Array 1 394379-395446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 394379 29 100.0 32 ............................. GGGTCGTAACTGCCGCCGTAGGGGCAGGGATC 394440 29 100.0 32 ............................. CCCGTCCGCGCCTAAGCGGACGCTCTTAACGC 394501 29 100.0 32 ............................. TTTTCGGGACGCAGGCCGGTAACCCGGAGTTG 394562 29 100.0 32 ............................. CCGAGGCCGCCGATGACATCGCGCCGGCCGGA 394623 29 100.0 32 ............................. CAAGAGTTGGAAGCGCTCGCCGCTATCCCGGA 394684 29 100.0 33 ............................. GTGGTGCCGGTGTGTATCAGCAGCTCATTAACC 394746 29 100.0 32 ............................. TCGTTCACGGATACCGCGCAAGGTCGGCGTTC 394807 29 100.0 32 ............................. ACCCCGCTCGAAATCCTTCGGCAGCCACCGCC 394868 29 100.0 32 ............................. ATGCCCTTGTACTCCGCCAAAGAGATCAACCG 394929 29 100.0 32 ............................. CCTGTCAGCGCCTAAGCGGACGCTCTTAAATC 394990 29 100.0 32 ............................. GGCATTCTCTTGCTGACTATTGATCTGCGAAT 395051 29 100.0 33 ............................. TACAACTACGGCCAGGCGGGCGGGACGATTGGC 395113 29 100.0 32 ............................. CCATGTGCATCGCCTGTTTCGACACAGACTCC 395174 29 96.6 32 ............................C GCTTGAGGCCGAGCACCCGGCCGGTGTTGATC 395235 29 100.0 32 ............................. GCAATACGATTTCCACGGGGGATCTGAAAGAG 395296 29 96.6 32 ..............G.............. GAACAGCGGGTCACCTTCAGATCCGGCTGAAA 395357 29 96.6 32 ..............G.............. CAGCTTCGCGGCGCAGCCGCTCCCACCCGTTT 395418 29 96.6 0 ..............G.............. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 CCGTTCCCCACGCCTGTGGGGATGAACCG # Left flank : GTCCTCGCGGCAGGCGGCGTGGAGCCGCCCGACGCGCCGGAAGACGCGGTCGGCCCCGCGATCCCCAATCCCGAGAGCCTGGGCGATGCTGGTCATCGTGCTTGAAAACGCCCCGCCGAGACTGCGCGGACGCCTCGCCGTATGGCTGGTGGAAGTGCGGGCCGGAGTCTATGTGGGCGACCTGTCCAAGCGGGTGCGCGAAATGATCTGGACGCAGGTAACGGAAGGCATCGAAGAAGGCAATGCCGTCATGGTGTGGTCCACCAACACCGAGTCCGGTTTCGATTTCCTCACCCTGGGCAAGAACCGCCGCATGCCGGTGGAACTGGACGGCCTCAAGCTGGTGTCGTTCCACCCGCCCGAGCCGGAAAACGGCGCAAGCCAGGCGGGCGGAAATGCTCTTTGACAACTCGGAAAATCCAGCTTCCCCGAGAGCCGTTCGGTTCGGTAGAATTTTCTGGGCTCAAATTTACCATTGCTAACAACAGGTTAGAAATGGT # Right flank : GATTGCCGTCACCCACCGCGGCAAAAAAACCGGTTCCCTACGGCCGGACGGGTCGGGCAAGAAGCAGGGTCAGCAGGCGGGTGATGCCGTCGGCCAGCCGCAAGATGATCCACAAGACGAGCAGGGCTCCGGCGAGCACATAGCCGAGCAGCCAGGAAAGTAACAGCGTCAGCAGCACCGCGGCGCCGGCGGAGCCGGTATAGCGCCAGAGTACGGCAACGGCTCCGAAGAGAGCGAGATACGGAATCCAGGTAGTTTCCGGATTGAGGCTCTCGACCCGCTCGGCGAGCGCGGCAAACAGGTTCGGCGGTTTCATGAAGCAAAGAGTCACCCATGCGGCAACGGCGCCTAGCCGTTTGAATGACGGCGGACGGCCCGGTCATGAATGCCGGCGGCGATCGATGCCAGATCCACGGCCCAGGCCATGCCTCCGGTCAGGAATGCGATCAACGCCGTGTCTATGCCGCCAATCAACAGAGCATCGCCCAGTGACCGGGCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCACGCCTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 682487-685382 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 682487 37 100.0 33 ..................................... CTGCAGGTGGTGCATGATGTAGCCGATCCAGTT 682557 37 100.0 34 ..................................... CGCGTGCGGCATGGTTCGATACTGCGAATCGCAG 682628 37 97.3 34 T.................................... TTGGCGATTGGTGCAGCCGTTCGGATAGATCGGC 682699 37 100.0 35 ..................................... GCATTTGCCGGGACAACCACAGGGCATCCATCGCG 682771 37 97.3 33 C.................................... ACGTGTTGAACGAGAAAAAAACCTGCGCGAATT 682841 37 100.0 34 ..................................... TATGAATTTAGGCGTTATTAGGCCTATCAAGCGC 682912 37 97.3 34 A.................................... TCGGTGATCGCGGACACATCGGTGTAGTAGACCG 682983 37 97.3 36 T.................................... TGGCGTGGTCGGCATCGTAAGGCAGGTCGGCGATGC 683056 37 100.0 34 ..................................... TAGTCGGTACCGCGAGTGAGATAGGCGCCCGAGT 683127 37 97.3 34 C.................................... ATTACCAAGGTGGATTTTATGGTCGGGCTGCCAG 683198 37 97.3 34 C.................................... AACCGGATGCCAAGCTCATCGCAAGCGTCACGCC 683269 37 97.3 35 T.................................... ACCGTCGATCTGAACTCGAAATGGAAAAACGTCGT 683341 37 100.0 34 ..................................... TTGCTCATTCAGCCATTCCTCCCAGGCGTTCAAC 683412 37 100.0 34 ..................................... ATTACTAAGAAATGGCTTGAACAGACTGGTGCTT 683483 37 100.0 34 ..................................... TCTAGCCGACGGACCGCGTTGGCCAGGTCCGCCA 683554 37 100.0 34 ..................................... CTGGGATATCAGGATATCGCTCGCCAGTTTCACG 683625 37 100.0 35 ..................................... TTCGAGGATGTGATCATCCATGATCGTGGCCACGG 683697 37 100.0 34 ..................................... ATGGCGCGCTGACCCTGATCAACGCCAGTGGCGC 683768 37 100.0 35 ..................................... TGAATCTGGTTGTAGACGTCGCCGTACCCGGCGGA 683840 37 100.0 34 ..................................... CCACGTGAAAGACAGCGATTCACCGGACAGGTGA 683911 37 100.0 35 ..................................... TTGGCGTACGCCGCATCGATCCGGCCCGCGGATTC 683983 37 100.0 35 ..................................... ACCTGCGACACGATAGCAGGCCCAGCCGCCCGACT 684055 37 100.0 35 ..................................... GACGTTCCGCCCCGCCAGGCCGGCGACGGCCCGCG 684127 37 100.0 36 ..................................... ATCGAGAGGGTCGCCGCCTCGGTGGGCGCGTGGGTA 684200 37 100.0 35 ..................................... ACGTGACCACCTGGAGGGGGCGGCGGGAGTTCACG 684272 37 100.0 34 ..................................... TCCATCCGCGCCGCCGTGCGAACGATCTCACCAC 684343 37 100.0 34 ..................................... AAGAAAATCCTGCGCCATCCAGTCGGATGATCCA 684414 37 100.0 35 ..................................... ACGCCAGGCGAATCCTTCCGGCAGCGGCACGCCGG 684486 37 100.0 34 ..................................... TTCGCGTTCGGTGGCCGTGTATTTCTTTGTCGTC 684557 37 100.0 34 ..................................... TTCCCCGCCAATGGCATTGCCTATCGTGTACCCC 684628 37 100.0 34 ..................................... TCCGCCGCAGGATTCGAATAGATCGATGTTGGGG 684699 37 100.0 35 ..................................... GTTGACGAGTGCCCGCAGCTCATCGCGGGCCCCGT 684771 37 100.0 34 ..................................... CTGGGCAATGCCGCCCAAATCGGACAGCATGGAC 684842 37 100.0 34 ..................................... ATATTCGGCCGCCAGCGCCGTCGCCGTTTCGCCG 684913 37 100.0 36 ..................................... CTTTATGCCGAAAGCCCGGATGGCAGCGTCCGACAC 684986 37 100.0 35 ..................................... GATCGAATACCGCCCACCAGCGCCGTTGTACACGG 685058 37 100.0 34 ..................................... CGATTGCCAGCGCGTGCTCGGCAATGACGAAATC 685129 37 100.0 37 ..................................... ACTGAATCGGCGTCGGCGTCGGAAAGCTCGGATGGAT 685203 37 100.0 34 ..................................... TTACCAAGGTGGATTTGATGGTCGGGCTGCCAGA 685274 37 100.0 35 ..................................... AGTTGCAACAATTTCGACCAGCGGACAGGCAACGT 685346 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 41 37 99.5 34 GTATCTCCCGGCTCAATAGCCGGGAGTGGATTGAAAC # Left flank : ATCTTCAGCGGTGAAGGAAACCCATGCTGGTACTCGTGTCCTATGACGTATCGACCGAAACTTCGGCAGGCCGGCGCCGGCTGCGACGGGTTGCGAAAATCTGCCTGAACCATGGACAACGCGTACAGAAATCGGTTTTCGAATGCCGGGTCGATCAGGCCCAGCTCGAAACCCTCAAATTCCAGTTGCTCGACGAAATCAACGAGGCCGAAGACAACCTGCGGATTTACCGGATTCCCGAACCGCTGGACAAGCACGTGATGGAATTCGGCCGCTTCCGCGCCACGGACTTCGACGACACCCTCATCGTATGACCGCCGAACCGCGCGAACCTCGAGCGATGCGAAACAGCCGGCAGGTTCGCGCACATGCCAACTCTCTGTTCCTTCAGACCTCCGTCCCCGCTTCCGCCCAACACGGCCACGTAGATGAGCGCGTTCTCCCGGACCTCGCGCTTCCTGCCAGAAAAATGACCTTGTATCATTGGGTTGCCGAAAGGC # Right flank : CAGACCTGAATCCGTGCTCCCACCCTCTAAATAATTCATAACATATTGAATCCATTGTATAATTAGCCCATTTTCGATGTCACCCATTTGATCATGCCGCGCTTTGAAGTCAAGCAATCCAGCAAGCTGCAACTGACCTCGTATTCCGGCCTGGCGCTGATTGGCCAGTGCTGCCAGGCGGCGCAGGTGGAGGCGGTCATTGACCCGAAGATCCCGGTGTCGCAAGGCATGCGTACCTCGGACATCGTCAAGAGCGTGGTCGGGCTGTTGAGTCTGGGCAAGAGCGACTTCGAAGCCATCGAGCCATTCCGGAATGATCGCTTCTTCAAGGAGTCGCTGGGGCTGACGAAGGTGCCCGGAGCCGTGTGGCTGCGCCAGCGTCTGAATGCCAAGGCGGAAGCCATCCGCGATCTGGCCGATGAGCTTTCCCTGAGGCTGCTGGAGCGAACCGAGGCGCCGATCACGCCGCACAAGGGCTATGTCTGCTGCGACATCGATAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCTCCCGGCTCAATAGCCGGGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-15.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 1905660-1904431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1905659 28 100.0 32 ............................ CGGCGAACGTGATGATCGTGCTCTTGTAATGC 1905599 28 100.0 32 ............................ TTATAGGCCCCCACCAGCTCGCCCAGGTCACG 1905539 28 100.0 32 ............................ CGGAGATCACGATCGGCATTTTTTCGCATACG 1905479 28 100.0 32 ............................ TCGATGCTCTCCGCGTCATCCGCATGGATCTG 1905419 28 100.0 32 ............................ AGTTCGCGCAAAAGAAGATCGCGGAGTTCGTG 1905359 28 100.0 32 ............................ GGTCCGTCTTCGCGGTGGCGCTGTCCATTCAG 1905299 28 100.0 32 ............................ TCCCGGTGGCGCTGTCCATTCCGGTACCATTC 1905239 28 100.0 32 ............................ AGTATCGCCGGACACGAATTCGACAGCCGCGC 1905179 28 100.0 32 ............................ TGGATTCCATCAGCACGCAGCTGGCGACGGCC 1905119 28 100.0 32 ............................ TGACGCGTAAGGAGGCGCATGCATGGATGCGC 1905059 28 100.0 32 ............................ TATCCAAAAGCTTGCCTATCCAAAAGTCAGCC 1904999 28 100.0 32 ............................ ATGATATCCGCAAAAATCCCAGCCTCCATGCT 1904939 28 100.0 33 ............................ CATGGACGGCTGCGTCAAAGGCATTCCAGAAGC 1904878 28 100.0 32 ............................ AGGGGTTCCGAAACAGCCGATCATGTTGAACG 1904818 28 100.0 32 ............................ AGCGGTTGCGCCGCTGACAACGTCGACCTTGA 1904758 28 100.0 32 ............................ TATTTCAACCGCGGCAGCGACTACGCCAGCCA 1904698 28 100.0 32 ............................ TGGCCGAATTCGACCGGCTGAACGCCTCCCTC 1904638 28 100.0 32 ............................ AGAAATTGTCTCCCCCGCGAACTGTTTCAACG 1904578 28 100.0 32 ............................ CATGACCTTCTCGAACGGCGTGGCAGCCGGCT 1904518 28 100.0 32 ............................ TAAATGCCGGAGAGAGCGCGACGGTGATCGTC 1904458 28 96.4 0 ..................C......... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : TCGACCGCCTGATCCACAACGCCGAGGTCATCGCCATCGAGGGTGAGTCCTACCGCCTCAAGGAGGCCAAAGAACGCTCCGAACAACGCGCCAAACGGCGCCGCAAGAAAACCGAGGACAACTTATGAAACACCCGCATCAAGCGTCAGGACTGACCCGGGGCCTGCCGCTCCTCATCCCCGACCACTGGACGCCCGAGCAGGCCCAAGCCGTCTTCGAAGTCCTGGACGATCTCCGCGAAAGGATCTGGGAGCATTATGCGCTCTCCCTACAGGAGCTTTATCGGCAACAGCGGCTGCCCGATGAAGCGAACCAACCACCTCCCGGTGATCCCGCCGAGCCGTTTTGAGGCAGTCATCACCACACCGAAAGGGCCGCTCTGCGGCCCTTTCTTTCGGGCGCCTTCCAACCGAAAACATCGCCATATATCGGCGCTTCCTCACCGCCAACTAACGCCGCCAGATATCCGCGCTTCTTGGCAGCCGCTAACAGGAGCAGAT # Right flank : TTCCGAGGCGTCGCGGCGGAGCCGCTCCCACATTTCAAAACGCCTCATAGGCAGCTCGAAAGTGCAGGCCGCGGGGCAAATCCCAAAAACGCAAAAGCCCTCGCAGCGGGCGCTGCGAGGGCTCATTTTCGCCGGGAACCGCGGCTTTACGGCTTGGAGATCGTGATGTTGACCCAGGCGCCCTTGGCAGGCACTTCCCAGACTTCGCCGGTGGTGGTCAGCTTGCCGTCGGCGCCGATCCCCCAGTCGTCCACTTCCAGCACGTTGCCGGTATACAGCATGTAATAGCCGGTCTTGGGCAGGGTGATGGACTTGCTGAACGCGCCGGCGGTGCCGTCGTTCAGGGCCAATCCTTTGAGAGCCGTGGGATGCATGATGAGCTTTTTCGACGCCTCGTACGTGTCGGCATCGTAGCCGGAATCCACGTAGTACATCGTGTAGCTGTCCGGCTTCATGGGATACAGCTCGGGGTCCACTCCCGCGGGCGCGGTGTGGTCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1911447-1909077 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1911446 28 100.0 32 ............................ GTTCTCGGCGCACACAGCTTCCATGCACAACA 1911386 28 100.0 32 ............................ ATCAGGGTGCGCAGCAGATCGATGTGCTCCAG 1911326 28 100.0 32 ............................ ACGGCGTTTTGGTGGTCGACACGGCCGTGAAA 1911266 28 100.0 32 ............................ CGGTTGTTCAGCTCGGTCATGCCGACAATGCC 1911206 28 100.0 32 ............................ GGTCGAATCGATGCCCTTGAGCGTGATGGTCG 1911146 28 100.0 32 ............................ AGCCCGAATCCGGGCAATATCCCACTCATTTC 1911086 28 100.0 32 ............................ AGCAAGCGAACGCGCCATGAGCATTGGCCGAT 1911026 28 100.0 32 ............................ CAGACACGTTCGGCGCCACGTTGCGGAACGCC 1910966 28 100.0 33 ............................ CTTGAAAGCCAGCTTCACCAGCCGGTTGAATTC 1910905 28 100.0 32 ............................ TGCGGAGCATCCAATTCCGCTGGCGCGTCAGC 1910845 28 100.0 32 ............................ GGCCCATCCTCACGGTGAAGCTGGCCGGCTTC 1910785 28 100.0 32 ............................ AAAAATGTCAATCGCCGCGTAGTCACGGGGTT 1910725 28 100.0 32 ............................ TGGCACGTCCTCGAAATCAAGACCGTCAACGC 1910665 28 100.0 32 ............................ TACGTGACCGAGCAGGTGTCACGCGCGCATAA 1910605 28 100.0 32 ............................ AGAAGCAGCGTGACCGGAATCGCGACGACATC 1910545 28 100.0 32 ............................ ACTTGCGCCGCTCCGCGCCAAGTTCGACCAGC 1910485 28 100.0 32 ............................ AAGACCTCGCGCGGTCGGCGGAAACCCAGAAG 1910425 28 100.0 32 ............................ ATACCGCTCATAGCCCACCCGCACCAGCTGAA 1910365 28 100.0 33 ............................ CGCTGTCGAGCCTCACGGTCTGGCAGACCATCG 1910304 28 100.0 32 ............................ TGGAGCATTGAATATTTCGCCCAGATGCAATG 1910244 28 100.0 32 ............................ CAAGGCATTGCGCGAGCACTACATCACGGATT 1910184 28 100.0 32 ............................ AGCCGCTGGGAGAGCTGGGAGACGATGTAATC 1910124 28 100.0 32 ............................ ATGTTGACGGCATGGTCGACCGTGACGCAGAA 1910064 28 100.0 32 ............................ ACCGGGTTTGACGTGCCCGGCGTTGACCTGAT 1910004 28 100.0 32 ............................ TGGAGCGCGCCGCCGCCTTTGACGCCAAGAAC 1909944 28 100.0 32 ............................ GTCATGGCCAGCGTCACCGGACTGATGGACCA 1909884 28 100.0 32 ............................ AACTACACCGGGAAGATGGGCCGGCAATCGAG 1909824 28 100.0 32 ............................ ATCGCCGTGGAATCCGCCCCGCGCTTCTTCGA 1909764 28 100.0 32 ............................ TGGGGATGGAGGCGAAGACGCGACTGGACTGG 1909704 28 100.0 32 ............................ AGAAATGCTTCGACGTCGGCTGACCATCCACC 1909644 28 100.0 32 ............................ ACGGCAAGGTTGACCGTGTGCAGCGGCTGGTA 1909584 28 100.0 32 ............................ GTGCACGATCGTCCACAATCGCGCATTCGAAA 1909524 28 100.0 32 ............................ AGGAGCCCGCGCTTCTCCATCGCGAAGCCCTT 1909464 28 100.0 32 ............................ AACTGCGGCGCCACCTTCAGCTTCGCCCGGTA 1909404 28 100.0 32 ............................ CGGAACTGCGCAAGGCGCGGCTGGTTTGCACG 1909344 28 100.0 32 ............................ GGAGCACAGCAAGCGGACTTGCTCACGGATCT 1909284 28 100.0 32 ............................ AATACCCCCGCACTGGACCTGCCGGCCATCAC 1909224 28 100.0 32 ............................ TCGCGGCGCGGAGACGCCGGAGGCCGAGTACC 1909164 28 100.0 32 ............................ AGCACCAATCGACGCCGGTGTATTGAGTCCGA 1909104 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 40 28 100.0 32 CTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGGAATTGGAAAAGCTCATGGCCCTGAACTGGCTGACGGGAATGCGCGATCACACCGAAATCGGCGAGATTGCGGCAGTTCCGGCCGATGCCGTACAGCGGATCGTCAGGCGGGTTCAAGCCAAAAGCAATCCCGAGCGGCTCCGGCGCCGGCTGATCGCCCGCCGGGGCGTCAGCAACGAGCAAGCCGAACAGGCCATTCCCGACACCGCCGCCGAAAGGCTGGAACTGCCCTATGTCGTACTGGCGAGCCGAAGCACCGGCCAACAATTCCGCCTGTTCGTGGAACATCGTCCCGTGCAGGAGCAAGCCGTGAGCGGCACCTTCAGCGCCTACGGCCTGAGCGCCACAGCAACGGTGCCCTGGTTCTGACTTTTTTTCGCACCCTAGAAAATAGCCATATTAAATCAAATAGTTGCAAACCGTCCTGAAATTTTGGTTTTGGGCCGGGATTTGGAGCTTTTTCTTTAACAATCAGTCAACTAAAAGCTTTACGTTCTA # Right flank : ATCCCCGACGGCGTGACACTGCCGGAGCTGTGAATGGCGCTGAAAAACCGCGCATAGATGGCGACGAACGCATCCCAAGCCCGCTTCAGTCCTGATCGGAGGATGGATCGGGATGTGAAGACGTAGGGGGAAAGATGGCGCGGAAAGAGGGTGTGCGGTAAAAAGCGCCCTGCCGAAGAGACTTGGGTCGCGCCACGGCTCTCAACCGCCAAGTTTCGCTCCGTGACGCGCCCCACCCCTCCCTCGTGAGAGGGAATGCCCTGTCATTTTCCAAGGTCCGAACAATCCCGTCCAGACCGACGCTCCTCGGCGTGATGACCAACGCCAATGGAGTCTTCGGGTCGTTTCTTTGTCTGCGGGCGCTGCCGCGTCCAAGTTCTGCTGTGCAGCCACTGCGACCGGGGCCAGATCTATTGTGGCGACGGTTGCTCGAAGGTGGCGCGTCGCCGCTCCCTGCGGGAGGCCGGTCGGCGCTATCAACGCAGTCGTCCCGGTCGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 3527661-3526925 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3527660 36 100.0 34 .................................... CGATGTACTGTCCCACGATTGCACTATCCCCTGG 3527590 36 100.0 34 .................................... TCCGCAGCGGCAATCCTTTATGCCGCATAAGAGT 3527520 36 100.0 33 .................................... TAAACTGCGGCCTGAATCTCGAACCAGGCTTCT 3527451 36 100.0 35 .................................... CGCGGCCGCGCCGTCGACGTCGACGAGCAGCTTGG 3527380 36 100.0 34 .................................... ATGATCGCCGAAATGCTTGGCGACGTAGCCGTTG 3527310 36 100.0 34 .................................... CTCGCTTTGGCGGCGGCGGTTGGATGTGCCTGGC 3527240 36 100.0 35 .................................... CAAGATTTTTTTCATCTGGCTGCGAATCAACTGTT 3527169 36 100.0 33 .................................... AACACCGCAGTCGCATAGCCAGGCCAGTAAACT 3527100 36 100.0 34 .................................... CCGGCGCGGGTTCGTGGCCTGGCCAAACGGGCCG 3527030 36 100.0 34 .................................... GCGACATCATGCCCGGCTGCTACAAACTCAGCGC 3526960 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 100.0 34 GTTGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Left flank : TGATAGAAACGGTTTGAACGTGGCCCAAAACCTCCCCCGGCTCCACATCATCAGCTATGACATCGCCGATCCCCGCCGTCTGACCCGTCTGCACCGCTATCTCAGCGGTCTGGGCGTACCCTTGCAGTATTCGGTATTCGTCGCCGAACTCTCACCGCGCAAACGGGCGCGCATGCTCGAAACCATCGGCGAAATCATCGATCCGCGCCGCGACGACGTCCGCGTTTATCCCTTTCCCCTGCATGGCGAACGCATCCGGCTCGGACGCCAGAGCTTTCCCGAGGGCGTCTTCCTCATCGACCGCGGCTGCGACCTGCTTTCCCTGAGCAAATCCTGACCGCCCGTCTTGCCCGGATTTCGCACCGATGGTTTACTACACACGGAACGGACGTCATGACATACGCAGGAAAGCCACCCTCCGGGGAGTCAGCTTTTTGAACCGGCGATTTTTCTTCAACCCCCTTTGCAAGCCATTGAATGGCAAGGAGAAAAAAGACGAA # Right flank : AACAGAGGCAACAGCTCAGGTAGGGTGGATAAGCGTAGCGCATCCACCTCCGCGCCGACTCGAAGAGCAGCGAAGCTGACTCGGAGAGCAGCGAAGCTGACTCGGAGAGCAGCGAAGCTGACTCGGAGAGCAGCGAAGCTGAATTTGGCGGATGCGCTGCCGCTTATCCGCCCTACGATCCTCCATGAAGGAGCACAAGGAAGTCGAGCGAAGCGAGCGAGTGCGACGACCCCCGCGAAGCCGTAGGCCCGGATGTTTTGTCGGAGTCCGCGGCTTCATCGCGGGCGGAGACAAAACATAAGGGAACCGACACGGCGTCGAGTCATTGTGGGAGCCTTGGCGGAGTGCGTCGCTTAAGAGACGGACGAAGCCGAGGCGGACGCAGGACGGCGCGGGCCGCCGAAGGCAAAGACGTCGCCACAATTTGCTCCCGAGGGTGACTGGGATGTCCCGTCGGGTTTCGCAAAAAATGGCGACGCTCCAGTTTCTTTTTCAAGACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 6 3556190-3553031 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079095.1 Methylococcus sp. Mc7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3556189 36 100.0 34 .................................... AATAATCCCCAAAAAAAGTTAATTAAAAATCTGG 3556119 36 100.0 34 .................................... TTCCTTTCATAAACAAATATAACCTTCTCCATTC 3556049 36 100.0 34 .................................... GATCTCCTTGGACCTGTTTTAACAGTTCAACTGG 3555979 36 100.0 33 .................................... CCAATCGCCTCGCCCAATGCGCTGAACTATGGC 3555910 36 100.0 34 .................................... ACCGTCTTGATGCGGTTATCGCTCTGATTGATGA 3555840 36 100.0 34 .................................... CGCAAGGCCGGCTTATGGTTGATCATAAGCAAGA 3555770 36 100.0 35 .................................... GCATTGGTGCGGGTTCGCACCAACGTACCGTGAAA 3555699 36 100.0 33 .................................... TCTATGTTCATGACCATCTCCTCATCAGCAAAC 3555630 36 100.0 33 .................................... ACGATTTCGCGTTGGCAAAAGTCATTTTTCTCA 3555561 36 100.0 34 .................................... GTCCCACGATTGCCCTATCTCCACTGCGGAGTGA 3555491 36 100.0 35 .................................... GCATTGGTGCGGGTTCGCACCAACGTACCGTGAAA 3555420 36 100.0 33 .................................... CGCCCAGGCATGCTGGGGTACTCCGTAACGATC 3555351 36 100.0 34 .................................... GGGAACTCGGCCAGCATGTTGGCCGAGAATGAGT 3555281 36 100.0 33 .................................... ACCCGCACCAACGTACCGTGAAATCTGTTGGTT 3555212 36 100.0 33 .................................... CACCATTCTGGTAGAACAATCCGGTCGGCAGCC 3555143 36 100.0 33 .................................... ATGACGTTTACGGCGATCGAGTCGATGGTTTTC 3555074 36 100.0 35 .................................... GCCAATACTCCATTCCTGAATCATCCCATCCATGG 3555003 36 100.0 32 .................................... GGTCGAACCGGTCCAGCCAGGCCAACACATCC 3554935 36 100.0 35 .................................... TATTGGGTACTTTCATAATGGATGACATTTCCATT 3554864 36 100.0 32 .................................... CCGCTTCCCACGGGGAAGTCGCTATTGTTTCA 3554796 36 100.0 33 .................................... CCGCCCAGGCATGCTGGGGTACTCCGTAATTGT 3554727 36 100.0 33 .................................... TCCGGTGTCAGTCTCACTGACACCACCACGGTT 3554658 36 100.0 34 .................................... GTACACCTCCCCGCGGAATTTCACTTCCGCGGAG 3554588 36 100.0 32 .................................... TCCCGGACACAGCTATATATACGCCAATCAAT 3554520 36 100.0 32 .................................... TGTCCGGCTGTCCCGGACACAGCTATATATAC 3554452 36 100.0 33 .................................... GACGCAGGGACTCTGGGTGTGTAACGTACGGTC 3554383 36 100.0 34 .................................... AGGTCATTTTTCTCATTTTTGTACCCTCCTTTGG 3554313 36 100.0 33 .................................... GGCACGAAGACCGCGGGCGTATTCCAGGCGAAC 3554244 36 100.0 33 .................................... GGCACAATCCCGCCTAAATTTGGCGTGAGCTGG 3554175 36 100.0 32 .................................... ATCCCTGCTCGAGCAGGATCTCGCGCTCTTCC 3554107 36 100.0 33 .................................... ATCCCGCCTAAATTTGGCGTGAGCTGGGGTTCC 3554038 36 100.0 34 .................................... ATTACGCGGGGCTTGAAGGTGGGACGGGGTGCAG 3553968 36 100.0 33 .................................... CGTGCGGCCCGCCCCACCCACGGGGATGGGGAG 3553899 36 100.0 33 .................................... CAACGCTTTCGCATTGGCATAGGTCATTTTTTT 3553830 36 100.0 33 .................................... GCCGCATTGGTGCGAACCCGCACCGCCGTGCGG 3553761 36 100.0 32 .................................... CACAGCATCGCCAACATTTCGAGTTTTTCCAC 3553693 36 100.0 32 .................................... GCTTCAAGCGCGGCGATATCCACAATTTCAGA 3553625 36 100.0 33 .................................... TCTTGCTGTGCTGCGTTCATGACTGCTCCTCTT 3553556 36 100.0 34 .................................... CTTCTGCAAAGAACAGTTCGGTATCCTTACCTTC 3553486 36 100.0 35 .................................... ACAACAAAAGATGCCGTCTTGTGATGAGTATTACT 3553415 36 100.0 34 .................................... TACTATCAAATTCCCATTTTGATCATAGGTATAC 3553345 36 100.0 34 .................................... ACTCCGTGGATTACATTTCCTTTATCGTCATGCT 3553275 36 100.0 35 .................................... ATTGGCTCTATCAGTGGAAGGCGTTCGAGGGCGTA 3553204 36 100.0 34 .................................... CGAACGCGCAGAGCAAACCAATCAGAACGAATAA 3553134 36 100.0 32 .................................... CTGTATGTGCGGACTATTACGAACTTTTCTTC 3553066 36 97.2 0 ........A........................... | ========== ====== ====== ====== ==================================== =================================== ================== 46 36 99.9 33 GTAGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Left flank : GACACCCCCGACAAGGAAAAGACCCTACGCAGCGTCATCGCCACCCTGCAAGACCTCCAGTTCGTCATCGACAAGGCCGACCTGACCGTCGGCGTGGTCAGCGGCACCAAACTGTCCGGCTACCAGCTCAAGATGACCGTCACCGTACATCCACGCGGCGACAAGCAAATGGTGGTGCGGGCCAACGCCCAGTACAACACCACCCCCGTCACCGACCCGGAACCCTACCAGCAGTTCTTCGCCGCCCTGCAAAAAGCCATGTTCCTCACGGCGCACGACGTCGACTGAGTTCCGAGGCGTGCCGTGAGCGGCCCCGAAGGGCTTGGGCAGGGGCTTGCCCGACGCCAGCCCGGATGCTTAACTACCCAAGACCGGCGCCAGCGAACCCCTTGTTGGTGCCGGTTGGCACACGCCTTGGGAGAGTCGGCTTTTGGAGCCGGCAATTTTTCTTCAACCCCCTTTGCAAGCCATTGAGTGGCAAGGAGAAAAAAGACGAAGCA # Right flank : GGGCGGCGGAGTGCAGCGCCGAGGCCGAAGCGCTGGGCCGCTCGCGGGGCGGGTTCGGCACCCAGATCCACGCCATCACCGACGCCCCGGGCAACTCGCTGGACTTCGTGCTGACGGGCGGGCAGGCCGAAACGCTGCTGGGGCTGACGCCGGAAGGGACCAAAGACTTTACCGGCGATAAGGGCTACGACAGCGACGCCCCTCGTCCAGGCCATCGACGTGCGAGGCATGGAAGCCTTCATCCCGCCCCACAGCAACCGCACGCAGCCGCGCAAGGTCGATTGGTTCGTCTACAAGGAGCGCCCCCTGATCGCATGCTTCTTCAACGGATCAAACGCTACCGCAGGATTTTCTCTCCCTATGAGAAGACCGCCCCCAACTACATGGGTATGCTGCGATTCGTCTCTGCCCTCATCTGGCTGCGTTGATACGTCAACAGAACCTAGCACGGAAGGGTGCAAGCCCTTCGACTACCTGCAGCGGGTCGCACGCAGCCGCGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTAATCGAGACCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //