Array 1 182376-183503 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITJ01000001.1 Cronobacter sakazakii strain MOD1_1-15 csak1-15_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182376 29 100.0 32 ............................. CGCTGGCGCAGGCCCGCGCGCAGAACGCACAG 182437 29 100.0 32 ............................. GGTAAAACTATCTCTGCCCCGTACTGGCAACC 182498 29 100.0 32 ............................. CGGCGGTTGCTGATTATCAATCCAGCGTTATC 182559 29 100.0 32 ............................. GTTGATTATCCGGCCGCAGTATTCAACCGGGC 182620 29 100.0 32 ............................. CGGCCGAGCTGGGAGGAACGGCCCGCCTGTTT 182681 29 96.6 32 .T........................... TCCACGCAAACAGCCGGGGCCGGCGTCTGGTT 182742 29 96.6 32 .T........................... AGCAAACCACTCGGCAGCTACTCGGCGGGCAA 182803 29 96.6 32 .T........................... GCCTTCGAACGGCCCCTTGGCGCGCTACCGGC 182864 29 96.6 32 .T........................... TGGGTCGCAGTAGAGCAAGACGCCAGCGGGGA 182925 29 100.0 32 ............................. ACAATTCGCCGCGATGCAAACAGCACGGTAGA 182986 29 100.0 32 ............................. CCGCCGCAGCCGCCGCACAATCAGCTGCTGCC 183047 29 96.6 33 .T........................... CCGCAGAGAAGCGCAATGCGGAGATTGAGAGGC 183109 29 96.6 32 .T........................... TTTTTGTTTACCGGTACTTTCTAAACGGCAAG 183170 29 96.6 32 .T........................... CCAGATAACGTTAGAGATGGTGCGCTAATGCA 183231 29 93.1 31 .T..........................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 183291 29 100.0 32 ............................. AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 183352 29 96.6 32 ............T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 183413 29 96.6 32 ...................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 183474 29 82.8 0 .............C...A..A....T..T | C [183499] ========== ====== ====== ====== ============================= ================================= ================== 19 29 97.1 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCATCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209606-210000 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITJ01000001.1 Cronobacter sakazakii strain MOD1_1-15 csak1-15_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209606 29 100.0 32 ............................. TGCCCGCGCAACGTCTGGCGGGAAAAAACATT 209667 29 100.0 32 ............................. GTAATGTTGACCTGTTTTGGGAGAGTGGAGAG 209728 29 96.6 32 ............................T GAGGCGCAGCTGGTCAACGCTGTTGTCTCGTC 209789 29 96.6 32 ............................A CCCTCAAAGCGCCGTTTTAACTCTCTGGTGTC 209850 29 100.0 32 ............................. TTCATACGCCGCACCAAAACTACTACCAACAG 209911 29 100.0 32 ............................. TGCGCAGGGTTCAAATTGGGGGGGATAACTGA 209972 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAATGTCCCGCCCCGCCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCGCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGATGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGCCCCACAAAACTTTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 500189-499974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITJ01000001.1 Cronobacter sakazakii strain MOD1_1-15 csak1-15_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================ ================== 500188 34 97.1 28 ......................A........... CGGCCCACGGAACAGGCGTTAATGGGGA 500126 34 97.1 26 ..................C............... TGGCCCACGGAGCGGAAGTTGACTGA 500066 34 100.0 25 .................................. TGGCCACGGGACAGGCGTTGATGTC 500007 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================ ================== 4 34 98.5 27 ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Left flank : AGCTGATGCTCTACCCTGCCGTACAGGCGACGCGCGAGGCCGTTGAAGCGATTGCCGAAGCGGATTTAATCGTGATTGGCCCCGGCAGTTTTTATACCAGCCTGATGCCGCTGCTGCTGCTTGACGATCTCGCCAAAGCGCTGCGCCGCACGCCTGCGCCGATGGTTTACATCGGCAATTTAGGCCGCGAGTTAAGCCCGGCCGCTGCTGCGCTCAGGCTTGAAGAGAAGCTGGCGCTGATGGAAGCGCATATCGGTAAACGCGTGGTGGATGCCGTGGTCGTTGGCCCGAAGGTGGACGTGAGCGGCGCGCAGGACAGAATCGTGATTCAGGAGCCGCTGGAAGCGAGTGATATCCCTTACCGCCACGACCGCCATCTGTTGCGCGCAGCGCTGGAAAAGGCGATTCAGGCGCTGGGGTAAGCGCTATGGGTGCAATGGGGTTACGGCGGGTGCGCTTCGCTTACCCGCCCTACGGCTCCCGCAATGGGCTTTGATGAT # Right flank : CCACAACCCCCGTCACAACCAGAAGAACTTACGAGGCAGCGATAAACAGCTCGCGCAACTGATGAAGCTTATCGCGCAACTGCGCCGCCTCTTCAAACTCCAGGTTCTGCGCGTGTTGCACCATCTGCGCCTCAAGCTGATGAATTTTCTGCTGCAACGCTTTCGGCGTCAGCGCCAGTTCAGCGGCTTCGGCATCTGCCACGGTGCGCCCTTTTCCGCGTCCTTTCGGCTTGGTTTTCGCAATATTCTCGCCAAGCGCCAGAATATCGACCACTTTCTTATTAAGCCCCTGCGGCACAATGCCGTGCTCTTCGTTATAAGCCTGCTGTTTCTCACGACGGCGTTCGGTTTCGCCAATCGCCTTCGCCATCGACGGCGTGATTTTATCGCCGTAGAGAATCGCTTTGCCGTTCACGTTACGCGCCGCGCGGCCAATCGTCTGGATAAGCGAACGTTCGGAGCGCAGGAAGCCCTCTTTGTCGGCGTCGAGAATAGCCACC # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGGGTGGGTAAGCGAAGCGCACCCACCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //