Array 1 153958-153321 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000001.1 Leptospira kirschneri strain ZV013 ZV013_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 153957 37 100.0 34 ..................................... CATGTCGTGCCGTTGTCTGTGGGAAAGGTGAAAG 153886 37 100.0 35 ..................................... AGTCCAGTAACACACTGGTCTTGAATCACGCGAAA 153814 37 100.0 34 ..................................... TTTTCTACTCCTTGCGGGTGTGGGGTTTCTTTGG 153743 37 100.0 36 ..................................... AGGTTGTGATGACGGTAAAGTTTATGAATGCGAAAA 153670 37 100.0 34 ..................................... GAATCTTGAATTGTTTGTGTGATCGCGGATTGTA 153599 37 97.3 35 .......A............................. CCTTCTGTTCGCTACGTGATCGAGATAGAAAAGTC 153527 37 100.0 134 ..................................... TATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGTAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 153356 36 70.3 0 C......T..C.A.CG....-.A....A.G......T | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 8 37 95.9 49 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TCGATAAGCATATATTCTGAAATACAATCCATTTAGAACAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTAGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTATTTCTCCCGATCCTTTGCGACCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TAACACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACTCAGAAATTCCCAAAAATCAAGTCGGTCTGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTATT # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-1.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 1 22342-22012 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000014.1 Leptospira kirschneri strain ZV013 ZV013_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 22341 38 100.0 34 ...................................... TTGCACCTTTTGCGTCTATTGGAGTCGCAATATC 22269 38 97.4 33 .....................................G TACAAAGTTATTACTGGGACTAATAGGGATTCT 22198 38 100.0 33 ...................................... GATCTTTACTTCGTTTCCGATCTTTACTTCGTC 22127 38 100.0 34 ...................................... GTTGGGAACACTGTAAATTGTGCGAGTCCGAATT 22055 38 94.7 0 ..........................A........G.. | AAAC,AA [22020,22027] ========== ====== ====== ====== ====================================== ================================== ================== 5 38 98.4 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Left flank : GATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATGTGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : AATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTTTGAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCACGGTCCTGCAAAGCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 76098-75632 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000002.1 Leptospira kirschneri strain ZV013 ZV013_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 76097 37 100.0 34 ..................................... ATAGAATAGCGTCTAAGAAAGAAAAAGAAAGAAT 76026 37 100.0 34 ..................................... TTCATCCAACGCTTTCAAGATTCCGAATATTAGA 75955 37 100.0 35 ..................................... CCTGAAAGACCCCAATAATTTTGTCAGCGTATCTT 75883 37 100.0 34 ..................................... ATCGTACGGCCTATCAATGATGATTGCTTTCGGT 75812 37 100.0 34 ..................................... ACATCGCTCTCAGGCATCAAAAAGGCTGCTGCAA 75741 37 97.3 37 ................G.................... CATCGTAACCCCGTTACCGGAGGTTCTTCTTAGAATT 75667 36 81.1 0 ................G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.9 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAAGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATTCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATTCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTATAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTATTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 140883-141107 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000002.1 Leptospira kirschneri strain ZV013 ZV013_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 140883 24 100.0 49 ........................ AGTGGATTGAAACTTTAAAAAAATGCTTCTCGCTACCGCTCGGGATTTA 140956 24 100.0 48 ........................ AGTGGATTGAAACGCATTGTAATCGTGCCATCTCCCTGCTCACCCTGT 141028 24 100.0 33 ........................ CTATTTTATGTGGGATCGATTCCTAAGACATGC 141085 23 75.0 0 ........T...A...G.-C.T.. | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 93.8 44 GTTTCTTCCTTTGTTTAAGAAGGA # Left flank : TATTCAGAACCATACAATCAATTTCCCAGCATTTTATTTTTAAACAGGGTTTTGCAGTAAAACTTACAGCTCTCCATTTTTTAGAACTAAAGCAAAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTATTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAGCCACCGCTTAGCGGTGGAACAGTTTTGCTTAACATTTATACAGTATGGCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAACTAATAAATCTTTTCCTAATACATCAATTAGAGCCTTTGCAGCCGCT # Right flank : AGTTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGGTTGTATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTACAATATACTTGATTAGAATTTTTAGAAATTTTTATTTTACCGCTCTATACTCAAAACATACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAAGCTGGATAACGAAAGTGCCTCACTTCTATTGGCGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAAAAGAATTTAAAATAAACGAACATGAAATTTTTTATCAGT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 93301-92834 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000004.1 Leptospira kirschneri strain ZV013 ZV013_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 93300 37 97.3 35 ...................T................. AATCGCAATCTTTTGAATATCTGAAAAAACAGCTA 93228 37 100.0 35 ..................................... TGTTACAATCCATGAATACTGTCTTACCCTTTGAT 93156 37 100.0 35 ..................................... ATTTAACCTGGGCCCCTTCTTACACTGGTGGAAAT 93084 37 100.0 34 ..................................... AAAATTATTTCTGTCATTAAGATTATAATAAACC 93013 37 100.0 35 ..................................... CCACTGCAATCTAATTTGTTTCCAGACGTCGTATC 92941 37 100.0 34 ..................................... GCTAAGCATATTGCTGTGTGTCTTGCTTTTTGTT 92870 37 75.7 0 A.........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 96.1 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGGCTCATATACTACATTGGATTATACAGAACTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATATTCTAGCAACAAACATAATTCAAAATTAAAAATACGAAACACAGTAATTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATGTCAACTTTTTTCAGAAAAATGAATCATGTTCAAAGTACGTTAGTTTAAAATCAATTTTAAGGTAGATCCCCACTTTGCAACATGAACAAAAAAGTAACTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 1833-1229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000038.1 Leptospira kirschneri strain ZV013 ZV013_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1832 37 100.0 32 ..................................... AAAATATCCTTCGTTTTCGGAATCTTCAGTTT 1763 37 100.0 32 ..................................... AAAATATCCTTCGTTTTCGGAATCTTCAGTTT 1694 37 100.0 34 ..................................... CTTATCAAGCAGTCCCTCTTCGACCAGCATAAAA 1623 37 100.0 35 ..................................... TCTGGCTTGATCGGCATTTTGCGTCCTCGAATTAT 1551 37 100.0 35 ..................................... GGAAGATAAAGCACTTGAGCGCTTTGATTCGATTG 1479 37 100.0 34 ..................................... CTGCTCCGGTGCGCGTAACCGTAAGGGCCGTGTT 1408 37 100.0 35 ..................................... TATCGAATCGGCCTATAGGAGTTCCGTAGGAGACC 1336 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 1266 36 75.7 0 ..........A..G...G..G....CT...A.-...G | TC [1239] ========== ====== ====== ====== ===================================== =================================== ================== 9 37 97.0 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGTGAATCCTGAGTCGTAGACCGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 78550-79377 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSQ01000077.1 Leptospira kirschneri strain ZV013 ZV013_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 78550 37 100.0 33 ..................................... CCTTGCTTGATGATCTGCAATCGTATTCTCTTT 78620 37 100.0 35 ..................................... TCATAAGCATGTCGATAATGAGAACTGTGATAACT 78692 37 100.0 34 ..................................... TAACAAAGAAGGTTGGATGAGTATTGTTAATAAG 78763 37 100.0 34 ..................................... AACTGTTCTTCTCGCACTTTTTACCTCTTTTTAA 78834 37 100.0 35 ..................................... TAATTGTTTCACTTTCTTCCCTTATTTAAATAATC 78906 37 100.0 36 ..................................... GAGTGCCTCGTAGGTATAGAGTGCTTCATTTAACGG 78979 37 100.0 34 ..................................... TTGACTAATAAGAATTTTGACGATTTCTTAAATT 79050 37 97.3 37 ..........................A.......... TAACCCTTCTCCAGTAATGCAGTATTCAGATTCTCCT 79124 37 100.0 34 ..................................... AGCCATGTGTCCGACGATTGCGTTTGGAATCCCG 79195 37 100.0 34 ..................................... AAAAACGAATCGTTTCGATTGCGGAAGAAAACAA 79266 37 100.0 38 ..................................... TCTGGGAACCCTGGACGCGTGATCGTACCCGGAAGTAT 79341 37 94.6 0 ........................G.A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.3 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAAAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CTAAATGCGTCAGCACTGACGCATTTAGTTGGTCTGCTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTATTTTTCCTCCATCGGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //