Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUS01000001.1 Listeria monocytogenes strain FRR B 2975 FRRB2975_NODE_1_length_628365_cov_85.9657_ID_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 509856-512800 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAUS01000002.1 Listeria monocytogenes strain FRR B 2975 FRRB2975_NODE_2_length_518178_cov_113.788_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 509856 36 100.0 30 .................................... AAAGTTAGAATTATTTGTACAACTTGAACT 509922 36 100.0 30 .................................... TTATGCAGATTTAAGACGTGCAGATTTAAG 509988 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 510054 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 510120 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 510186 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 510252 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 510318 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 510384 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 510450 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 510516 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 510582 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 510648 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 510714 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 510780 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 510846 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 510912 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 510978 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 511045 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 511111 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 511177 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 511243 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 511309 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 511375 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 511441 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 511507 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 511573 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 511639 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 511705 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 511771 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 511837 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 511903 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 511969 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 512035 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 512101 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 512167 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 512233 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 512299 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 512365 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 512431 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 512497 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 512564 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 512630 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 512696 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 512762 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [512787,512793,512796] ========== ====== ====== ====== ==================================== =============================== ================== 45 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //