Array 1 1352288-1357227 **** Predicted by CRISPRDetect 2.4 *** >NC_014664.1 Rhodomicrobium vannielii ATCC 17100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1352288 32 100.0 34 ................................ GCCGTGTTCGGCGTCGGATATAGGCGCAGCGCTC 1352354 32 100.0 33 ................................ TGGGTGCCGTCGATGTCATGTGGGAGGTGAAAA 1352419 32 100.0 34 ................................ TGCATCAACCTTTACAAGCTTTCGCAGCGTGCTC 1352485 32 100.0 35 ................................ GACGCCAAGCTCATGCAAGTGCAGGACACGGCCTG 1352552 32 100.0 35 ................................ GCCTGAATGCGGAGCACCTTGCGGCTCTGCTTGTG 1352619 32 100.0 34 ................................ GTCAAACGTCGCCCATGTCGTCGGATCGCTCACA 1352685 32 100.0 34 ................................ ATTTCAAAGCCGTCATCCTCGCTCGTGTAAAACT 1352751 32 100.0 35 ................................ AACATTCAGGGTATGATCGAGCTCTAACTTGTCGC 1352818 32 100.0 34 ................................ AGGCCAGAGCGCTTGGCCTCTGTCATCGATGGCG 1352884 32 100.0 33 ................................ GATGGGGATTAGTACCAAATCGGTGTCACATCG 1352949 32 100.0 35 ................................ GCGCGACAGACAGGAAAAGACCTGTCAACAATGTC 1353016 32 100.0 35 ................................ GCAGCCGGATACCCCGTCGCGGCGCTACTGGCGGT 1353083 32 100.0 33 ................................ AGTTTAAAAAGAGTGCTTGATACTGTTTGCGAA 1353148 32 100.0 35 ................................ GCCTCGAATGTCGCGCCATCACGCGTGAATGAGAA 1353215 32 100.0 34 ................................ TGATACCGCCGCTCATGCCGCCAGCCTCATGACG 1353281 32 100.0 35 ................................ ATCAAACACAAGGCCCCGAACCGCGCCGCTTTCCA 1353348 32 100.0 33 ................................ AATGCTCCGCAGTCGTGTAAAGCTGACGATACA 1353413 32 100.0 35 ................................ CGTGAAACATGGCGCGCGGTTGAGCAAGCGCTATC 1353480 32 100.0 33 ................................ ACGCATGAACCAGTCGGCCACAAGACGATCGCG 1353545 32 100.0 34 ................................ AAGCTGCTGGTGGGCGGAAAGACCGGCGCCTTCG 1353611 32 100.0 34 ................................ GCTAACTCCAGGACCCGTAGCGGCCAAATAAAAC 1353677 32 100.0 36 ................................ CCGCTCCAAAGCTACCATCTCAGCCGCCCGTTTCAT 1353745 32 100.0 37 ................................ ATGGCAGGCGTCACGACGCGCATGCGCGAAGGCTCAG 1353814 32 100.0 34 ................................ CTACCCCTTTCCTCGTAAAACGCGTACCCGTGAT 1353880 32 100.0 35 ................................ TGGTCGACCGGGATAACGTGCGTTGGGGGCTGGAC 1353947 32 100.0 35 ................................ GCCGTTGTAGTTGCTGTCCAGCACTTCCCCCAGGT 1354014 32 100.0 35 ................................ ACGCTTGGCCTCCTGATCCTCTGCCGCGACGGCTC 1354081 32 100.0 34 ................................ GCTTTGGGCCTGCTCTCCGTCTATGAGCACTATA 1354147 32 100.0 34 ................................ GGCGACATCGGGCAACTCGACCGTCTGCCCGGCG 1354213 32 96.9 35 ..........................T..... ATCGCGCGTAACAGTCACACGGTCAGGGTGTCGCG 1354280 32 100.0 35 ................................ CCCTTGGATCGCGATTTTCTCATGTGGCGGATAAT 1354347 32 100.0 34 ................................ TCTTTGGAAATGACGCAATCCGCCCTCGCCGCCA 1354413 32 100.0 34 ................................ TCTTTGGAAATGACGCAATCCGCCCTCGCCGCCA 1354479 32 100.0 35 ................................ GCTATCGCCGCATAGTAGGCCGCGATTTTGTCCGC 1354546 32 100.0 35 ................................ ATCAGTTTGCCCTCCGCTTGGCTTCTTCTTCTCGC 1354613 32 100.0 34 ................................ CACGGCATGCGCGGGAAATCACGCTGCACCTGTG 1354679 32 100.0 34 ................................ ACGCCAAGCTGATCGAACGGATAGGCCTCGCCAC 1354745 32 100.0 34 ................................ GACGCGAGCATAACACGCGCCGCCTTGGCGCGGG 1354811 32 100.0 34 ................................ CTCGCGATGGCCGCGATTAAACAGGCGTTGCAAT 1354877 32 100.0 34 ................................ GGCGGTTTGCGCGGCATCGCCTGTATAGGCCAGA 1354943 32 100.0 34 ................................ GCACTGTTTACGAGTGTGCTATAGATCCGACACT 1355009 32 100.0 34 ................................ ACGTTGAAGGTCTTGTCTGCGTCTTCGCCGTCGT 1355075 32 100.0 33 ................................ GCAGTCGTGGCGATGTACATGGGCACCACCACA 1355140 32 100.0 35 ................................ TCCGACAAGGCGCGCGCCGTCATCGTTGTGCGCTC 1355207 32 100.0 34 ................................ GGCAGATCGTCAAGATTTAAGTCTTCGCTCATTG 1355273 32 100.0 34 ................................ TTTTCCCCGAGCGGAAACTTGCATTGGCCGTGGA 1355339 32 100.0 36 ................................ GCGCGTCATGAGGCGCGGCGCGTTATCGCCGCCACC 1355407 32 100.0 36 ................................ GTCGCCTGTACGCTCGTGAGCAACTTCTGAGCCGCA 1355475 32 100.0 36 ................................ ACCAGAAGAACCGCGCCGGACGCCGCGCCGTCGCGC 1355543 32 100.0 36 ................................ TAACCGTTAAATCCGCGAGAAAACCCGGCGGCCGCG 1355611 32 100.0 35 ................................ TACCGAGGATACGGTTTAGCTCTTGATGAGGCATG 1355678 32 100.0 33 ................................ TTTTATGGAGGGAGACCGATGGCTTTGAGCCCG 1355743 32 100.0 33 ................................ CACGCAAGTGTGCGGCTACCGGTGGCGTCCTGT 1355808 32 100.0 34 ................................ CACTTCAGCGGCTGCAAGAGGATGTGCTCAGGCG 1355874 32 100.0 33 ................................ AACAGCCTGTCGCCATAGAGGTTGAGCAGCCGC 1355939 32 100.0 34 ................................ CTCTGCGAGTACAAGGGCAATAGAGCGGCGGCGG 1356005 32 100.0 35 ................................ ATCAGGGCGATTGCGTCACTCAGCGCGTTGTGCGG 1356072 32 100.0 33 ................................ TGTCAACATCACGCAGGCCCCGGCAGTTGCCGG 1356137 32 100.0 35 ................................ TTGACCTGCGGATTGAAGATGGACCGAGCCACGAC 1356204 32 100.0 34 ................................ TGCATTCAGCGCGGCAAGCTCCTGAGGCGACAAG 1356270 32 100.0 34 ................................ GCAGGCGTATACGTCACCTGTGCAGGCGCGGCGG 1356336 32 100.0 35 ................................ GCCCTTGGCCATCTCACTGGCGACCGACGTCACGA 1356403 32 100.0 34 ................................ CGGTCACACGGTACAAAGGGCTGGCGCAAGGGTT 1356469 32 100.0 35 ................................ GGCAGTTCAGCCGCGACCGTCCGCTGGAAGGCGGC 1356536 32 100.0 34 ................................ CGATCATCCTTGACATCATCGCCAAATCTCTTGG 1356602 32 100.0 33 ................................ TTTCTTGTGTCGGCTCAATTGCCGTTAGATAGC 1356667 32 100.0 33 ................................ AACTACAGCGTGGCAATGAGCGTGACTGAATAT 1356732 32 100.0 35 ................................ TGTACTTGAGCACAGGTTTTGTGGCGAAACCGCCA 1356799 32 100.0 34 ................................ ACCAGACGACGCGACAACATACGCGCGCGTGCTT 1356865 32 100.0 34 ................................ GCAGCACTCATGCGAGCCAGCTTGAACCGCTGCG 1356931 32 96.9 34 ..........T..................... ACCAGACGACGCGACAACATACGCGCGCGTGCTT 1356997 32 100.0 34 ................................ GCAGCACTCATGCGAGCCAGCTTGAACCGCTGCG 1357063 32 96.9 34 ..........T..................... GTGATGATGAAACCCCTTGGTGCGCGACGTTCGT 1357129 32 100.0 35 ................................ CCGTTTTAGCGATGTTGATTGACGGCGCTTTAGCT 1357196 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ===================================== ================== 75 32 99.8 34 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : CCTACGACGTCAACACGATCGAAGGCGACGGCAAGGCGCGCCTCAGATCGGTGGCCAAGGCTTGCCGCGATTTCGGCCAGCGCGTGCAGTTCTCCGTCTTCGAGATCGAGGTCGATCCCGCACAGTGGACGCGCCTGAAGGCGCGGCTTGAAGCCATCATCGACCCCAAGCACGACAGCCTGCGCTATTATCATCTCGGGGCGAACTGGCGGCACAAGGTGGAGCATGTCGGCGCCAAGCCGGCCGCCGACCTTGGCGGTACGCTCATCGTTTGATGAGATATCAGCTGCGCTGGCTCAAACCGTCGGTCAGCGCCTCTAACGGCGCGAACCTCAAGCGTGCCATCATTTACCGGCACGTTCGCGCAAGATCAGCTCTTTGAAATCGTGAGTAATCCCTTTCTGGTGAGGGGAAGCATGCGCCCAATCTTGCTCCGTGACCGGAGGTTCGCGCTTATCGTCGGCTTTCGAAAGTCGTGCCAATGCGTTAATTAGATGACA # Right flank : CGGCCGTGACGCATCCAACCTCGCGCAAGCCCGCGTCGCTTTTGGCGCGCTATTCTGTCTGGTAATAAGCCCCTTGAAGTCGATGGTGACCCTCCAGCCTGCGAATGGTGAGCGCCGTTTTCGAAATATTCATAGGTTTGCTTCATTCGGCTTGGAATTATTATAAATTTAACTTCTGTAACGCAAATGCAATCCATCGGATTGCTTTCCCTCATGCCCAATAAGCTACGAATATCCTTGTGAGGTAACTTCGACCTGATCTACCTTGGGCCTTGCGAGAATTCGGAAGATCACGGAGATCGAATGCCGGTGCTCAGGGTAACAAATGTCACAGCGGGTTATGGCCGGCTCGTCGTCCTGCATGCGTTGTCAGCGAACTTTGGGCGTGGCCGGGTGACGGCGTTGGTCGGGCCAAACGGCTGCGGCAAGTCCACGCTTCTGAAGGCCATCATGGGGTTCCTGCCTGCAAGCGGTGGCGAGATCCTGATCGAGGGTCAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1636014-1636645 **** Predicted by CRISPRDetect 2.4 *** >NC_014664.1 Rhodomicrobium vannielii ATCC 17100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1636014 32 96.9 35 ...A............................ CCTCTCTCATATACTTGATAGCCAGTTGAACGCGG 1636081 32 100.0 35 ................................ GTGTACACCCTCGCCATCTTCGGATCATCCCAGCC 1636148 32 100.0 35 ................................ ACTAGACCAGAATAAAAGAAAGCCTCTGTTGCAAT 1636215 32 100.0 34 ................................ ATCTATACGTCGACGGACGGGGGCGCGACGTGGG 1636281 32 100.0 33 ................................ CTCGGCAAGCTCATCTCGGCCGATACGGTCGAG 1636346 32 100.0 33 ................................ CCCTTAATAGATCGGATGCAGCAACTTTTTTTA 1636411 32 96.9 35 .............G.................. CCTTTCGTTGCACCCATTATCTCTAATAATTCGGC 1636478 32 100.0 35 ................................ TGGTAGGATGGAGCCTCCGGCCAGAGGCGCAGCGC 1636545 32 100.0 37 ................................ GAGAAAGAGATTTGGCGCTTCATGTGACTTGCTCCCC 1636614 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.4 35 GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Left flank : GTGTGTTCAGCACCTACCCAAAACATAGGCTCCGATCCGCGCACTCGTCAAGCGGGCAGAAGCTGCTTTTCTTCGGCTTCATCTTCTTCGTCGCTGGTGGCTTTGATCGGCTTTTCCATCAGTCACGAACCTCAAGTTCGCCCCGCTCCCGGATGGTCGCCATCACGGACGACTGGGTTGCCGCGTCGATGCCGCGCGCTTCCATGGCGTTCCTCAGAAGCGGCGCGTCGCAGCCATGATCGCGCATCCAGTGGGCGATGATCTCGGCCCGGTCCTTGCGGTCGCGGCAGAGCTCGGTTGCCAGCCGCAGTTCGGGCGCCACCACCGCGACACGCTTGTCGCCAACGGCGATTTCGGAAAAATGCGTCCAGGGGCCGCTGCCGAAGGCCTCAATGAAGGTGGACTGCGACGGAGTCTCGACGGTGCTGGCATCGACCTGGACGCCGTCCACCTCGAACGCCGCGTAATATTGCACGCAACAGGGCATCCACGTCGGCGGG # Right flank : CGCCGCACTCACGCTTGGCGGGTTGCCTATCGGGCAGTCGCCCGCCGCTTCTGTCTTGGCAACGGTCGTGATCGTGCGGCCTTGACGCTCGCGAGCAACAACCACGACTTGGCGCTTGCCGGTCTGGTTCTCAGCAAGGCGACGGTCCTTCCGATCTTCCTTGCGGTTCTCTGGGCGAACGTGACCGCCAAAATAGGCTCCATCAAGCTCAACATCGCCCTGCAAAGCGCCTTCATCGCGAGCCGCCTTTATTGATTCACGCAGCTTGTGGAGGAGAACGAAGCAGGTCTTGTAGTCGCAACCAAGATCGCGGGAAAGCTGAAGCGCGGAATAGCCCTTCGCGCCATTGGTGAAAATCGCGATGGCTCCGAGAATGTCACGAATGCGAAGCTTGCGGCTGTGGAAGATCGTACCGGAGGTGAGGCTGAATTGCTTGGAGCACGCCTTGCACTTCCAAACCGGACGGCTCTTGAGGTCGTAATGGTTTGTTCCGCCGCACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2048647-2049437 **** Predicted by CRISPRDetect 2.4 *** >NC_014664.1 Rhodomicrobium vannielii ATCC 17100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 2048647 36 100.0 33 .................................... TTGCCTGCGGCGTCGGTTTGACACTTCTTGCTA 2048716 36 100.0 32 .................................... GTTTTTCACGGCTTTCGTGCGCCGTGTTTCAT 2048784 36 100.0 34 .................................... CAGAACAACAGGATGGGATTGAAAAATATCTGAC 2048854 36 100.0 33 .................................... ATTAATTGAAGTGCTATCATCACGTACATGAGA 2048923 36 100.0 32 .................................... CGGATTTGGTCACCGGTGGAGCCGGTTGCAAA 2048991 36 100.0 33 .................................... CGATGACATCGTCGGACTTCATCACCCCTCCGC 2049060 36 100.0 32 .................................... TACGAATACGAACGGGCTTGCCAATGTTGGAA 2049128 36 100.0 32 .................................... GAGAATTCGTCCACCGTCTTGGCTTCACGCAG 2049196 36 100.0 33 .................................... AGGCGGGGCCTCGTCAACACCGCCGCGATGACC 2049265 36 100.0 32 .................................... GGACAGAGTCTGCTTTGGTCTTTTCCCGCGAA 2049333 36 100.0 32 .................................... CTTTCAGTTCACGCATGGCGTTGCCTCCGGCT 2049401 36 88.9 0 ...........................AAA.....A | A [2049428] ========== ====== ====== ====== ==================================== ================================== ================== 12 36 99.1 33 CTCTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Left flank : CTCTGCTTCTTCTTCCAAGGAGAGGGGAGGCGGCCAATCGCTGGGCGGTGGCGCGGAGCCGAAAAGGCGCTGGAAAGAACCCCAAGACAGCATTGCTTTACCCGGTTACTGAACTTCAACTGGGCGCAGCATGCCGCAACTTGCCAGCCGAAAGCCACCTCTGCAAGCTTGCAAGCAAACAGCGGGAATTTTTGTGGTTCTTGGGCATCCACACTGTTGTGCAAATGCTCCATTAAATACAACCCGATGACCACCAAGGATGTGCTGGCCCGTTGATAACTGTGATCGAGGGGATACAGTGAAACCACTAAGCCAAAGAAGTCGACCGTGGCAACTGCTAGAAAAACGGCGCCGACCCGGCAACAGCTTGATTTTTAGTTCAATTCCCGCTATTGTGACGATGCAGTTCACGCTTCGTCCCGGGGCAAAATCGGATGCTTTTGGCGAGTCGTCAAAACTGCCGAAATCGCTCTTTGAAATCAGTGCGTTACAAGGTGTAC # Right flank : AACGCCCCAGACCATGGGGCGTTTTTTTGTGCGCGGAGAGGAATGCTCGGTGAGGAATGTGATCGCTACTGCGTTGGATCGAGAGGCAGTCCTTCGTCATCTGTAATCGCCGGGAGTGATAGCCGTAAGCCTTTGCGCCTGCGCGGTTCCTCCTTCCTGCCGGATTCGTTTTCCCCGAACCATTTATAGTTTTCGCCCGCGGGATTCGGATAGTGGTCACGGCGCGGGTAGTGTGTCGGGAGGCCATCACGGTAGCCCCGAGCGGCCTGCAGGAAAGCTTGCGCATTTGGCAGGCTCACAAAGGCGCTGCCCCACGCCGCTTCAGCCTTCGCAATGAACGCGCCCGCGACGGTGGGGCCGCCGGTGAGCGGCGCTTCGATGCCGGAATAGTCGGGCTGACCGAAAAAGGCGCGATAGTCTGCAGCCTTGGCTGCACCCGTTTTCAGGCTGACATGCGTGATCGAAATCCGCGCGCTGCCGAAGCCAAGCGGCTTGCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 2058649-2059300 **** Predicted by CRISPRDetect 2.4 *** >NC_014664.1 Rhodomicrobium vannielii ATCC 17100, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 2058649 36 100.0 33 .................................... TCGCCAAAACCCCGATTTTTTAGGAGCTTTTCT 2058718 36 100.0 32 .................................... GGATTAGAGCGAGGCCGAATGCACCTTCCACA 2058786 36 100.0 34 .................................... TCGCGACTCCGCATACCAGTAAGATAATCATCGC 2058856 36 100.0 32 .................................... TTCAACAGCATCGATATCGCGCCAAATAAAAT 2058924 36 100.0 32 .................................... GGCGAACCTCGTCAGGATTGGTAATCCAATTC 2058992 36 100.0 33 .................................... CTTCTCGATGACATACGTCAACATTAGCTTTGG 2059061 36 100.0 32 .................................... CCATTTTCCGCGACAGCATACGGCCTGATCGC 2059129 36 100.0 33 .................................... CTGCGCAAGAACTCCGATAATTTCATGATGCGT 2059198 36 100.0 31 .................................... CCGTTTTCACTGATTAACGAAACCCAGAATT 2059265 36 91.7 0 .............................A.A...A | ========== ====== ====== ====== ==================================== ================================== ================== 10 36 99.2 33 CTTTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Left flank : CTATATTTTCCCGGAGGCGATTGGTCTGAAAAATGGTGTGCTGGTTGCTGGCGGTCTCGATGAGAACGACATGATCGAAAGTGTCGGAGCTACCCACATGCATCCCCGTTAAAAAATGAACTATGCAAAAATACAGATACCCTGATGCAGCGACAATGCCTGCAAGCTTGCGAGCACGCAAGGAGGTTTTGCGGCGCAACTGGGACACCCACACTGTGGCAGCCGCGCCTCAATCAACACATCCAAAAGCCCTATGGGGATGTGCCCGCCTGTTGATAACTGTGGCTGCAAGGGAACAGTGAAACCACAAAGCCAAAGAAATCGAACGCGGCAAATGCTCGAAAAACGGCGCCGACCCGGCAACAGCTTGATTTTTAGTTCAATTTCGGCTATTGTGACAATGCAGTTCACGCTTCGTCCCGGAGTAAATTCGGATGCTTTTGGCGAGTCGTCAAAACTGCCGAAATCGCTCTTTGAAATCAGAGGATTACAAGGTAGCC # Right flank : AAGCGCCCCGTTTGAGGGCGCTTTTTCTCATTGCACGCAGACAGATTTTGACGATTCCGGAGATTTTCGATGCTTGTTTTACTCAGGGATTTTCTGACCTCGAACGACTTCACTGCCTTCCTCAATGTCATTCAGCTCGGCGGGGTGCTCGGTATCGGCGCCACGCTTTGGCAGATGGGCCGGGACCGTGAGCCGATTGCGATCTGGGTCCAGTCGGATGACGGGCGGACCAAGCTGATCGGCACGATCCCGCGCCGCGTGCTCACGCGCGCCGAAGTCACGGGGTGGATTTCCATGAAGGCGGGGCGGCCGCGGCTCGATTTCACGCGGTTCGAGCCCAACTACAGCTTCCCGGATGATAAGGTCGTCGTTCCGATGACCGCGGCCGATTTCGAGTTGCTCGAAAAGCCGCCGCACCGTCCGAAGCGAGCACCCTCGAAAGGGCGCTCATTCGTGCGCCTCACTCCCAGCGGTGGAAGTCGTCCCCGTCGAATTCCTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGGCCGCTTCGGCGGCTTGCCCGCGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //