== ====== ====== ====== ============================= ============================================================================================ ================== 11 29 95.6 38 CTGCTCCCCACGCACGCGGGGGTGATCCC # Left flank : TCTCCGGACCGACCAGGGGCCGGACATCGAGTCGGGTAGGAACCTCGGGGTGATCTGGTGACGGTCATCATCCTCACGAACTGTCCGGCAGGACTGCGCGGCCATCTCACGAGATGGTTGTTGCAGATCGCCCCGAACGTGTTCATCGGCAAGCCCTCCGCGCGGGTCCGGGAGGTCTTGTGGGAGGAGGTCCGGCAGTACGCCGGCAATGGCAGGGCGCTGCTCGTGCATGCGACCGACAACGAGCAGGGGTTCGCCTTCGAGACCTTTGAACACAAGTGGAGGCCGGTGGATCACGAGGGAATGACCCTGATCCAGCGTCCCAAGGAGGGCGGGGGAGCTGCGACCGCCCCGGTTCCGGTGAAGAAGGGCTGGAGTAAGGCCTCGAAGAGGCGCCGGTTCGGCAGGTGAGGAGTGTGGGTGAATTGGTTCGTGTGTCTGAATTTCCACAACGTGCGGATTCGGGCCTATCCGGCTGATGAACGTGCAGGTCAACGAGG # Right flank : AGGTGACATGCGAGATCGCGTGAGACCTGAGTGCTGTTCTCCGTCCGCGCGGAGATGGGATGGGCCTGTCCTAGGGGCGCGTGCGGGGCTTTGGCACAATGACGGGGTTCGGGGTGTCCGGAGGTCGTCGCGCTCCTTGATCGTGCCTCCTCCGCGGTGAAGGGGTGGGTCGAGGCATGGTTCGGGGTCGCGGGCGCGTCGCGGTGGTGTTCGGGGCGGTCGTCCTGGCGCTCTCGGGTGTGGGGTGCGCCCCCGAACGGGCGGTGGAGCTTCCTCCCGAAGGCGGCTTCGACTACCAATTGGGCGGCGCCTATCCGCCGCCCGAAGGGGTCACCACGGTGGTGCGCGACAGCACCGCCGAGCCCGCCCCCGGCCTGTACTCGGTCTGTTACGTCAACGGCTTCCAGACCCAGCCGGACGAGCTCGACCGCTGGCTCGAGGAGGATCCCGACCTGGTGCTCAGGGGTGAGGACGGCGAGCCGGTGGTGGACCCGGGCTGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGCGGGGGTGATCCC # Alternate repeat : CTGCTCCCCGCGCACGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //