Array 1 1915-239 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCXZ010000020.1 Escherichia coli strain 1505e NODE_20_length_85476_cov_23.750015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1914 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 1853 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 1792 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 1731 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 1670 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 1609 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 1548 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 1487 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 1426 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 1365 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 1304 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 1243 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1182 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1121 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1060 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 999 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 938 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 877 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 816 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 755 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 694 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 633 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 572 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 511 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 450 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 389 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 328 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 267 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAACATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95372-94671 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCXZ010000008.1 Escherichia coli strain 1505e NODE_8_length_110571_cov_21.407890, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95371 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 95310 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 95249 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 95188 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 95127 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 95066 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 95005 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 94944 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 94883 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 94821 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 94760 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 94699 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //