Array 1 701388-702814 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134509.1 Helicobacter pullorum strain NCTC13154 chromosome 1, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 701388 36 100.0 30 .................................... TAAAGAACATTGAGGAGGGCTTCCAACTCT 701454 36 100.0 30 .................................... AAGAATATCAGTATTTGTTTTAGAATCCTT 701520 36 100.0 30 .................................... GAAAAAGAAATCGAGCGTTCTTCGCAAGAA 701586 36 100.0 30 .................................... ATACCAAGAATATCGCTATCATAAACCTTT 701652 36 100.0 30 .................................... CACAAGCGCTATCTTGGTCGTTTCCTTAAA 701718 36 100.0 30 .................................... CAAGACCTGATACAATAGGACGCTGACCCA 701784 36 100.0 30 .................................... TGTTGATGTTCAAAAACCTATTTCAAGAGA 701850 36 100.0 30 .................................... CACAAACGATATCTTGGTCGTTTCCTTAAA 701916 36 100.0 30 .................................... CACAAACGATATCTTGGTCGTTTCCTTAAA 701982 36 100.0 30 .................................... GACAGCGACGATAGTCCTGTTAATGCTGAC 702048 36 100.0 30 .................................... ATCATAGTTTTTTAATTATGCTTGAGAATG 702114 36 100.0 30 .................................... CGATGTTGTAAGTAATGTTTATGAGCGTGG 702180 36 100.0 30 .................................... TCCTGTTGGTGCTACGACTCCGGAAACTGC 702246 36 100.0 30 .................................... ACAATTGGACGCACAATTCATATCAATTCT 702312 36 100.0 30 .................................... CGCACATTTCAGAAACAATTAAGTCTCTTT 702378 36 100.0 30 .................................... ATTGTCTTGTTGGAAAAGTTCCCGTTTCTA 702444 36 100.0 30 .................................... CGTTATGAGGAATTTATTCAAAGAGAATTT 702510 36 100.0 30 .................................... CGGTATGAGGAATTTATTCAAAGAGAATTT 702576 36 100.0 30 .................................... GAGGTTCCAGCTGGTGAGCATAAAGCATTT 702642 36 100.0 30 .................................... TGAACTCTCAACTCCATCAGTATAGCGACG 702708 36 100.0 30 .................................... TTCTAGTGTTGAAAATATTGATGATGAAAC 702774 36 91.7 0 .........................CC....C.... | AG,AG,T [702797,702805,702808] ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.6 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATCATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGATCCAAAAAATCTCGTGCTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGCGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGCGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTACTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : CCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGTAGTTTTTGATTACTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGTGGTGAAAAATTAAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAATCAAGGATAACACACCGCAAGATTCAAACATATTTTTTAAGAATTGAAGGAAAAATCATGGTATATACTACTTTTTACCAAAGTCCTATTGGTACAATACTTTTAGCAAGCAAAGATAATAAGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGACGATGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTGTTTGCCACAAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1571764-1572593 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134509.1 Helicobacter pullorum strain NCTC13154 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1571764 36 100.0 37 .................................... CTTTACCACAATACTGACGTAAGAAGTCAGTATCATT 1571837 36 100.0 36 .................................... CATTGTTATACCACTCATCCATTACTTGACTTTTCC 1571909 36 100.0 35 .................................... AAATGTTAAACCTTTAATTTGAAATGCCATTGTAA 1571980 36 100.0 37 .................................... CTCCCTAAGGAATTCTGTGTTTTCTGTTTCTTTGTCA 1572053 36 100.0 39 .................................... TACAATGCGATAGTTTCTCCAACCTCAAAAAATCCATCG 1572128 36 100.0 38 .................................... TATTCCTTTTTTGGAATAACCACATATTCCTTTTTTCG 1572202 36 97.2 35 .....................T.............. TTTTTTTAATGCACTCATGAGTGCCTCCTTTGTTT 1572273 36 97.2 36 .....................T.............. ATGGCGATGTCTTTATTGACACCGCTTACTTTACCG 1572345 36 100.0 34 .................................... TTTGGAATCAGAAAATACCACGCTTAAAGCTAAA 1572415 36 100.0 36 .................................... ATTATTTTGTCTTGATATTTTAATTCTATGTATGCA 1572487 36 97.2 34 .A.................................. AAATTTGCTTCTCCAAAAGGAGGAACATACTATG 1572557 36 72.2 0 ............A...TAT.....AA..T....TTT | C [1572587] ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 97.0 36 ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Left flank : GTCTATGAGTGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAAAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGACCCATTTGCTCCCATAGATTTGAACTTCTAGCGTTCAAAAGAGATTTGCGAAGTTGTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : TTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCATTTTTGCACATTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGTAAAATGCATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAACATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTTCAAGAAATTATGGGAATCTACCTTCCACCCCAAACCAAAAGCAATCTCAACCTAGAAAATCTCGATAAATCTCTTTTG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //