Array 1 2335522-2333605 **** Predicted by CRISPRDetect 2.4 *** >NC_015385.1 Treponema succinifaciens DSM 2489, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ============================================= ================== 2335521 34 100.0 45 .................................. CGAAAGACACATTCAGTGCCATCATCTTCCTCCGCGAACTGGGCG 2335442 34 97.1 45 A................................. CGAATCTACAAAATGTATATTCTTGCTATCATTCAACACGACAAG 2335363 34 100.0 42 .................................. CTCTTGAAAGAGAAATCTGATATACTGGGAATGCCATAATCA 2335287 34 100.0 38 .................................. ACTGCAAATAAGCGTCATGCTCCTTCTTATTCATCAAA 2335215 34 100.0 41 .................................. ATTCAACTTTTCATTCATATTATACTCCTTGCCTCCCATAA 2335140 34 100.0 42 .................................. AGTAGGCGTCGTGCTCCTTCTTATTCATGAGGCTTGTCCCGC 2335064 34 100.0 43 .................................. TTGCTTTCCGCAACAGGCTTTGTCTCTCTATTAAGAGATATGA 2334987 34 100.0 40 .................................. TCAAACTCCGGCTCAACAAGGTCAAAGCGCGCTTTACCTT 2334913 34 100.0 41 .................................. TTACTTTTGTCAGCTCATCCTTTGATGTCCCTGTCGTTTTA 2334838 34 100.0 40 .................................. ATCAAATTTTCCCAATCACTTATACGGTGAGCGACTAAAA 2334764 34 100.0 41 .................................. CCGCTTTTATGCGGCATAGCAATCAAAGTTGATTTTCCTGT 2334689 34 100.0 40 .................................. ATTTTTATATCTCTTGTCGAGTTTGCGCCTCTTGCTTTCT 2334615 34 100.0 41 .................................. ATGAAGACAGAGATAGTTAAAAATCTGCGGTTCGGTTCTTT 2334540 34 100.0 41 .................................. TCACGAACTGGAGTAAGAGTCCCAAGGCAATACTGGTCTTG 2334465 34 100.0 44 .................................. CAATAATACCCTAAAGGGAACCTTTCCCCTTTCTAAGTTGAAAA 2334387 34 100.0 39 .................................. CATCTTCTTACCTCCGAAAATCTTTATATTATGAATATA 2334314 34 100.0 44 .................................. CAGCCGGTCTGATACATGACCTTGAAATTTCAAAGCCTTGTCAA 2334236 34 100.0 40 .................................. ATTTTTATATCTCTTGTCGAGTTTGCGCCTCTTGCTTTCT 2334162 34 100.0 41 .................................. ATGAAGACAGAGATAGTTAAAAATCTGCGGTTCGGTTCTTT 2334087 34 100.0 41 .................................. TCACGAACTGGAGTAAGAGTCCCAAGGCAATACTGGTCTTG 2334012 33 97.1 44 .........................-........ CAATAATACCCTAAAGGGAACCTTTCCCCTTTCTAAGTTGAAAA 2333935 34 100.0 39 .................................. CATCTTCTTACCTCCGAAAATCTTTATATTATGAATATA 2333862 34 100.0 44 .................................. CAGCCGGTCTGATACATGACCTTGAAATTTCAAAGCCTTGTCAA 2333784 34 100.0 37 .................................. GTCTCTTGAGAGACTGATATTGTATGTTGGGAATGCA 2333713 34 100.0 41 .................................. TCGTCGTTAAGAACGACAACCTTTAGCTCTGGAAGAGCCCA 2333638 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ============================================= ================== 26 34 99.8 41 TTAAAAACATAGACCTGATTTAAGGGATTAAGAC # Left flank : ACGGCTTGCAAAAATCTCAAAGTGCGTTGAAAGCTACGGCTGGCGGGTGCAAAAGTCTGTCTTTGAAAGCACTGCAAGCGATGAGACAATCGGGCAGCTTAAAAGCCGGCTTGAAAAACTGATGGATATTGAGGAAGATTTTGTACTTTTTTTTGAAGTATGCGAGCGTGATTTTCAGAAAAAGCAGATTTTCGGCAAAAATATTGAGAAGGACGATAAAATAACAGATGAGGATTTTGTGATTCTATGATAAAATATTCGGGCGTGCAGATTCGCTCTTTGACATAAAATCGCAGACTTCCGTTTTTATAAAAATCTGCCAAAAAAGGCTCAGGTTTGCGAATAAAATATAAATATTTATGATACAAGGATTTAGAATGATTAAAAAGACTGAAAATATACTTTTTGCAATAAAAATGCACGGAATTGCAGCAAACATAAATGGCCTCTGCGAAACACCTGTTGCAATTCCTTGCAATAAAAGATATTGTGAGCGGTAG # Right flank : ACAAAATCTGTAGTCATTTGGTATTGCAGGGCAAACGCATGTAAAAATTTTTTGTTTTAAATCTCTAAACTACTATTTAAAAAATGCACAAAATGGTAAAATTCCCCTTGGGTGGAATTATGCTTTTAAGAGAAAGTCTGGAAGAAATAGACGATTTTAGAGTAAAAAGGTGCAGGAAGTTTGAACTGGCTGATATTTTCCTGCTGGTTTTGTTCGGGCTGCTAAGCGGCATCAAGGACATTGAGCACATAGCTGAATGGGCGGAGGAAGCGGAAGAGTCCATCAAGGGGCTGGTGAAGTTTGAGTTCGGTCCGCCAAGTGCCGACACAATTCTCCGGGTTTTCAGAAATGTGAACGCAGATAAAATCGAGAAAGTTTTTATAAAGTGGGCTCATGGAATTTACGAGAAAGTAAAAATTGAACCGGACAGAACAATTGTTGCCATCGACGGAAAGACGATGTGCGGCTCAAACAAGGTCACGGGAGCAAAGGGAATTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAAAACATAGACCTGATTTAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //