Array 1 206721-208212 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQW01000013.1 Treponema sp. J25 NG-7853_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================================== ================== 206721 29 100.0 36 ............................. AAAGCGTCACGGAGAACAAGAAACTCTGCCAGTTCT 206786 29 100.0 36 ............................. GGATAATCCTTCTTTTTCTAGAATACGTGGTGGATA 206851 29 100.0 36 ............................. ATTATCGCTCCAAAGCCGCCTACTCCCGCTACTACA 206916 29 100.0 36 ............................. GTTCTTATACACATTGTATACTAAGTTCCAAGATAT 206981 29 100.0 36 ............................. CGTTGTTTGTTCTAGCCAGTTCGTACAACGCTTCAG 207046 29 100.0 37 ............................. TATTTTCCAGCAAGTTCAAAAATTCTTATTATTGCAC 207112 29 100.0 36 ............................. CCGTCTCTAGGCATATAGATTTTGCCGTTGTAAAGA 207177 29 100.0 35 ............................. CAAAGTATGGCCATCTTCCTGCGGACTTTGACCAC 207241 29 100.0 36 ............................. TCAGACGCTGCGCAGGCGGTAATGGTAGCATCTACA 207306 29 100.0 36 ............................. GTCTACAAATGTGTCACCAGCAAAAACCGTAATAAG 207371 29 100.0 37 ............................. CATGGATGGTTAGGGGAGCTGTGGATTATTTTAAAGA 207437 29 100.0 36 ............................. TAAACTCTTGTGTTGCAGGATGATTTAAATCATGTT 207502 29 100.0 36 ............................. AGACCGACCCTCGTTTTATTGCATTCGGAAGGATGT 207567 29 100.0 36 ............................. TAATTTTTCCATGATAAAATCGAAATGGTTTTTCAG 207632 29 100.0 36 ............................. CCCTTGAAATTCGCTCGCTGTTACTTTTGAAAAAGT 207697 29 100.0 36 ............................. TCGAGGAGCAAAAGGATTAGTAAATAAACAATCTCT 207762 29 100.0 36 ............................. CCGGAGGTAGTCTCTGAAGTCTTTTCCATCATCCCT 207827 29 100.0 69 ............................. CTTTTTATTCCAAAACTTATTGTATAAGAACTATAACTTTAAATCCCATATTTNNNNNNNNNNNNNNNN 207925 29 65.5 36 NNNNNNNNNN................... CTGGACAGCATCAGCCCCAGTATCTACCTCAATACT 207990 29 100.0 36 ............................. GTGAACTTGAATCACTTTTAGAATTGCAGAACAGGA 208055 29 100.0 35 ............................. CAGATGGCTATAGGTTTACCGTATTACGATTTTGA 208119 29 100.0 36 ............................. GGAAGATTTTACTATCTGGTTCTTGCAAACCTACGG 208184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================================================== ================== 23 29 98.5 38 CTTTAAATCCCATATTTGGCTGCTAAAAC # Left flank : TCTGCCCAAACCCGCTTTGGGGGTGGAATTCTTTCCGAAGCTTTTTCATAGAGACGTTTTCCGAAGTGACGCGGCCCGCTTCATCTTCATAAATACCCCGCACGGTGGTGCGGCAGTTGAAGTGAAATGGCGGCCAGTGGTCTTCCCAGAATGGATGGTCATAGGGGAGCACAAGCCCGGCAAGGGGTCGGCAAATATCGCTCGTACGCTCATCTTCGAGCACCATAAGGGCAAGCGCTGCGGGAGGAGAGCGGTCAAACTGCATCCGGCGCCCGGCGTTGTAGGATGTCTGGATATTGGTTCGATACACCGTTTCCCAGTAGCCAGGTTTGATGGTCGCCCCATCCGATTCGGCGATTCCCTTTATATCGTTCCAGAGCTGTTCAAAGCCTTCCCCTTTCTCTAGGGCCGTGACAAGCCGGCCACGGACCGCTTCGATGTAGTCGCACTGGGTAAGTTTTGCCAAAGTGAAGGCACGGAAGGCAAGCTTTGGCTCCAGA # Right flank : CCCGTCACAAAAACGGGGGCTTTTCTTTATTTTGAAATAAAATATACGTAGAGATTGGCCGAAAATCAAGTATAATTTTCTCGAAGCGGCGGTAATGCTATAGAATGTTCGCCGTGGGATCAAAGTCCAGCCCTATGTTTTCTCTTCTGAGATTGTTTTTATTGTCTAACCTGTAAAAAACCACATAATCTTCTTTATCATTTATAATCCGTTCAATCGAGGTTTTTAAAGCAGTAAAATTTGCTTCTGTTATTTCTCCTTCAAAAACAGATTTCTGGGTGTGGTGAAGATATTCACGGCATTTTTTCATAACCTTTGGGAGTCTCTTTCTCCCTTCTTTTGTTTCTGTCGAAATATCATACACAAGAATTACGTACATGGATTACCACCATACCCTAAAAGATTTGTATGTTGTCTCGCCAATGACGTGTTTAATTAACTTGTATAACTCAAGTCGTATGATTTTCTGGTAACTTACTTTTCTTTTTAATTTCTTGTGA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAATCCCATATTTGGCTGCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.70,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 150092-147154 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTQW01000010.1 Treponema sp. J25 NG-7853_contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 150091 33 100.0 35 ................................. TGATGAGAAAAAATGTGTATATATAGAGGCAGAAG 150023 33 100.0 35 ................................. AAAAAGAAATCACATAAAAAAGAGTGTCAGTTTGG 149955 33 100.0 35 ................................. CAGCATACCGGTAAATACTGGATGGAAGAAAAAAT 149887 33 100.0 35 ................................. CTTGTCTGGGAGCGAATTTATAATTTTGATTTCAT 149819 33 100.0 35 ................................. ACATCATTATAATAACACGCCATTACAATCTTGTA 149751 33 100.0 34 ................................. TCCAAAAGTAAGTAGGACCGTTCGATTTTGTACC 149684 33 100.0 34 ................................. TCCTCTGAGTCTGTATTACGGATACTTCGTCCAC 149617 33 100.0 36 ................................. CCGTATAACTTTTTTAAATTCCTCGAATGGCTCCAT 149548 33 100.0 34 ................................. TGTAAGGGCTTACCGCCTATACATCGGACCGGTT 149481 33 100.0 36 ................................. TGCCCTCCATAATATTTTTCTAGGGCCTCCGCCCAA 149412 33 100.0 35 ................................. ATAAGTCGGTCTATCTCGTTTGCCATATTCCCAGC 149344 33 100.0 34 ................................. TTATCCTGAGAACCGCCATTACCATACCAGCCCG 149277 33 100.0 34 ................................. CCCCTGTATCCGGTACTAAGTACCGGATAATCCT 149210 33 100.0 34 ................................. ATCGCAATGAAGTACCCCTTATCTACTTAATATA 149143 33 100.0 33 ................................. AGGATTATCCGGTATACCGGATAAGGAGGGAAT 149077 33 100.0 34 ................................. ATAGATAATTGAGGAGAGATAATTATGAGAGGAC 149010 33 100.0 33 ................................. TATTAACACCAAAAATATAGCCACAATACTATT 148944 33 100.0 36 ................................. ATCCATGCTGATTGCCTGCCGGTTAAATGGAACCGG 148875 33 100.0 36 ................................. TGTCCGGTATACCGGATAAGGAGGGAATTATGACTA 148806 33 100.0 34 ................................. TTTGTAAAATGTATTGACAAGATAATAATATTAT 148739 33 100.0 35 ................................. TCTTCCAAGGCCCGTACGTTACCGTTGTAGCTCCT 148671 33 100.0 34 ................................. AGGCTGAATATGTACGCTTGCCCGATGTCGTCGA 148604 33 100.0 35 ................................. ATTGCAATCGATAATCGCCACACAAAGCCCTTCAT 148536 33 100.0 35 ................................. CCCAATTACCATTGATATCACGTATGCGCTGGACG 148468 33 100.0 34 ................................. ATACAGTTTTTGCTATATAGCAAAAATTGAATGT 148401 33 100.0 35 ................................. AGTCTATAATCGTCGAACAATTTTTTCGAGAACAT 148333 33 100.0 35 ................................. TATCACTCTAGGAGTGGTACAAAGTACCTGCTACA 148265 33 100.0 35 ................................. TACGGTCTCTTGTACCGTATTTTCTAAAACCCAGT 148197 33 100.0 33 ................................. CTATACAGCAACTCCAAATTTCCGGGGCGCCCT 148131 33 100.0 35 ................................. ATCTAGGCTTACATAGCCTAAACTTGCGAGTCGAA 148063 33 100.0 35 ................................. GAGTATTAAGCAAGCGAGGCCCCAGCAATCGCATC 147995 33 100.0 34 ................................. GGGAGTATCCTCCGATACATCCCCAGTCATTGCC 147928 33 100.0 35 ................................. CCGAACTGAAAACCCCTGTCATGGACCTCCTGTAC 147860 33 100.0 35 ................................. GAGTATTAAGCAAGCGAGGCCCCAGCAATCGCATC 147792 33 100.0 34 ................................. TGGTCGTCCTCATTATCATACGATATTGTTAGGT 147725 33 100.0 34 ................................. ATCCTCGTCCGGGAGATCTCGTATAAGAGACCTA 147658 33 100.0 37 ................................. GATGTCTATAAAGAAGGCTAATGCTGACGTGCAGGCT 147588 33 100.0 34 ................................. TACTTACATGCCGGCAACGGCAAATATGCCTAGA 147521 33 100.0 33 ................................. TTTATATCCATACTCCTGCTCCATAAGCTTTAT 147455 33 100.0 35 ................................. TTAACGAAGTATCGAGGCAGCGAAAAAGACCTACC 147387 33 100.0 34 ................................. TGATGAACGTGCTCAAATCTAAGCGTTAGGAGGT 147320 33 97.0 34 ............T.................... GCCTTAGCTTCAAAGCCAGGCTCAGAATCCACCT 147253 33 97.0 34 ............T.................... ACAGCGATGATGTTTGGGGCGGGGCACCGGAGGT 147186 33 97.0 0 ............T.................... | ========== ====== ====== ====== ================================= ===================================== ================== 44 33 99.8 35 GTCGCTCCCCTCGCGGGGGGCGTGGATTGAAAC # Left flank : AATTTATGATGGTTTTAATTACTTACGATGTAAACACAGAAACCCCAGAAGGTAAAAAAAGATTACGACAAGTTGCAAAGGTATGTCAAAATTACGGACAACGGGTACAACATTCCGTTTTTGAATGCGTAATTGATGGGATTATCCTCCGGAAGATACAATACCAACTTGAGAAAATCATCAATAAACAAACTGACAGTATTCGTTATTATTATATGGGAGAAAACTGGAAATATAAAGTTGAACATATAGGTGTTAACCATAATTTTGATATAGAAGGACCTCTTCTATTCTAATCCTCTTTAACTTTATTGTTCTTTGAAACTATAGGGAAGGAATATTTGCGAACCAGGAGTGAACAGAGAAAGGCCAGCAGTTTCGCACAAATAAAGATTATTTTTTACATTAAAAATTGGAGATAATGGAAAAATAAACAGATATACATGAGATATAGTTGCACATATAGTAGTATAAGTGTATAAAATACACTGTATTTTGCG # Right flank : CGTCACAGTCCGCACAAGCGGATAGGGTTTGCATGTGGTTCCGCTGTGGGGGCCTTTCGAGCAGAAAAACATTTCTTTACTCATATATGTAACACAATATCCAGAAGGAATTCTATGAATAAATGGATTAGTATATTGATCGTAAATTTTTTAGTCTGTGTAGGAATATATGCAGAGGGATTTGGCTTTAATCAGTTTGAATACGAACCTGATCCTGCACCTACGATTGATCTAAGTCGAGCCCTTTCATTGAGTCCGGAAAAATTGACTATCAATAGGAAAAAACTTAAAGTAGAAATGTTTTATGAGAAAGTGTATGACAAAGACCGATGGGTTGATGTTTTATAGTACTAATAAAGCAAAAACAAAATATGAGGTGTTTATAGTAACCGTAGGAGAAAGGGGTATAGCTAAAATTGCCCTTGAAGATTTTAAAGTATTCAGAGATTCTGTTGGAGAAACCCCTAATTTTATTACAGAGGAAAAAGAATATGGCTCTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCTCGCGGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //