Array 1 6354-5987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVCH01000064.1 Enterococcus faecalis strain 556_EFLS 143_6380_161052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 6353 37 97.3 29 ....................................A AGCTTGCGTAAGTGCCTTATTCGCCATCT 6287 37 97.3 29 ....................................T TTCACCGAAGAACCTCATTTATTCCGTTC 6221 37 100.0 29 ..................................... AATCAAAAGTGGACATGGCGAACAATTGC 6155 37 100.0 29 ..................................... TGATAATGACGGCGAAACACGTAAACATA 6089 37 97.3 29 ....................................T TCATCAAACAGGTTGTGACTATGGCTGGT 6023 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 98.7 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Left flank : ACTTTGGAGAAAAAATAATTCTCCGA # Right flank : GATATTTTGAATTTATGTTATAATTATTGGTTTTAGAGTCATGTTGTTATCTTCGAATGAAGAAGAGGAGTGCTAAAAGGTTACTGTTTCCAGTAGCCTTTTTTGTTATTTTTATTTCTTTCATTAAAAAAGTTTAGTAAAATGAAAGTATCTTAAATTTTAAGTGAAATAATTTTAATAAAGGAGAACAATGATGGAAGGAAAGATTGTTTCAAGTACGAGTTCAGCCCAAAGTGCTGTCTCAAAGTTGACTGGTATCAACGAGCGTTTAGAAGCCCCAAAGGTAACCTTTTCAGGAAGTACAGTTTCAGGAATGACCAAAGGCAAACAAGTAAATGCTCAAGTTTTAACAAACTTAACAGATTTAGCCAATTGTGTTTGGAAGCAAGCCGAGAAATTCCCACAAATTGCAGAAAAAATTGCTTATCGTGATCAACAATCTGCGGAACAATTCCGAGGAGGTGGGCGTTAAGTATGAGTGAAAAAGAGAGAAATGATGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 10049-9814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVCH01000001.1 Enterococcus faecalis strain 556_EFLS 3_62380_1434689, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 10048 37 97.3 29 ....................................A AATAATGCCTAGTTATAAAACCTATACAA 9982 37 100.0 29 ..................................... CTTATCTCTATACTCTAACTCTATACTCT 9916 37 100.0 29 ..................................... TCGGTTCGTCTAGTTGTTTTAAATCGTCT 9850 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 98.7 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : ATATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : TTTCGGCAAGGCGAACCCTGGTATTTGGTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGCCGAGCTACTTCAATTTTCGGAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTTGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //