Array 1 408-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWH010000024.1 Streptococcus thermophilus strain 252 NODE_36_length_10677_cov_82.918491, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 407 36 100.0 29 .................................... CTCCTGTCTTATTTCTTCCTGTGCCACTG 342 36 100.0 30 .................................... CAAACGGACTAGCACCATTCATGGCAAAAG 276 36 100.0 31 .................................... CTAGATGTCGTAAAGAACGTGGCATCTAATT 209 36 100.0 30 .................................... CCCTATCTTGAAAACTATCTTAGCATACGT 143 36 100.0 30 .................................... GTTAATTGAAGTAACAAGATAATCTTGGTT 77 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATAGCTTTGTCTCAGAGGAATCTTATACTATTTTTTATAAGCAAATTGGTCGGCTAGTCAAAAAGTATCCAAACCTAAACTTTATTTTGTTTCCTAGTGATCAAGGCTATTTAAAGATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGTGTAGCGAAACATTATCCAAGCAATAATTTTCCAAGGAGAGAGGAGTTTAGGATGTCTTTAGAGACTGTGACGCCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : CGTGGGAGGCCATTGATATTATTATATTATAGTTTTTGTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 49483-48919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWH010000068.1 Streptococcus thermophilus strain 252 NODE_15_length_49523_cov_82.005865, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 49482 36 100.0 30 .................................... GTGGGAGGCCATTGATATTATTATATTATA 49416 36 100.0 30 .................................... AAGAAGGAAATGATAATTTAAGACTACCCT 49350 36 100.0 31 .................................... ACAGATAGAATTAGAGATAAAAATAAAATAG 49283 36 100.0 30 .................................... CAGATCTTATTCAACCAGTCGTGCAAACAG 49217 36 100.0 30 .................................... TAGAGGATGCGGTGAAAGAGGGCGAGAAAG 49151 36 100.0 31 .................................... CTGTGGGAGTGAGTTTAGAGAAATCTGCATT 49084 36 100.0 28 .................................... GTTGCTAATGAGAGGGCTTCAACCGCCT 49020 36 100.0 30 .................................... ATGTTTTGTTATTTGTGAAATCAACGTATT 48954 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : AACTGTACAACGTGGGAGGCCATTGATATTATTATATTAT # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 16618-16798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWH010000074.1 Streptococcus thermophilus strain 252 NODE_4_length_92518_cov_79.814606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 16618 37 100.0 35 ..................................... CTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 16690 37 100.0 35 ..................................... GTCATGATATTTATTGTCTGCTGAATGATTTGATA 16762 37 83.8 0 ..............................TTTTTT. | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 94.6 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAACG # Left flank : GTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCCTTTAATCATATGGTACAATATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTGGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGCAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 5.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 51495-50139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIWH010000001.1 Streptococcus thermophilus strain 252 NODE_5_length_91890_cov_93.210842, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 51494 36 100.0 30 .................................... TCGTCTTCTTTAACATTTTCTAATAAATAT 51428 36 100.0 30 .................................... TTTAGCAACAGAAAGCCCACCAGACAATCA 51362 36 100.0 30 .................................... AAAGAGGCCTAAGTTAGAAAGAGGGAATAT 51296 36 100.0 31 .................................... CTAGATGTGTAAATGTCTATTTCAGTTTCAC 51229 36 100.0 30 .................................... TCAGATTCAATTTCATACCTTTTCGAATAG 51163 36 100.0 30 .................................... AGTCTCTGACCGTTGGCTTGCTAATGGTAC 51097 36 100.0 30 .................................... ATACTTGTCTGAACCATTCAGCATTGGCAC 51031 36 100.0 30 .................................... GAATCACGATTGGTTTATATGTGGTCTTCA 50965 36 100.0 30 .................................... TCTATTTAGACTAGATACGAGCACAAACAA 50899 36 100.0 30 .................................... TTGGACGGTTTGATTCCACCCCAAGACGCT 50833 36 100.0 30 .................................... CTTGTCCAACTACTAAACTGAATACAAACA 50767 36 100.0 29 .................................... CCTAATACACTAGTATGTCCGTAAAGACC 50702 36 100.0 30 .................................... GTCTGTCTTAAGCTCTGGTGCTATCTCAAC 50636 36 100.0 30 .................................... ACACTCTTTCTTTCTTATCTTGATACTAGT 50570 36 100.0 30 .................................... TACTGGACTATGATACTAATAACACATTAT 50504 36 100.0 30 .................................... TGTGATGAACAAAGCTCCATAATCTAACTT 50438 36 100.0 30 .................................... TACAACAAATTCAGGCACTCATCTAATTTT 50372 36 100.0 30 .................................... TTCACTATCTGCATAAGCAAAGTGGACGTA 50306 36 100.0 30 .................................... AGAAGCAGTTAGAAGAGCTTCAAATTCAAC 50240 36 100.0 30 .................................... TTATTCGTTTTAACTCCATAACCGCTTTAT 50174 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCATATTTTTCTAATGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGAATATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAAAGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGTAGAGAAAAATGACCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGCACTCATCTTATCATAAAGGAGTCTAGTATTGAAGTGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTAAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTTGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTACTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATAAAAAAAAGCTTGTGTTTTGATGCAGGTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //