Array 1 1065-1813 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSST01000003.1 Pseudomonas aeruginosa strain LMG5031 IPC878_3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1065 28 100.0 32 ............................ CCATGGCTGGGCCGATCTCCCATCGCCCGCAA 1125 28 100.0 32 ............................ ATGCCCGGCACAGCGAAGCCATGAGGGAGAAC 1185 28 100.0 32 ............................ TCCTTCAGGTAACGGCGGCGACCGCCTATCTG 1245 28 100.0 32 ............................ TGCGCACCGGTCGCGGCGGACGCTGCGCTACG 1305 28 100.0 32 ............................ TGCTGCCTCGGATGCGTCGGGAGTTCGGCCCT 1365 28 100.0 32 ............................ AGCGGGCTGCCAACGGCCGACCTGCTGCTGCG 1425 28 100.0 32 ............................ CAGGCGTTCTCGGTCGGGTTCGGTCTTGTCGC 1485 28 100.0 32 ............................ TGGAACACCAGCCGGACCCGGACGACCCGACC 1545 28 100.0 32 ............................ TCTGAGCGGATACGCTCGATCAGCAACGGTTC 1605 28 100.0 32 ............................ GAAGCATGTTGCTCAGGTAAAGACGCATATGG 1665 28 96.4 32 ..C......................... TCGAGGCCGATCTCCCGTATCCAGAATCCACC 1725 28 100.0 33 ............................ ATCGACAACGTGATGGGTATCGCCCAGCAGCGT 1786 28 92.9 0 ..G..................G...... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CAACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGTGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGATGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGATATGTGATCCATACGAGTCCATTCGCGCGCGAACGGCGAGGTTTATCGCCCGTATCGGCCGTCTTGAAATGGCCTCCAAGGCCCGAAGCTTCCGACCCTTTTTTCGGACCGTTTCTTACGCCCTTGAAAATCAATGAGTTGCAAAGACTTGAAAAAAGAGGGTTTCAGACCGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCTGGGCTA # Right flank : AAACGGAGGCCTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATCACGCCGTCGCGGCTCCAGCCCATGATGTCGTAATCCTGGCCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCCTCGCCATCCTGCACCTGGACTTCGTAGCCCTGCTTGCGCAGTTCGCTGGCGACGTCTTCGCAGGCCGGTCGCGCCACTTCGGAAATGAAGCGGTTGACGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 62988-62419 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSST01000004.1 Pseudomonas aeruginosa strain LMG5031 IPC878_4.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 62987 28 100.0 32 ............................ AGATCGAACACCCCGTAACCGACGCCGGTAAT 62927 28 100.0 32 ............................ ATCGGCGGCAAGACGCCGGCAGAGGTGGACGC 62867 28 100.0 32 ............................ AGGTCGCGCTCGTCACGATGCCGAGCCACCAT 62807 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 62747 28 100.0 33 ............................ TGTTGCTTCTTATCGATGGTGAGCTTGTTCGCT 62686 28 100.0 32 ............................ ACGGCGCCATCGCGCCGTTCAAGCGCAACCTG 62626 28 100.0 32 ............................ GTGCGGCGTTCATGCTGAATCACTCGGAATCA 62566 28 100.0 32 ............................ GGTGGCTGCACGGTGGTGACCGGGATGATGCT 62506 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 62446 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTGGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : TCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCATGAAGGACCGTGGCGGCGGGCCCCCGGAGCGACGATGTAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAGCTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCGTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAATG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5126-5826 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSST01000016.1 Pseudomonas aeruginosa strain LMG5031 IPC878_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5126 29 100.0 32 ............................. CGACCTGACTGCGCCGGCAGAGCGCCCCTATC 5187 29 100.0 33 ............................. TCTGACCTGGGCTTGAGTGGTGCGGCCACCTTC 5249 29 100.0 32 ............................. ACGACTACGACGGTGTTGACGTGGATTTCGTC 5310 29 100.0 32 ............................. TACTGCGTGCGCGGATCGCCGCGCTGTACGCC 5371 29 100.0 32 ............................. TGGCGCAACGGCCTGGAAGCGCTGCTGGTGCC 5432 29 100.0 32 ............................. CGATCATGACCGCGGAATGCTCGGCCCTGGAG 5493 29 100.0 32 ............................. GCGGGCAGGTCGGCCGCATCGAGCACGGCGGA 5554 29 100.0 32 ............................. TATGTTATCCCGTCCAGGGGATCCCGGCCGAG 5615 29 100.0 31 ............................. AACGGCCGCCTCGAATTCGACGCCGGCTGGA 5675 29 100.0 32 ............................. GCCATGCAGATGGCCATGGAGTGGGGGAACCC 5736 29 93.1 32 ..............C...........G.. CAGGAGAACGCCTCATGGTCGCTCGCAGTTTC 5797 29 89.7 0 ...........A.......CA........ | C [5802] ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CATAGGCGTCGTTGTACAGCGCGATGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTCGCCGGCAACAGCATGGCCAGCGCCGCCCGCAGGCTCGCCGGCCAGCCGTCCGGCGGACCCAGGGGCGAGGCGGCCGCGTCGAGCCTGCCCAGCAACTCGCCGACCGCGCCTCCGTGAGCCAGGAAGCGCGGGGCTTGGCGGTCGCTGTTCGGGGCTGGTTCGATCAGGAAAGGCTGGGTCATGTCGTCGGCGTCGTGTCCGTTGCTGGATGAAAAGGGCAGGGGCGGAACCCTTGACCATAGGAGGGCCACGGCTGCGCTTGCGTTCAATCCGCTTGGGGGACTGCGTGGCTCCGACGCGGGACAGGCTTCGGCTGGTCGCCAGGGTTGCACTGGATCGGACCGCGGTGTGGCGCGGCTTTCATTGCCGACGGCGGCTTGGCTCGGTGGCATTTGGGCCGCTGTTTTTCTTTTTTGAAAACAATGGGGTACGGTAAGG # Right flank : GTTTCCGAACGCAGGGCTTTATATTCACGACGAGCTGGCCGCCGCCCAGGTGTTCGGCTGACCCTTTCAACTGCCTACATAGGCGTCGTACAGGCGCGGCACCATGGGCTGGGGCGCTGTTCCGCGTGCCAGCGTTCATGGACCGCCGGCATGGCCAGCCAGTGGCGGGCGCGGCCGATGCCGGCGCGCTCGAGACGAACGGCAAGGCCCGGCATAATTGTTAACAGGGTCCATACCTTCCTGCGACCCATCGCTTGCCAGGGGGAGGTGGGCAGGCCTACCTGTCGCTGAGCGCTACTTGACGAGAATCCTGCCTACAGGAGTGCGGGAGGTCTTCCCCCTTCATGTCCGGTCGAGGCCCAGGATGACTGCCTTGGGTTGGCGGTGGTGGCTATATAGTGGCGTCTTCTTTTTCCCTGTAGGATTGCATCGTGGCAGCGAATCGACCGATGCGGGTCAAGTCCAGGACCCGGCGGTGATCGCTGGATAGCCTTAGCCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14817-15886 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSST01000016.1 Pseudomonas aeruginosa strain LMG5031 IPC878_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14817 29 100.0 32 ............................. CTGGTTGGCATCAATGCCGAGCAGCAGAAACG 14878 29 100.0 32 ............................. GCTCAGCTGCTGGGCCAGTTCGCCACGGTCAA 14939 29 100.0 33 ............................. GTGAGGGGCTACCGGTATTGCCGGACAACCTGC 15001 29 100.0 32 ............................. GGTTCGAGTCCACTTCCCCCCACTCAAGAGCC 15062 29 100.0 32 ............................. GCCCCGCAGTCCGCCGCATAAACGCCCTCTGC 15123 29 100.0 33 ............................. ACATGGGAATCTCCGGCGGGCGAGTGGGCCGGA 15185 29 100.0 33 ............................. GCATGAACCAATCAACTATCACCGACGCTCAGG 15247 29 100.0 32 ............................. GCGATGCCTAGCCCATCTGATTCTCTGATTCC 15308 29 100.0 32 ............................. ATGGTCGACGTGCTGATCCTGGCAATGCGGCA 15369 29 100.0 32 ............................. ATGAATGGACGGCTCGCAGAGACGGATAACGC 15430 29 100.0 32 ............................. ATCCGGCAGGCGCAGTACCGGGCGAAGAGGKC 15491 29 100.0 32 ............................. ACCTCATCGCCGCCAACGCCGCGGACCTGATC 15552 29 100.0 32 ............................. AGAACGCGACGCAGAAACCTGGGGATGGAGGC 15613 29 100.0 32 ............................. GGGGAGTTCTGGGAGGGGTATTTCCATGATTG 15674 29 100.0 32 ............................. AAATGGCAGGCTCAGACTGGGGGCGTGTTGGA 15735 29 100.0 33 ............................. AACGTACAGACCTCTTACGAGAATCTACGACGC 15797 29 100.0 32 ............................. GGAGCCCTGCGTATCACCGGCGGGCCACCGGC 15858 29 79.3 0 ...C.......ATAC.............T | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.8 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CCCGCATCATTCCCACCATCGAAGAGGTGCTGGCCGCCGGCGGCGTCGAACCTCCCGGCGCGCCGCCCGAGTCGGTGCCGCCAGCCATTCCCAATCCGGAGGGGATCGGCGACCTGAGCCACAGGAGCCAAGGGTGAGCTTCCTGGTCGTGGCGGCGGAGAACGTCCCGCCACGCTTGCGCGGACGCCTGGCGATCTGGTTGCTGGAGGTACGCGCCGGCGTCTACATCGGCGATGTGTCGCGGCGTACCCGGGAAATGATCTGGCAGCAACTGAGCGAAGGTGTCGAGGAGGGCAGCGTGGTGATGGCCTGGGCCAGCGCCAACGAGTCCGGCTACGAGTTCCAGACCCTGGGCGAGAACCGCAGGCGGCCGGTGCTGTTCGATGGGCTGCAACTGGTGGCGTACCAGCCGTGGGCGCGAGAGGCCGAATAGCGGGCGCTGATTCGGTAGATTTCTTGAGGTGATTTTTCTTCTTTAAAAACAAATGGATGTGGGAAGT # Right flank : TTCGGCGTCGATGCTCACCCCGGGGATCAGGTTGTGCTCCCCGCGTGCCCTCGCTCGACTCCGCTGTGACCCGGCTGGCATCGGCCGGGCGGTGGAAAAATGCAGCGAACCGCCAAACGATTCCACCCTGCGGAACCGCGAGCCGTTGTGTCGTTGCCGGCGATGCCGTTAGCTGGTGCACGGCCGTATCACTCGACGGCCACAGTCCAAAAAGAGCGGGAACAGCCGCCATGCGAGGTGTCCGAATGCGACCTATCTCTCCAGTCCCCGTATCCCGAAGCATCGGGGCGCTCAACTGCCGCTCCTGAGCCGTTCCATCCGTTATTTCTTCCTCATCCGCATGACGGTCTTTGCCGTCCTGGAGTTCGTCCATGAACGCCTCCGCTCACAGTGCGCCGAAGCCACGCCAGATCCTGGCCGCGGTAGTCGGCAACGCACTCGAATGGTATGACTTCATCGTCTACGGCTTTCTTTCCGGCATCATTGCCCGGCTGTTCTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //