Array 1 5609-6698 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFC01000077.1 Bacillus thuringiensis strain INTA Fr7-4 NODE_12/9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 5609 32 100.0 35 ................................ TAATGACAGTATCTACAATGGTGGCATCCCGTGAA 5676 32 100.0 34 ................................ CTGTAGACGTTCCCGGTAAAGAAGCGGAAATGTC 5742 32 100.0 34 ................................ ATAGAGGACTTAGTAACGAATTTAAGAAGGTTGC 5808 32 100.0 34 ................................ ACTACCTTGTTTAACCGCTAAACCTTTTGGCGAT 5874 32 100.0 33 ................................ CTTAGAACCTATAAAAGAACAACCTTCTACCAA 5939 32 93.8 34 .........C...A.................. TCAGAACCTTTTTTAATAATGTAAATAAAGATCA 6005 32 93.8 34 .........C...A.................. ATTTGGTAGCGCATTGTTTATGGATGCACGATTT 6071 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 6139 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 6204 32 93.8 34 A..........A.................... CCCTGCTGATGCAACATCGCTACCTGCATTTTGT 6270 32 93.8 34 .........C..........A........... GAAAAAACGCTTGATGACTTAATGCGAGATGAAG 6336 32 93.8 34 ..A........A.................... GATGATACAGAAAAAATAGTACCAACAATCCGAC 6402 32 96.9 34 .........C...................... TCCAAGGGGGAACTGGGAGAAAGTAACTTAATGG 6468 32 96.9 34 .........C...................... GAATACGATTATCAAGATGAAAGCACAAAAAAAG 6534 32 93.8 33 .........C.........T............ ATGCCAATCGGTGTCCAAGCCGACTTCATTAAC 6599 32 96.9 34 ...........A.................... TACCTCGGGTTTATATTTATCTGGAACGCTCATA AA [6609] 6667 32 96.9 0 ..............G................. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 96.4 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AATCAAGATATCCTTAATAATATCTAGTTATATATTAAAAGTTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTTTGATTTAGTATTCAATATTCTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATAAACTTGATAGGTAGATAGAGAGACAATATATAGTGAATTTTATTGTAAATTACGACTCAATATATTAAGGGTATTATGAAGCTATACATTTTTGTTAATTAGTTAGTTAATAACTATGAAAATAAGGTCGAATATATTGATATAAAAGAATGAGTTGATTTAGAAAACCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATAAAATTCCTAATACATTCGCACCTAGAATTCTCATGCTTTATGATGGGAATTTATGATTTTTTATACAAATTAGTTTATTAAATAAAAACATTTTTATATTTTTGGATAAAACTAACGTATTTGTGGTTGATTTCGAACACAAATCGGT # Right flank : TAGTTTAGTAGATACTCAACTGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATGAAATGGAGGGAGATTGAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTATTATACCAATTATTCCATACAGAAAATATGATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATT # Questionable array : NO Score: 8.52 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15029-15719 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSFC01000077.1 Bacillus thuringiensis strain INTA Fr7-4 NODE_12/9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 15029 32 96.9 33 ...............................A AACACATTACTACCACGTATCCCCTATTCGTCA 15094 32 96.9 36 ...............................A AAAAAATAGGTAAAGCAATGGATGATTTCAACAAAA 15162 32 100.0 32 ................................ TTGATGTTGAGCCTTTCCATTGGAGCAACTAA 15226 32 100.0 33 ................................ CAACCCCAAAAGTAAGGGAAAAGATTAAAATCA 15291 32 100.0 34 ................................ TAGTTCCCTAGTAGGTCATGCAGCGGTCGTAGAT 15357 32 100.0 35 ................................ AATACAACAAGTGGAACGACCGTAGCGGAAATGGG 15424 32 100.0 34 ................................ TTTGCATTTATCACAAGTGTACTTAACACCAACT 15490 32 100.0 34 ................................ CTGGTACAACTTCGCAAAACGCACCACTGGAAGG 15556 32 96.9 34 .................A.............. ATGAGAGTATAGCAAGTGTTTACCTGGCGCAATC 15622 32 96.9 33 .................A.............. CCGTTAACGAAAATATAAAAAGCATACGTGCCG 15687 32 68.8 0 ....T.T..C.......AA..A..T.A.G.C. | A [15710] ========== ====== ====== ====== ================================ ==================================== ================== 11 32 96.0 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGTACAGCTAACAGTATTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGCCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGACGCAGCTCAATTTGCTACTTTAAAAATGGAATTAATTAAAATTATTGATGAGGATGAGGATAGTCTCAGATTTTATCAGTTAGGTAATAACTATAAAAATAAGGTTGAACATATCGGTATAAAGGAATCAGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTAGTGCATTCGCACCTGAATTTTCATGATTTATGAGCGAATTTTAATATTTTTTATACAAATTTTCTTATTAAATAAAGAAATATGTATATTTTTGAATAGAATTAATGTATTTTTGTATGATTTTAAACAAAAATCGCT # Right flank : TGGTAAGATGCTTGATAATAAGTTAGTGTCTCTGCTGGAATAAGAGGACCTGTTTCAATTCATACGGCAACAAGTATTGATCCGATTGATATTACTAGTATGCAGATTACGAAAATTGTAAATTCTGAGCTGGGGAAGGATAAAGGATCAGATACAATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATCAACACACAGTTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGTGAAGATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGCAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTGACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACCTTATATAGGAGCGTGGATTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //