Array 1 369857-371589 **** Predicted by CRISPRDetect 2.4 *** >NZ_EQ973646.1 Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228 Scfld18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 369857 47 100.0 30 ............................................... CTATGCGGTGGATATTGACGGTGAGGTGTC 369934 47 100.0 29 ............................................... GAGTTGTCAAGCGTGCCGTATCTGGATCT 370010 47 100.0 29 ............................................... TAGAAGGATCCGACACAGATACTATAATC 370086 47 100.0 29 ............................................... AAGAAATTGCTAATATTAGCCCAAGCCCG 370162 47 100.0 30 ............................................... ATATTTGCAATACCCAGCAAAATCTCCAAG 370239 47 100.0 30 ............................................... GACTTGAACAAGAAACACAGAAAAAATCAA 370316 47 100.0 30 ............................................... CGCAAAGGATATTAGCTCTTCGACATCTTT 370393 47 100.0 30 ............................................... AAGCGGAGCAAACATTAATATGTTTGCGAA 370470 47 100.0 30 ............................................... ATAGTAAAAAAAAGTTAGTATCTTTGTAGT 370547 47 100.0 30 ............................................... TTCCCTAGTATATTATACAAGATCACTACA 370624 47 100.0 30 ............................................... AACATTCCTTTACTCTATTTTCTACGTTTT 370701 47 100.0 30 ............................................... AAGACAGAAAGGTATGAGCAGCTTTAAGGA 370778 47 100.0 29 ............................................... TTGAATAGCGCCTGTTTCTTTTCAAAATT 370854 47 100.0 29 ............................................... AAATGCAAATAATAACCAAAAACTCTCAG 370930 47 100.0 30 ............................................... TTCTTTACCTATAATAAAATCACATATAAA 371007 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 371083 47 100.0 29 ............................................... TGTATGCCTTGCGCACCAATTATCATTAC 371159 47 100.0 30 ............................................... TTAACTGGGGAGAGGTTGGTAATGTTTGTT 371236 47 100.0 30 ............................................... GCATGCATGAATGTTCCGTAAGCAGCCCTT 371313 47 100.0 30 ............................................... TACCGATTGCGTGAGATCCTTGCAGACAAA 371390 47 100.0 30 ............................................... AGTTAAATGGAAATTATCGTTTGATGGATA 371467 47 100.0 29 ............................................... GGATGCTTCAATCACCTCATGAGATTGAG 371543 47 85.1 0 .............................T..G.GT.....G..CG. | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.4 30 GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Left flank : CAGTTTTCTATTTATGTTCGCCATTGTGCCAGTTATGAAAATGCAGAAGTTCATATCAAACGTGTCAAGTCTTTCCTACCGGAATTTGGTCAAATAGGGATTTTATGCATAACAGATAAACAGTTTAGCCAGATAGAATTATTTTATGGGGAAGAAGCCTCAAATTAAGAATGTTGCTGGACAACAATTGGAGTTGTTTTAGAAATAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTAGAAATATTTCTTTTTTATTTCTAAAACGCTTTGCAACTTATTGGTTCTTATCTAGTTATTAGATATCA # Right flank : CACAATACCTTCGTCCGTTGAACTGGTCAATGCAAAAAAAACGACCGCACGATTGGCCCTCAACGACCGCACGATTGAGCTCCAACGACCGCATAATTTGCCTTGATCGACCGCACGATTCCGGAGGCCTGTCAGAATGAGTTTTCAGAGGCTGGAAATACCTTTGGGAGAGGTGAAATAAAGCCCGCGGGCTTTTTAAAAAACGTTTCGGGCTTTGAAGGAAAAGACTTCGGGCTTTTGAGTAAAACGTTTCGGCGTTTTTCTGTGCTTATGCTGAAGCTTTTCTGTTAAGAATCTTCTTGAGAATATTTTTTCTTGCAATGGCAAGTCCGGAGGACAACGGCTCATTGTCCAACAGGCTCAGAATGTTTTCAAGTTCTGACAATAAGTCAGTATGAAACTTGCACTGTTCGTATGAAAGCTTTATGCATAAGGCTCTGACTCCACATGAGTTTTCACAGGACGTAATTCCGGACAGGCAGTAATCGATGAAGTCGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GCTGTAAGTTCTTATGCAAAGTTACTAAAATGAAAGCAAATCACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 600676-601239 **** Predicted by CRISPRDetect 2.4 *** >NZ_EQ973643.1 Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228 Scfld15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 600676 33 97.0 33 ................................A ATACACGTGCGCCGAAAAAGACACGTAAGACAA 600742 33 100.0 32 ................................. TGTTTCATAAGTTAGCAAGTGTCTAGCTGTAT 600807 33 100.0 33 ................................. CCGCCCAGCGACGGGTTGGCCCATCGCAGCAGG 600873 33 100.0 34 ................................. GATATTGGTGCTGTAAACTTTACGAGAGATAACC 600940 33 100.0 33 ................................. ACCGCTGAGTTTTTCTTGTAAGGAACATTGCCT 601006 33 97.0 33 ................................A ACATCAAAAAGCGCATAGCAAAGAAAGCTCTGG 601072 33 97.0 34 ................................C GGATGTTGTCAATATTGGAATAGCTGCATCCCAG 601139 33 97.0 35 ................................G ATTAACAGGGCAGAAGTCCTGGGCGGCAACGTCTG 601207 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 9 33 98.3 34 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGAAGGAAAACCAATTTGTATT # Right flank : CTAACTTTGTATTGCAAGGTGAACTACCGCTAAACTAAAGATTTAGCGGCTTCGGAGATACCAATACCTCCTCTCTTTTCCTGCTTCTTCCTGCCATTGCTTTTTAGGACACGAGGTCGGTCATCCACAAGAGGACAGTCCACAGGCTTGACTTTCCCACGCTCCGTGGGTAGGGCTTTCAAGCCAAATTCCTTGATGTTGCAAGCGGCATTGAAGTCCCGGTCGTGATGTGTACCACATTCCGGGCATGTCCAACTGCGCTCGCTAAGATTCAATCCTTTGTACACATGGCCGCATTTGCCGCAGGTCTTCGAACTTGGGGCAAAGCGGTCTATCTTAATGAGGTTCACACCATACCAACTGCACTTGTATTCAAGCAAAGTTAGGAACATACCGAAAGAAGCATCTCCTACGGCTTGTGCCAAATGGTGGTTACGCTGCATCCCTTTCACGTTCAAATCTTCCATGCAGATAGTGCGCACTTGGCTGTCGTGCGTGAG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 603035-604057 **** Predicted by CRISPRDetect 2.4 *** >NZ_EQ973643.1 Phocaeicola coprophilus DSM 18228 = JCM 13818 strain DSM 18228 Scfld15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 603035 33 97.0 32 ................................T CAACTGGATTGACAAAAGGAACCGGAAGTTTC 603100 33 97.0 33 ................................T GCAAAAAGTAGAGGCATTGGCTGATTTCTTTGA 603166 33 100.0 33 ................................. TGTCATGGGGCGATATGGATGAAAATGGGAAAC 603232 33 100.0 33 ................................. GGAAGCCGGAGTCAATCCGGAAGTGATCATCAA 603298 33 100.0 33 ................................. AGACTTATCCCAAATTGAGGATCGGTAAATACA 603364 33 100.0 33 ................................. GTGTAGCCAGCGTGACAAACAACAACACGCAGA 603430 33 100.0 33 ................................. TAATTCTATGGCATAACTGTACCCGCATGGGTG 603496 33 97.0 32 ................................G TTGAAAAGTACAAGTACCAGTATATTGACAAG 603561 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 603627 33 100.0 33 ................................. TATAGATTTGGTCAGGATAATCCGGTTAATATA 603693 33 100.0 33 ................................. CTAAAACCTACTATATCGGCGAAGCTAAAAAGC 603759 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 603826 33 97.0 34 ................................G CCATCTTGTCCTTCACCTGCGTGTCGATGTCGGT 603893 33 97.0 32 ................................T TTACTCTTTTGATTATTTTTTGTTACATTTGC 603958 33 97.0 34 ................................T TTTGTATATAGGTTTTTCACGAAGGATATCCAGC 604025 33 90.9 0 .....................C..G..A..... | ========== ====== ====== ====== ================================= ================================== ================== 16 33 98.1 33 GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Left flank : AAAATGAGACCATGATACAGAAAGATTACATTTCAAAGAACCACTCGAAGTTTCTCATCAAATATCACGTGATATTTGTATGCAAATACAGGAAGAAGCTACTCATTGGAGCAGTGGAATATGACATGAAGCAAATCATGCAGAACATATCAGACCTGTCAGACTTTAACATTGAGGTCATGGAAACCGACAAAGACCATATTCACATGATGATATGCAGCGAACCAAAACTCTCTCCGCTGCAAATCGTAAGGAGGCTAAAACAAATGTCAACAACTGCCATTTGGAAAAGACATGAAAATTACCTTAGACATGTATTTTACTGGGAAAACACATTTTGGACGGATGGATATTTTGTGTTATCAGTCGGAAATGTCAGTCAGGAAACCATCAAAAAATACATCGAAAAACAAGGGTAGCTGCGCTACCCCACATTTTTCATCCCCTAAACTGAAGATTTAGGGGTTTTCAAATGCGAGTTCCTATAAAACAGATGTTTA # Right flank : AATTTAATGGTACTCATATTTACTGATAGTCTGCTTCCACCGGTATTATCTCTTGAATCAGGCACGACAGATCCATCATTCCGGCTTCCTCCGGCACTTCCTCCGTTATCAGATCCTCGCTGCTCTTGAACAGGTTCAACGCTTCCTGCATCTGGTCTGTCTGCATTATCCACCTTGTCAGCTTTTTCTTCTGCTGTGGATCGTTCAGCTTGTTCTGGTCCGGATACGGTAGTATTACCGGTGCTTCCCATGTCATTGTCAGATCCGACTTTTTTGTCTGATCGTACGGATTTTCCCCGTTCTCCAGACTTAGGTCTATTGCTGACATTATTGTTTGCTCCACTTCCTTCTGTGTCAGTGGTCCGGGCTCCTCCTTTTGCACCGTTAAAGAGATTCCCCATTTGCTGTAATGAACGTATATCATCTTGAACTCGGCTATATAATTCTTCAAAGCTGTTTACCTGTTTCGCTCTGGCTTTGCTCTTAACCAGTGGAGCTAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //