Array 1 18604-19893 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAER01000003.1 Pediococcus damnosus strain VTT E-123212 Scaffold_3_PdamnE12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18604 36 100.0 30 .................................... ATGGTATCGCCCATGCTTGCGTTCACATAA 18670 36 100.0 30 .................................... CTGAGTATTTCAAAATATAATATTCCTATG 18736 36 100.0 30 .................................... TGCAGGAAACCTGTAATCGTGGTATATTAT 18802 36 100.0 30 .................................... GACGATAAGAAGCTGCAAACTAGTCAATGG 18868 36 100.0 30 .................................... ATTTGAAACGAGTTCATAGCCCGAAAGCAT 18934 36 100.0 30 .................................... CTCCATTTGCTTCTGCCACTGCATATCTGG 19000 36 100.0 30 .................................... GGAGTTATTCTTGGCTTAATTCTAAGGTTA 19066 36 100.0 30 .................................... ATGGTATCGCCCATGTTTGCGTTTACATAA 19132 36 100.0 30 .................................... ACGCAATCACAAGTTACGTTCATACCCTAA 19198 36 100.0 30 .................................... ATTAGATCGGCTATATCTACGAGGCTACAG 19264 36 100.0 30 .................................... CCGGCGTCAGTTCACCACACCAACCCTCAT 19330 36 100.0 30 .................................... GAAGCGGAGATGGATGCTCGGCTAGATAAA 19396 36 100.0 29 .................................... TATAGCATAACCAGTTAGCAGTTCGTCAC 19461 36 100.0 29 .................................... TATAGCATAACCAGTTAGCAGTTCGTCAC 19526 36 100.0 30 .................................... GGTATCAGGGTCAGTTGTGTGGTGCTGACT 19592 36 100.0 30 .................................... TGGTGGTAAATCTGTTATTCAAACTGTTCA 19658 36 100.0 30 .................................... GATTGGTGGTGCGGTAATGGCACAATACGA 19724 36 100.0 30 .................................... CATAACCTTTAGCTAGCAAGCGTGAAATGT 19790 36 100.0 30 .................................... CCGGCAACGGTTGCGGTTAGTGTTTCATAG 19856 36 86.1 0 .....................C.CT...G..T.... | GG [19876] ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.3 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : TAGTGATGGGGTGAGTGAAAAGTATAGTTCCGGGATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAATCCATAACTGACATGAACAGTCAGTTATATACCCTTGTTCAGCAATGCTTATTCATGATTGATCTACCCTTGGAAGTCACTTATGATTGGGATTTAAAGAAGTTGTTCAAGTACTGCAAAATTCATTTTAATGCCGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTAGAGTGTGGACTCAAGTCTGCGGTTGGATTAACTAATGTCGCTCATTATCTTAATCAGCAGCAAATAGCTGACTTATCCAAGCTCACAATTTCCACGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACTAATTGCGACTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAGTACATTAAAATCCGGTTATAAAAAATCG # Right flank : CTAGTGGTCATTTTTGGTCCTGTGCTATACTAGGAATTATAAATGTTCATTAGAACTGTCCAAAAGGAAGTGCTGACAATGGCTAAAATTGGTTATGCTCGCGTGAGTTCCAAGGAACAACATTTAGATCGGCAGCTAGCGGTTTTAAAGGGCGTTGATAAGCTATTCACAGATAAATTGAGTGGGGCCAACACCAATCGACCAGAACTGCAAAAAATGCTCGCCTATGTTCGCGAGGGTGATATTGTCCTGGTCACTGAATTAGATCGCTTAGGCCGAAACAACCAGGACTTAACTAAGATCATGAACACCATTCAAAATAAGGGGACCACCCTAGATGTGTTAAACTTGCCGTCCATGACAGGGATTGCGGATCCTAATTTACGCCAGCTCATGACGAATCTCATTATTGAACTGTATAAATATCAAGCTGAAAGCGAACGTAAGCGGATCATTGAACGGCAGCAACAAGGGATTGCCCTCGCTAAACAGCAGGGTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 855959-853346 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAER01000002.1 Pediococcus damnosus strain VTT E-123212 Scaffold_2_PdamnE12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 855958 36 100.0 30 .................................... AGGTATCGTTTGTAATCCTACGAGTGCAAT 855892 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 855826 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 855759 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 855692 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 855626 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 855560 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 855494 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 855428 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 855362 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 855296 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 855230 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 855164 36 100.0 30 .................................... CATTAACAATCGCAAACTCACCATTTCCTT 855098 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 855032 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCAGA 854966 36 100.0 30 .................................... ATCTTATCTGGCATTTCATCACACATACGT 854900 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 854834 36 100.0 30 .................................... ATATCTACCCCTAGTTTATCGTCTTCTCGG 854768 36 100.0 30 .................................... CGCTTGGGTTCACATACATCACAACGCGGT 854702 36 100.0 30 .................................... AATGTTTTTGTTTGAGAGACTGCTGCATAT 854636 36 100.0 30 .................................... TGTTAGGCCTTCCACAGTAAAGCTAATTTT 854570 36 100.0 30 .................................... ATTCGACTATCCCGGATTGATTGGAGATTC 854504 36 100.0 30 .................................... CTCGGTACGCAATAACCTTGCCGCCACGTC 854438 36 100.0 30 .................................... ACCCTTCGATTACTAACCCGCTTAATCTGA 854372 36 100.0 30 .................................... TATGATGATTGCGTGCAGTAGGTGGTATAC 854306 36 100.0 30 .................................... AAAACGTTGATTGATAACGGTGTAGCAGAT 854240 36 100.0 30 .................................... TGCCGACATTGCCGAGACCCCAACCAGCTT 854174 36 100.0 30 .................................... TTAGCTTATGCCAACATTGGTGGTAATGAT 854108 36 97.2 30 ..............................G..... TTCGCTTTCTGTTGAATAGTAATATGTGTT 854042 36 100.0 30 .................................... GCCATTGGTGTCTAATGACTGTGGTGCTGT 853976 36 100.0 30 .................................... CGTGTACATGATGTGGTCGTCCCCAATGTT 853910 36 100.0 31 .................................... CTAGATACAGGTAATCTGTGGGTATTGTGTG 853843 36 97.2 30 ................................A... TTCACCTACAATTAATGTATTACCCTTTAA 853777 36 100.0 30 .................................... TAATAACGGAGCGTTAAAGGCTTGGAGTTA 853711 36 100.0 30 .................................... CGGGGTCGCTTCCACATATCCTGTGGTCCA 853645 36 100.0 30 .................................... CCGTTGGTCCGACAACTTCCGCAGCTCTTT 853579 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 853513 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 853447 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 853381 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : TCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //