Array 1 29-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNNM01001472.1 Vibrio parahaemolyticus strain B6_7 B6_7_contig1472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29 28 100.0 32 ............................ GTATGTAAATGGCTGCGCTACAAGACAGATAT 89 28 100.0 32 ............................ ATAATAAGAAGATCGCAACCTTCTAACGATTT 149 28 100.0 32 ............................ ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA 209 27 96.4 0 ...........................- | ========== ====== ====== ====== ============================ ================================ ================== 4 28 99.1 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : AAAGTGGCAGATACCAGCTCAGTTTGCCG # Right flank : | # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-609 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNNM01001121.1 Vibrio parahaemolyticus strain B6_7 B6_7_contig1121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 43 28 100.0 32 ............................ ATAATCAATATTTGCTTAAGTCGCTTATTGAA 103 28 100.0 32 ............................ TTGGTGCGGGCGCGGTGGGTGTTCCTCTTACC 163 28 100.0 32 ............................ ATTCCTAAAGGTATCAACTACGTTGATTTGCC 223 28 100.0 32 ............................ ATTGAGGGCGGTTGGTACATTGAAGCCAAAGA 283 28 100.0 32 ............................ ATTGAGGGCGGTTGGTACATTGAAGCCAAAGA 343 28 100.0 31 ............................ ATATACCAGTCATTAGACACAGCCTGTGCGA 402 28 100.0 32 ............................ TAGTGAACAGGGTGTTATGGCTCGTGATAAGA 462 28 100.0 32 ............................ TATCGTAGTCGGCACTTTCTATAACCTCTTCA 522 28 100.0 32 ............................ AACAACGTTTTCATTGCGTCTGCCATCCCCAT 582 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : CCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AAGTGGTGTGACACTTGCTATTACCAAAATGAGTTAACTGCCACACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //