Array 1 373354-373203 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000001.1 Streptomyces microflavus strain JCM 4496 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 373353 29 100.0 32 ............................. GAGCTCCCGGCCGAGGGCGGGGACGCGCTCGG 373292 29 100.0 32 ............................. AGCTGAGTCGGGGGGTGGGTGCCGTTCTTCCC 373231 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Left flank : ACCAGGAGGCGGCCTCCAACGGCCAGTTCGCGGACCGCCGGTTCCGAACCAGCATCTGGGCACGCGCCGTGGCCGCAAGGCTCGTCTCCGGGCGGGGCGGGGAGATCGGGCGCTTGGGCGGGGGTGGGGTCTTCGGCGGATGGTCCGGGGTGTGATCCGACACGATGGCTCCCAGGATCGGCGCGGACATCCAGCGTAGGGCCGGGTGTTGTGGCCCATGGCTGCGATCGGCCATTCCTTCACCCGTACAGATCGGTGCTGTCCAGCGCCGTGTTCGGCGGGCGGTCGGAACACCGGATGACCGGCTGATCCACACCGGACCGGGGAGACGCGCGCGTCGGCCTACGTGGCGGCTGGTGCTAGCCGATGCGGGCGGCTCACTCGGCATCGGGCGGCCCATCTCAGGAGGACAGTTTTCGCTCTGTCACCATGTAAGGGTGAGAGACGCGCCCGTAGGTCAAGGAATGACAAAGACCCTATAAACGCGCAGGTCAGAAAGA # Right flank : GTGCCGGGGTCCAGGGCGGCCAGGAGCGGGAGGGGCGGGGGTGTTCCGGGAACGCGGCGCTTACCAGCTGCCCCCGGACACACGGCGGCCCCCACCAGCCGGTGGGGGCCGCTTTGCTCCCGCACACCCTCGGCCAGTTCGTACTTGAGCCGGTGATGCCGGTCCGTCTCCACAGCGGGCGACGGCGTCTTCCTCATCAGCTGCCAAGCGGTGTTCGTATTCGCCGGTATCTGCTGCATCAACTGTTTCCAGCCAACAGCCGCGCACCGGTTGGCGAACTTGATGTGGTACTCACACTTGGCCGGCGGGGGAGGCACGTCATCGTTCTTGCCTAAGCTCACTCATCCTCCGACGGGGACATGGGTACGTCTCCGAAGTCGCCCTCCCCGTGATCCTGGGTGAGGGTGGCATGCAGCTCGGGGTCGGCGTAGATCTCCGCCGTGTGCTTCCAAGCCGCGATCACCGTGGTGATCGGGGCCAGGCTACCGAGAGAGGTGCTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44098-41448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000018.1 Streptomyces microflavus strain JCM 4496 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 44097 33 93.9 28 .............................A..G CCCGCGACGACCACGGTTGGGGCAAGGC 44036 33 93.9 28 ..............................A.A TCGAGGAGTGCGCCCCGTGCCGCAAGGA 43975 33 97.0 28 ...............................T. CGGTGCACGTCTCGTTGGGGCTGAGGAG 43914 33 87.9 28 .............................GGGC GCCCACCAGCCCCGCCTGGGTCCGGATC 43853 33 93.9 28 ..............................GT. GACGATGCCGGGTCCGGCCCGCAGAGCC 43792 33 93.9 28 ..............................T.A ACCAGGCGTTGACGTCGCTGCGTGCGGC 43731 33 100.0 28 ................................. TGGCCAGCTTGCCCATGACCCGGTCCAT 43670 33 93.9 28 .............................TT.. GGGTGGCCACACCGCTGTCGTGTGGGTC 43609 33 93.9 28 ...............................GA GCCGCTGACCGTCCCCACCGAGTGGACC 43548 33 93.9 28 ..............................T.G GCAAAATGGTGTACTTCTGCGCCGATAT 43487 33 93.9 28 .............................G..C GGCGTACGGGCGCGGTGTGGCTGCCGTT 43426 33 97.0 28 ...............................T. CCGGTCCGCCCGCGGCTCTCAGGTGGTG 43365 33 87.9 28 .............................TGGA CCGGGTTCTCCTTCTTCTCGTAGGAGAC 43304 33 90.9 28 ..............................AGC AGGCAGAGGAGAGCGACGGGTGCACCTG 43243 33 93.9 28 ..............................T.A TCGTGACCGGTGGTGCGGAGCTGCTCGC 43182 33 97.0 28 ................................G CGACGCCCGCACTGGTGCCGAGGCAGAT 43121 33 93.9 28 ..............................G.G CCACCGCCGCCTGATCCACCACATGAAG 43060 33 93.9 28 .............................A..C TGGGCGGAGGATCCGAAGGTTGAGCCGT 42999 33 93.9 28 .............................A..A CCCGGTCTCTCGATGACGACACGGTCGA 42938 33 90.9 28 ..............................TGG TCCTGTGCGTCGGCCTCATCTACATGGC 42877 33 90.9 27 .............................AGG. CGCCGAGTTCCTCGGCCGGAAGGCCCC 42817 33 93.9 28 ..............................TG. TCTGGGCCAACCCGCGACTCCGCCGGTA 42756 33 90.9 28 .............................GG.G CACGGGGGATCATGTGGCAGGCGTATTG 42695 33 87.9 28 .............................AGGA CGAGTGGCAGTATCCGCCGTTCATTTTG 42634 33 87.9 28 ..........................G..GA.A TCGGCCCCCCGATCCAGGCGACCATGGC 42573 33 87.9 28 .............................GGGC CCGTCCCCACACAGGTTCTGCGGCTCAC 42512 33 87.9 28 .............................AAGG TCACCGCCGCGTCGGTCGCCGCGTACCT 42451 33 90.9 28 .............................TG.C GAGCAGCCAGACGCAGGGGCGCCGGACC 42390 32 87.9 28 .................-...........T.GG TCGCGGTGCTCACGCGGCCTGGTCCTCT 42330 33 100.0 28 ................................. GTGCGGCGGACGCCCGGTAGCCGACCAT 42269 33 93.9 28 .............................T..G TCGGCGGCGCCTGGTACGGGCAAGCCAC 42208 33 90.9 28 ..............................TGG CAGCATCCGCCCAGCTCACGATCGGCGC 42147 33 93.9 28 .............................G..C ACGCCTCGGGGACACCAGTCCGTCTCAC 42086 33 87.9 28 .............................AAGG CGGCCGGTGTCGACCTCCCGCGCACGTC 42025 33 87.9 28 ..........T..................GAA. TCCAGATCCGCACGACGGACGGGAGCGA 41964 33 90.9 28 .............................TT.C CGACGTGGTGCAGGAGCAGGAGGATGTC 41903 33 90.9 28 .............................TA.A TCAAGGAAATGTCGGCCGCCCTGCGTGG 41842 33 84.8 28 ..........................A..GAGA TCGCGGACCGCCTGGCCCCGTACCTGCC 41781 33 90.9 28 .............................G.GG CGCGGCCGAGTCCGCGGCTGGCGTCACG 41720 33 90.9 28 .............................AT.C TCGGGGCCGTCGCCCTCGTACTCACCAT 41659 32 87.9 28 .....................-.......TG.C CCCACGTGATGCCGGTACGGCTCTGGCC 41599 33 81.8 24 ......................CCC....GGG. CCGGCCATGCCGTCGTCCTCCTCC A [41573] 41541 33 84.8 28 ............A.....A.....C.....T.A CCAGGGAAGGCGCTCGGCGCGGGTGGTG 41480 33 75.8 0 AC......T..G.......A..........TGC | ========== ====== ====== ====== ================================= ============================ ================== 44 33 91.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCT # Left flank : GGCCAGCGCACAGGCCGACGAGCGCCCGAGCGCGATCCGGTTCCCCGACCAAGCCCATCCCGTCGGCTATACGCGCCCTCTGGTTGCCCGCCAGATAAACGTCCCACAAGTGGAGCGCCATCGCGGCCGCGTCGAGAAGATGCCTCACCAGCGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGCCTTTCCCCACACCGACTCATCCACCACGCTCCGCCTATGCAGCACGCCAGCCCTCTCCGCTCCACCACTCGAACCTGATCTGGCAACGGAAGCGAACCCGCCACCCATTGCATACAAGCACCCGGCACTGACATTGATGTCGCTACTCGCGTACCGACGGCGTTCCTCGCTCAGTAACGTGGCTCGGCGCTCGCTGGGCGGCCTTGCAAGCTGCAGCTGGATAGAGTGACGGCATGCGTCTGACCGAGCGCCTCACCCCCTCAAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGGTCAGGAAGT # Right flank : GCGGGAGGCAGTCGTCCCAGCCCTTGCCGTCGTTCCCGCCGACACGGCGCCAAGCCGGTCCCGGAGCGACCCGCCAGCTCGCCGCCGCCACGGGCCGACCGTCAGGGGTGCACTCCGTGCCGACCAAGATCCGGGCCATACGCGGACCAGCCGCCTACGGCTTGGCCGCGTAGTGGCCATTTCCGCTGGTGAGGGGACCATGGGAGGCGTGTACCACCAGCAGACGAAGAACCTAGTGGCACTCTGCGCAGGTGGCTGAGTGGGACCGCTCAGCACCACGAAATCCCCGGCGCCTTGCAACACCCGCGCAGTCAGCGCACCGCCTGATCAGCGGGGCAACGCGCCTGACGGCCCATCAGAACGAGCGTCAAATGAGCGTCACGATGCCTCTGAGAGCGTCATTTCAGCGTCAAGATATCGCCCGTAACGCCCACAGTGCACATAACGAACACCACTCGAACCTGCAGGTCTGGCTGCCTTTGTGACCGGTTCGAGGATCG # Questionable array : NO Score: 4.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.07, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53986-56453 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000018.1 Streptomyces microflavus strain JCM 4496 sequence18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53986 29 100.0 32 ............................. TCGGAGGTGGCTGCCTGGTGCTTGATCATGGC 54047 29 100.0 32 ............................. GTCCGGCAGGGCTTCCTGACCATGTCGCCGTC 54108 29 100.0 32 ............................. GCGGTGCAGCTCGGCGTCATCGAGGAGGGCCA 54169 29 100.0 32 ............................. GAGGTGTCCAGGGAGTCGGTCATGTCCTGAGA 54230 29 100.0 32 ............................. GACGTCACCGCGGCCGATGCCGCGGTGAAGGC 54291 29 100.0 32 ............................. GAGACACCGACGTGACGACCACGACGGCCAAG 54352 29 100.0 32 ............................. TCCCAGACCGCCTGACCTGAAGGAGACCCGTG 54413 29 100.0 32 ............................. GCGTGGGTCACCCAGGCCGAGAGGAAGAAGCT 54474 29 100.0 32 ............................. CTTCCAGAGTGGGCCCGGCGTGGTGGTGAGAC 54535 29 100.0 32 ............................. AACGCGTGCGCGGCGGGGCTGCTGGCGTCGAT 54596 29 100.0 32 ............................. CGCTGATCGACCTGCGGGACATCTATGAGAAC 54657 29 100.0 32 ............................. CAGATCGAGTCCGGCGGCGACTACCGCGTCAT 54718 29 100.0 32 ............................. CCCGACGTGTTCGAGGCGGGGACCGTGCCCAC 54779 29 100.0 32 ............................. ATCCCGGGCGTCGACGACATGAAGTCGATGCC 54840 29 100.0 32 ............................. GCTGCGCTCGCAGAATTCCTTTGCTTGGCCGA 54901 29 100.0 32 ............................. GAGGGGTCCGCGGGAATCAGCCGCGTCGCGAA 54962 29 100.0 32 ............................. GACCGGCGGCCGGCGGAATCCCCGCCCGACGC 55023 29 100.0 32 ............................. CTCGGCCTGGTCGTCGCGGGCTACATCGGCCG 55084 29 100.0 32 ............................. TCCCCAGTTCCTCAGGGGGACTTCCTCTGGGG 55145 29 100.0 32 ............................. GACCGGCGGCCGGCGGAATCCCCGCCCGACGC 55206 29 100.0 32 ............................. CCCTGGGCGACGAGGTGGCCGAACTGGTGGTG 55267 29 100.0 32 ............................. CACGCCGACTGGCTCGTCGACTCCGAACACAC 55328 29 100.0 32 ............................. CAAGTCATCCGCGCATCCGAGGCAATCCAGCA 55389 29 100.0 32 ............................. TTCGCGCCCGATGTCCATCAGACTCCTCCGTA 55450 29 100.0 32 ............................. ATGTCGACCGGCTCGACGGCCGCCCAGTTGAC 55511 29 96.6 32 ............................T CGGCTGCGAGCTGGACGGGCCCGCCCTGAAGC 55572 29 100.0 32 ............................. TAGGTGCCGCTGATGCCGCACCGGATACGCGT 55633 29 100.0 32 ............................. TTGACCTTCCGCAGGTTGCCCATGCCGGCGGA 55694 29 100.0 32 ............................. TGCGTGCACACCCCTGTTGTACCGCGGCCTAC 55755 29 100.0 32 ............................. ATGACCGGCGGTCTGTCTATCGACTCACCTAC 55816 29 100.0 32 ............................. CCGTGAAACTCTCCCGCACCGTCGCCGCCAAC 55877 29 100.0 32 ............................. ACGTCCAGGGCCTCCCGGATGGGCTGGACCAG 55938 29 100.0 32 ............................. GACTGCATTCCGCTGTGCGTCTCCCGCCACCG 55999 29 100.0 32 ............................. TAACGCACCGTCCTCCCCGCGCCCGCCCTCTC 56060 28 96.6 32 .....................-....... ACGACCCGCTCGTCGCCAAGTGCCGGGAAGGC 56120 29 100.0 32 ............................. GTCCCCGAGCTGACCGAGTCGATGCTCGACCC 56181 29 100.0 32 ............................. GTGCCGCTCCTCGTCCTCGACGACCTCGGCTC 56242 29 100.0 32 ............................. GCAGCGTCCGGTGAGCAGAAGAAGGTCGCGGA 56303 29 100.0 32 ............................. CGGCGATGAACCGCTTCGGGCGGACGACGACG 56364 29 100.0 32 ............................. GGCACCTACGACCAAGGAGGCTACCTACAGCC 56425 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.8 32 GTCCTCCCCGCCGACGCGGGGGTGATCCG # Left flank : TCCCGCGCATCGTCCGGGACGTTCAGAGCCTCCTGACGCCACGCTCCACGGATGCCACCGACGAAGACGAGCCACAGGAGAAGCGCGATGTCCAACTGGTCCACCTCTGGGACCCCAAGGTCGGCGCCCTGCCCGCGGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCATGCTTGTGATAGCCACCACGGCCGTTCCTGATCACCTCCGCGGAGCACTCAGTCGTTGGACCAGTGAGGTCGTCCCCGGCATCTTCGTCGGGAGCGTCTCCGCCCGCGTCCGCGACCAACTCTGGCAAGCCGTCACCGAAACCGTGGGCAACGGAGCCGCCGTCCTCGTCCACCCCGCCCCCACGGAACAGGGCTACGCCATCCGAACCGCAGGCACCCGTCGCCGCGTACCCGCCGACTTCGACGGGCTTACCCTGATCAGTATGACCGCGGCACCAAAGGCAAAGGAAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGAAAG # Right flank : GCAGCTGGTCCTGTGGGGGCCGCCACCCCCGGCCGTACCCAGTCGAAACGGCCCTCTGACCTGCAGTTTTGCCCTGTAGGTTCCGGTTCCTGGCTTCCGGTTGCCTCGGTCTGTTCCCAGGTGTTTCTGTCTGTTCCTGGGCGCTGTTGGTCACGCGTTGGTCATGCACCCCTCCTGAGGCAGCTTCTACCGGTGACTGGCCGGATACATCGATCAAGGCGCGGTCGGCCCCACTCAACGGCCTGACACAGCACGCAGCCCTGGAGAGGATTCTCCGGGGCTGCGGCATGTTCGCAAAAGGTCGAGGCGGTCGGTGCCGTGGGCGCGAGGAAGGGAGGTCTACCTTCGGGCGGGTAGAGCGTGCCGAAGGCGGGCCGAATTTGGGGGGGAGTGGTGCCCGCCGGGCGCCATGACCCCAAATCAGCTGCTCAGCCGGGGCAGTCAGTTCTTGCCCTCGCGGTGGCGTACGGCGTGGGTGGCTGTCCAGGGTGCGATGAGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 213501-213048 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000007.1 Streptomyces microflavus strain JCM 4496 sequence07, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 213500 29 100.0 32 ............................. GCCCCTTCCGGCGGGGCGGACAGCAGCCGTGC 213439 29 100.0 32 ............................. CCGCCCTCGAAGGCCGTGCGGTGCAGTTCGCG 213378 29 100.0 31 ............................. ACGTTCACCCCACCGCCGACTAACCGCCCCC 213318 29 100.0 32 ............................. CTGGAGCTCCATATCCTGCCGAGGTGGGAGCA 213257 29 100.0 32 ............................. GTCCTCATGTCGGCAGGTAGAGGGGAGAGGGG 213196 29 96.6 32 .....................G....... TCGGGCTCGCCGACCAGACGCAGGGCACCGCG 213135 28 89.7 32 ...........AA-............... GTTCGCGGCATCGAGGCTCCGGCCGATCTGCC 213075 28 86.2 0 A..........A-............C... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.6 32 GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Left flank : TCCCGACCCGTCGCGGGGACAGACAGAAGGCTCACAGCAGTCCATGACCGCTCCGTCCGGCGCGCGTGACCGGACCATGACGGTTCCTCACCAACAGGCGTCACATTGGCCGCACAGCAACTGACCCGGGCTCTTAGACTCTTGGGCTCCGCAACTACAGCATCACCGCCTGCCCACCCCCTTCCCCTCCGTGGTGGAGCCGTTCCGGGCGGCGGGGCCCCTATGACCTCTGCCACCGCTTGTGCGGCTGGAGTTGGACCGGCCTCCGGGGCGGGGTGAGGAGTGGGTCGCGGGGCACACTTGAGCGGCGAGCCGGCTGCGGTCAGCGTCGCCCGGGGTGCCGAGGCGCGCCACCGGGGGTAGACAGTGCGTCCGCGATCGGAACAATGGAGCTGCACTGCCTGCGCCACGGGCCACCCATGAGCGAGGCCGATATGTCCGTTTCTCGGGAAGTAAGGAAAAACAGCCTCCTGGCCGCATAAACCCGCAGGTCAGGAACT # Right flank : TGTGGGCGCCTGACCTCGGACACACCCGGGATGCGGTTTCCGCAAGCGCGGGACACCCCGGGTCCGACCGCACACCGCCCGCACCGTCTTCCGTCGCGTCAGCCCGATGCCTCCCCTGCCTTCCGGAGGAACCGGGCCGGTCTCGCTGCGGGGTTGCTGACCCGGCATCCCTCCTCGGGGGCAAGCGCCCCGATCGAGACACGCCGGGTCAGAACTACGCCCCACCCCGTCCTGCGGCGCGGCCCGCACGTACACGGATCCGCACGCCTCGCGTCAGGAGCTCAAGGGAGTGCATGACTTGGCCACAGGCTCCCTCACCCGCACGTCCAGCGCCAGGTTCAGCTCGTCCACGAGGTCGATCGCCGCGTCCACCTCCAGGCGGAGGTACGCCGGACCCTGCGTGCCCCCGTTGAAGGTGATCATCAGCGGCAGGTCGAAGTACGTGTCCTGCCTCTGTACGTCGATGACCCGCATGACGGGACGCGCGGGGATGCGCTCGG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 106631-105443 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000016.1 Streptomyces microflavus strain JCM 4496 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106630 29 100.0 32 ............................. AAGGCCTGGTCGTGGGGCAGCTGGACGAGGCT 106569 29 100.0 32 ............................. ACTGGGATGGGTCCGGCCTTGCCGAGCCCCGC 106508 29 100.0 32 ............................. ACCCGAAAGCTGGACCGCGAGATCGCGGCGGC 106447 29 100.0 32 ............................. TCGGCTGACGAGGCGTCTCCGATGCGCGTCCG 106386 29 96.6 32 ............................G GCCCTGATCCGGACTCCACTCCGGGTCGGGGC 106325 29 100.0 32 ............................. TGCCGCCGCGATCACGGCGATCCGCCCCTAGG 106264 29 100.0 32 ............................. ATGACGGCCCCCTGCCCACTCTGTGAGCTGAT 106203 29 100.0 32 ............................. GTGGGCCACTCCTGGGAGAAGGGCGACTGGAC 106142 29 100.0 32 ............................. GTGGGCCACTCCTGGGAGAAGGGCGACTGGAC 106081 29 89.7 32 ..........TG................G GAAAAGCCCCCATGCTTCACAAACATGGCGAG 106020 29 93.1 32 ..........TG................. ATCTTCAGGTCCAGGCCGGAGAACGGGCCGAT 105959 29 93.1 32 ..........TG................. CCGATCCTGACGCAGCCCTACGTCTACCTCGG 105898 29 93.1 32 ..........TG................. GAGCGGGACATGGGCGCCATGTACGGGGTGGC 105837 29 93.1 32 ..........TG................. GCCGAGTTCGCCCTGGTTCCTGGCCGGCGTCA 105776 29 86.2 32 ...........G.GT........A..... GGTGCGCCGCAGCTCGCGAAGTCGCTCGCGAA 105715 29 89.7 32 ...........G.GT.............. GTCGGCTCGGGCACGGCCACCTCCCACAGGCC 105654 29 86.2 32 G....T....TG................. CAGCTCGTGCTGGTGCTCACCGGCTGATCGTC 105593 29 96.6 32 .........................C... GGCTCCAGGTCCTCAGCGCGGGTGCGGATGTT 105532 29 96.6 32 ..................A.......... GACGGCCGGCCCGGCACCCCATCTCGCGGGTG 105471 29 96.6 0 ...........G................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.5 32 CTGCTCCCCGCACACGCGGGGATGGTCCC # Left flank : GCACGCGGGCATGGTCCCGAACTCCGACCCGGCGAGCCCGTGGTTGGCGAGTGCTCCCCGCGCGTGCGGGGATAGTCCCTGCATGTTCGGCACACCACTTCTGACCTGCGGACTGCTCCCCGTGCACGCTGGGATGGTCCCAGGCGCAGCTGGCGGCCGCCGACCATGTCCTCCTGCTCTCCGTGCACGCGGGGATAGTCCGGGTGAGCAGTCCGGCAGGCCCGCAGCGTCAACTGCTCCCAACGGACGCGGGCATGGTCCCCGCCTGCTGCCCGCCCCCATCTCACCGATGGACTGCGTCGGGCCCGTGGGGACGGTCTCAGCGACGTCGCGTCCTTCAGTCGGCGACCTCGCTGCCCTGAGGGCCCCCGGGGATAGTCTCGACGGGACGTACAGCTGCGAAGAGCGGAGAACGGTGCTGAAAGTATGGCCGGTATGTCGCATTCGGTGAAAGTGCTCGAGAATCGCGCTTTCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GACTTCGCCCGGCTGTGTGATGCCTTCGACCTCTGCTCCCCGTGCACGGCACGCTCCCGGGCGGCGCGCTCACGGTCCTGCTCGGCGCGCTCTGCGCGTTCGGCGGCCTCTCGGAAAGCGGCTTCCTCATCAAGTTTGACCTCGAGCGTTGCAGCCTCGTGCGCCTTGGCCTCTTCCTGCGGCTTGTACTCCTCGGGCTTCCGCTCCGCGGGCTGCTCCTGCTCGCCCGTGTGCCCCTCATGGTCCGCGATCGCGGCGACGGCGGCGGCGGCGCGGGTCGCGTTGAACTCCTTCTCCGATGCGGTCGCAGTCGGCCTGCGAGGCCATGCGACACCGGGGGTACAGCCCCATCATCACCACGCCCCGGCCGCAGGGCTCGTTGTAGCCGGGGCAGGTGCCGTCCTCGGTCTCGATGACGGGCCTTCCGATCGGTCCAGTCCGGCGTCGTCCTCGTCCGCCTCGCGCCCACCTACTGCAGTGACTGCGGCTGGTGTCCCAAA # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 108874-106868 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000016.1 Streptomyces microflavus strain JCM 4496 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================================== ================== 108873 30 96.7 31 .............................A ACGCCAACAGGGGGGTTGAGAGGGGCGGGGG 108812 30 96.7 31 .............................T TGTTCCGGGGGAAGTGCCTCAGCGTGTTGGT 108751 30 100.0 31 .............................. AATCGACCTCGACGACGAAGAGATGCCGGAG 108690 30 100.0 31 .............................. ACCAGCCGACGATCTGGAACCCGGCCGACTA 108629 30 96.7 31 .............................C AGCCGCCCGGCCTCTGCGAAGCGATGGACAC 108568 30 100.0 31 .............................. CCCGGCTGCGCCGACACCTCCCGGCCCGGCC 108507 30 96.7 31 .............................C GGCGCGCGGAACGGGCCTGCCCCTGGACTGC 108446 30 96.7 30 ............................G. GACCATGGAGTTGCGGCCCCGGCCGCGCTT 108386 30 100.0 31 .............................. CGCACAGAACCACGTGCGGACCGGGCCTTTT 108325 30 100.0 31 .............................. GTCTTCCAGGTGAGCGTGATCTCCGTGGCGC 108264 30 96.7 31 .............................C CGGGACAGGCGGGGGGATCAGCGACGGTGGC 108203 30 96.7 31 .............................C GGCTAACCAGCGCGGAACACACGAACGTCCA 108142 30 100.0 31 .............................. AACGTGACGACCGTGAACACCGTCCTTGCCT 108081 30 100.0 31 .............................. ATGACCGCACTCCCCGACGGGTACTACGCCC 108020 30 100.0 31 .............................. AGGAGCTGAAGAAGGTGAAGCCCACGGCTCC 107959 30 90.0 31 .........................C..TC CGTTCGAGTCATCCGCCGGCTCAAGAAGCTG 107898 30 100.0 31 .............................. GGATGCCCCAGCCGGTCGAGCTGGTCGGCTT 107837 30 93.3 31 ...........C.................C AGCCGCTCGCGGTCGGGGACCTCGGCGGCAT 107776 30 100.0 31 .............................. ACACCGAGGTCGCGGTCCTGTGCGACCAGGT 107715 30 96.7 31 ........................A..... CGACCCCGTCCGTCGCGGACATCCGATCCGT 107654 30 83.3 31 .........CT..AC.........A..... AGTACGCGGTACTGGGGGCCATGGCTGACCA 107593 30 83.3 31 ..........T..AC.........A....A CCACCCGCGCCGCTGGCCTGGCGCTCGTCGG 107532 30 90.0 31 ..........T..AC............... CGAATGCAGCGTCCACGATGGTGCTGACCGT 107471 29 80.0 174 ....................-...CC.GAC ATCGCCGGCGAGTTCGGCCGCCAAGCCCTCGATTCCTGTGGGCCCATCGTTGGTATTGACGGGACTACAGACGGAACAGCGGAAGGGTGTGACTGACAGCTTGACCGCTATGCCGGATTCGGTGAAAGTGCTTGAGAATCGCACCCTCCCTCCATAACGCTGCAGGTCAGGAAG 107268 30 96.7 31 .............................T CCTTGAGGCGTGGCTCGGCTCGAAGAAGACC 107207 30 100.0 97 .............................. TCGGCTCGGGCACGGCCACCTCCCACAGGCCGTGCTTCCCGTGCACGGCACGCGGGCATGGTCCCGAACTCCGACCCGGCGAGCCCGTGGTTGGCGA 107080 30 90.0 32 G......................A.....T GCATGTTCGGCACACCACTTCTGACCTGCGGA 107018 30 83.3 31 ..........T..AC..T...........A GGCGCAGCTGGCGGCCGCCGACCATGTCCTC 106957 30 80.0 30 ......T...T..AC........A....G. GTGAGCAGTCCGGCAGGCCCGCAGCGTCAA 106897 30 76.7 0 ........AA..GAC.....C........C | ========== ====== ====== ====== ============================== ============================================================================================================================================================================== ================== 30 30 94.0 38 CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Left flank : TTCGCCTGGACGAGATGCTTGCCGGAAAGCCCGGAGTCTCGTACGACCACGCGTTGATCACCGTCGAGCACGTATTGCCGCAGAACCCGAAGGCCGGGGCGCGGTGGCTACGTGATTTCACCGAGAAGCAACGCGGACAGTGGACGCACCGGTTGGGCAACCTCGTTCTGCTGAACCGAACGAAGAACGCCTATGCCCAGAACTACGACTTCACGGAGAAGAAGACCAAGTACTTCACCGGCAGGCACGGCGTCTCAACGTTCGCGCTGACCAGTCAGGTCCTTCAGCATGAGACGTGGGTGCCGGAGCTGCTACAGAAGCGACAATTGCGACTCGTGGGCCTGCTGGCCGATGAATGGGATCTGTAAGAACCGGCGAGACCATGGAAAGCGTTCTTCCTCTGTAGCGAGAGTGTGACTGGCAGCTTGACCGATATGCCGGATTCGGTGAAAGTGCTTGAGAATCGCGCTCTCCCTCTGTAACGCTGCAGGTCAGGAAGT # Right flank : GCCTGCTGCCCGCCCCCATCTCACCGATGGACTGCGTCGGGCCCGTGGGGACGGTCTCAGCGACGTCGCGTCCTTCAGTCGGCGACCTCGCTGCCCTGAGGGCCCCCGGGGATAGTCTCGACGGGACGTACAGCTGCGAAGAGCGGAGAACGGTGCTGAAAGTATGGCCGGTATGTCGCATTCGGTGAAAGTGCTCGAGAATCGCGCTTTCCTCTGTAACGCTGCAGGTCAGGAAGTCTGCTCCCCGCACACGCGGGGATGGTCCCAAGGCCTGGTCGTGGGGCAGCTGGACGAGGCTCTGCTCCCCGCACACGCGGGGATGGTCCCACTGGGATGGGTCCGGCCTTGCCGAGCCCCGCCTGCTCCCCGCACACGCGGGGATGGTCCCACCCGAAAGCTGGACCGCGAGATCGCGGCGGCCTGCTCCCCGCACACGCGGGGATGGTCCCTCGGCTGACGAGGCGTCTCCGATGCGCGTCCGCTGCTCCCCGCACACGCGG # Questionable array : NO Score: 4.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.62, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 113514-110926 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000016.1 Streptomyces microflavus strain JCM 4496 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 113513 29 100.0 32 ............................. TAGTTCTGCGGTTCGCTGAGACGATTAAGACA 113452 29 100.0 39 ............................. GGCCGAGACCTCGAACAGCTCCCACCCTTCAGGGGTGCC 113384 29 100.0 32 ............................. ACCGCGGGGGACCTGAGCCCGCGCGACCCGTC 113323 29 100.0 32 ............................. TCGGCGGAGCCCTCAGCCTCATCGGCGGCGGG 113262 29 100.0 32 ............................. TCCAACACCGGCGGCGCCGGATGGATCGTCGA 113201 29 100.0 32 ............................. CCACGCTGGCCGTGGTGGGCGACACTCTGTGC 113140 29 100.0 32 ............................. TCGTCCAGGCTCGCGATGTCGGTGTACGTGCT 113079 29 100.0 32 ............................. CTCCCGATCCAGGCGACCCTCACCAAGGGCGG 113018 29 100.0 32 ............................. AACGCGCCGGGCGGGGGAGGGCGGCCGCCGAC 112957 29 100.0 32 ............................. ATCCTGCTCACGGCCGGTGCACAGGAGTGGGC 112896 29 100.0 32 ............................. GCCCTGACCAGCGGACGCCCCCTGTTTCCCCG 112835 29 100.0 32 ............................. CGTCCGGCAGCTCGGCGCAGCGCCCGCTTGCG 112774 29 100.0 32 ............................. CAGAAACCGGCACGAACATTGCCGATTCCCTA 112713 29 100.0 32 ............................. GCGCTGGTGTGGCTCATGTCGGGTCCCTTCGT 112652 29 100.0 33 ............................. CCCCACGGCGGCGGCGGTCAGTCCGGACAGGAC 112590 29 96.6 32 ..........T.................. GAAGACGGACCGGTAAGCGCATCAATTTCCTG 112529 29 96.6 32 ..........T.................. CGGGCCATCGGCCGGGAGATCGGCCGCAATGA 112468 29 93.1 32 ..........T...G.............. GCGGCTGCGAGCCGTCCTTTTTCCCGGTGACT 112407 29 96.6 32 ..........T.................. CTGATCGCCCAGGGCATCCTCACCTCGGCCTC 112346 29 96.6 32 ..........T.................. TGGGCCGCCAGTTCCAGATCGAGGTGCAGGCC 112285 29 96.6 32 ..........T.................. TTGAAGGGGTTCGTGGGCGCCCCGAACGGGCC 112224 29 96.6 32 ..........T.................. ACCGGACACGTCCAGGTCCTCGCGCCCGTTCT 112163 29 96.6 32 ..........T.................. TCGGAGAGCGATCCCGAAGTCCGCTCCGTGCA 112102 29 96.6 32 ..........T.................. AAGGCCGAGGTCGACGGCAACGCCCACTTCTA 112041 29 96.6 32 ..........T.................. ACGTCCGACCCGTACACCCGCGTTCGTGAGGT 111980 29 96.6 32 ..........T.................. GAGATCGAGGCGATCCCCCCGGGCCTGAACCT 111919 29 100.0 32 ............................. CTGGCGGTCAGCGCCCTCGTATTCCTGTGCTC 111858 29 100.0 32 ............................. CCCGGGGGTCCGTCGTGTTCGTCCCGTCGCAT 111797 29 100.0 21 ............................. TATGAGGGTGTGCCACCCATG Deletion [111748] 111747 29 96.6 31 ........................A.... GGCCCAGGGACGACGTCATCTTGTCGACGTC G [111720] 111686 29 93.1 32 .............GT.............. GTCTGCTCGCTGCTCGCCGCCACGCTGGCGGC 111625 29 93.1 31 ..............T............T. TCCGTAAGCTCCATCGTGGTCGTACTCATCC 111565 29 93.1 32 .............GT.............. CTCGACGTAGCAGTCGTCGACACCGACGACAA 111504 29 93.1 32 .............GT.............. ACCGGATGGCGGCATTACATCGACCCGGCCGG 111443 29 93.1 32 .............GT.............. TATCCAATCCACAACGTTGGATCTCCCAATCT 111382 29 93.1 32 .............GT.............. GCCGGAGCCTGATCGCGCTGCGCCCCTTGTGG 111321 29 93.1 32 .............GT.............. AGCAGCGACGGGACAAACGTGAGGATCTCCCC 111260 29 93.1 32 .............GT.............. GGGCAGGGCCGAGGGGAGCCGGACAGCCCGTA 111199 29 93.1 32 .............GT.............. TACCGCATCGAGACGAAGGGCGAGGACGAGCA 111138 29 89.7 32 .............T........G.....T CCCCCAGTCCTTCATCTTCACGTTGAGGATGT 111077 29 93.1 32 .............CT.............. CTGACGGTGATCGTCGAGACGAAGAAGGCAGA 111016 29 96.6 32 .............C............... TGGTTCTTCGACACTGCACGGGCGGCCGTCCG 110955 29 79.3 0 ......A.T....G.......G....T.T | C [110943] ========== ====== ====== ====== ============================= ======================================= ================== 43 29 96.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCGTCGCCTTCCCGATGTCATGCACACCAGCCAGCCACACCACCAGCCGCCGCCCGTCCTCCAGCCCACCGGGCAGCGACGCCCCGATCACACCCCGAACCCGCCCCGGCAGCCACTCATCCCACAGCAGCCCCGCCACAGCAGCGCTGTCCTCCAGATGCCGCCACAACGGCAGCCAGCCCTCGGCATCCCGGTCATGCTTCGCCCACACCCGCCGAACAGCACCCCGCAGCCGCCCCCCGAGACCTAACCGGCCCCCACCCTCATCAGCCATGTCAGATAAATACAGGCAAACAACCGAACAACACGCCCTGATCAGAAAATCTGATGCCATTCCGCCGACCACCACGTGTCGGCCGATGTCCGACCGTAAGATGCGCCACCACCATCTGCGACTTGACACAGCAAGCAGCCAGAAAGGCGCAATGGGCGATATGCCGGAATCAATGAAAGTGCTCGAGAATCGCACCCTCCCTCTGTAACGCTGCAGGTCAGGAAGA # Right flank : TGACAGCGGCTTACCTCGCGTGGAGAACACCCGGGGTCGGCTGAGCTGGGCGTTCGTATTCGGGTGCTCTCCGGGCGGGTGGAGGCGATCCGGTGATGCCGTGGAGTCAATGACCCCATAGCGGTGTTCTCCGCGCGGGGCGGAGCCGAGCCGACACCTTGCTGGCCCCGGGCGCCGCGTCAGCGACTTGGGCCGGGTTCGTTGTCTACCGGGACGCGGTGCCAACTGCTGCCTCATCATGGGGGCATGCAGCAGCTCGAGGCGCAGGAAGTTTCCCTGCACAAGGTGTTCAGCAGCGACTACGACTTCAGGATTCCGGACTACCAGCGGCCTTACGCGTGGGATGTCGAGCAGGCGGTCCAGTTGCTCACGGATCTGGAGGAGTCGCTTGAACGGGGCACGGGCGAGCCGTACTTCCTTGGCTCGGTCGTCCTGGTCAAGGCGAAAGGCGATGCACCGGCAGAGGTTATTGACGGGCAGCAGCGCCTCACTACGCTGAC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : CTGCTCCCCGTGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 123147-125432 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMUG01000016.1 Streptomyces microflavus strain JCM 4496 sequence16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 123147 29 100.0 32 ............................. CGGTTCCCAGATGGAGAACCGCTCCACCTTCT 123208 29 100.0 32 ............................. GACGTCGTCGCCTGACCCGCGCCCCGCGCAGG 123269 29 100.0 32 ............................. GAGCTGTACGCCGAGAAGAACCAGGTGGGTTT 123330 29 100.0 32 ............................. AAGGGATTCACCTTCGAGAAGGGTGCATGAAA 123391 29 100.0 32 ............................. CTCGGAAACAGCAAGGCGGCGAATGACGCCCT 123452 29 100.0 32 ............................. CGGTGCTGGTGGTCCTCGACCCGCTCACAGCC 123513 29 100.0 32 ............................. TATGGGTAAGTTCTACTCATGCACCAACCCCC 123574 29 100.0 32 ............................. TGCACGCTTGCGCCCGCAAGCAGCGCGGTGAT 123635 29 100.0 32 ............................. TCCTCGCGCAAGGCCTCCATCCGCCTGGTGGC 123696 29 96.6 32 ............................T CCAGTGGTCGCCGCTTGCCTTGGTATTGCATC 123757 29 100.0 32 ............................. CCGGCCGGCCGGCCGCGGGCTCGTTCGCGGTG 123818 29 100.0 32 ............................. ACCCGCCTCGACCCGAGGGGCAGGCGGGTGTG 123879 29 100.0 32 ............................. TACGAGTTCTGGACGCTCCAGGGCCAGGACGC 123940 29 100.0 32 ............................. TCAGCCACGCCATCGAGTGCAACAGCATCAGT 124001 29 100.0 32 ............................. CCGTCCGGGATCGGGCAGTGCGCCTCGATCCA 124062 29 100.0 32 ............................. CAGCTGGGCAGACTCCGCCGGCCGCACCTGGA 124123 29 100.0 32 ............................. GACAAGTAGAAGCCAGAGCGAGGTCGATGTCA 124184 29 100.0 32 ............................. GCTTCGCGCCCCGGCTGGGGTGGGGCGGTCGG 124245 29 100.0 32 ............................. CACTGGTCGCCGTCCTTGTCGCGGTAGGTGTC 124306 29 100.0 32 ............................. CACGCGACCATCGGCCCCGACCGGCTCGGATG 124367 29 96.6 32 ............T................ GTCCCGCTCGAGATCACCGCGACCACCGAGGT 124428 29 96.6 32 ............................T CTTCCAGGTGACGCGGAAGTTGAGGAGCCAGT 124489 29 100.0 32 ............................. GACGACCACCTGACCCTCCCCGTCACGGCCGG 124550 29 96.6 32 ..........T.................. TCGCCCATGCTGCCGTCGGTCGTGGTGACGGC 124611 29 100.0 32 ............................. GTGCGAGGCCTGATTGTAGGCGTGGCTGGAAA 124672 29 100.0 32 ............................. GTCTGGGACAGGGCGGTGCCGATGCAGGCGGT 124733 29 100.0 32 ............................. CCCACTCCGGGTCTGGTCAGCACCGCGCCCGG 124794 29 100.0 32 ............................. ATGAGCCCCAGCAGCCGCGACGCCCATGCTCT 124855 29 100.0 32 ............................. CACGCGGACAGCCGGAGGCTGACCCGGGCGCG 124916 29 100.0 32 ............................. ACCGTGAACCTCGCCGGCGGATGGTGGACGGG 124977 29 100.0 32 ............................. CATGCCGTGGACGACGCCCGGACGATCGTCAG 125038 29 96.6 32 ..................A.......... GACCCGCGCAGCGACGGCCCGGCGTACGTACC 125099 29 93.1 32 T.........T.................. GACCGGCTCATCAAGCTGACCGAGTACCGACG 125160 29 100.0 32 ............................. GACGACGGGACACGTCTATGCCGACCGGCACG 125221 29 79.3 154 ........A..........A.G..AG..G CCGCGGGGACGATGTGCTCCTGGTGGTGGTCGGTGCTCTCCGCTCGAGCGGAGTTGAGCCGCAGGACGAGATGTCCGGCTACGAGTGGACGTTGCGTTCTCCGCGCGAGCGGAGGTGAGCCGCCCACCGGCGTCAGCGGCAAGGCCCATGACGT 125404 29 69.0 0 G.....T......AA.T..A.G..AG... | ========== ====== ====== ====== ============================= ========================================================================================================================================================== ================== 36 29 97.9 36 CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAGCGACAGAGGCCTGAACGTCTCCTCGGGAGTGAACTACGGAACCGAAGACGAGGCGGCAATCTGGTGACCGTTATCGTCCTCACCAACTGCCCGCCCGGCCTCCGGGGCTTCCTCACACGATGGCTCCTGGAAATCTCCGCCGGCGTGTTCATAGGCAACCCCTCGTCCCGCATCCGAGACGTGCTCTGGGACGAAGTCCAGCAGTACGCCGGACAAGGCCGCGCGCTCCTCGCCCACACGACCAACAACGAGCAGGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCAACCGACCACGAAGGCCTCACTCTGATCCAGCGCCCCCATACCACTACGAGCTCAACTAGCAGCACTGCGAAGCCGGGGTGGAGCGCGGCGTCCAAGCGGCGCCGCTTCGGAAGAAGATAGAAGACTAAATGTCTCATCTGTCGGAATCGATGAAAGTACTCGAGAATCCGCTGTTCGCGAGATAAACCCGCAGGTCAACGAGT # Right flank : CGGCGTCGGTCATGTCCTGCGGCTGACGTGCTCTCCGCACAAGTGGGTCCGCCGCGGCTTTCAGCTCGCCCATGGGGCCCGTAGTTCGCACCTACGGGCGCTGGTGGGAGGCCGAGACCGCGGCCAGCGACACCACGGCGCCGTGTGCACCATCCGCGTGGTTCCCGCGGGAACGGCGTCCACAGGCAAGCCGTTCCGGTCGGCGTTGTCCTCCCCGGCCGCGTCGGAAATGCCAGCGAATAGACGGGAGTTAATGGTCACCGACGGCTGCCGCGAGGCGCTCGCCGCTTACTGCGTCACCTTGAGTACTCATCCGGCATTACACCAACGCTGAAGTCGAGGCGGCCGTCGAACGACAGTTCCGTGACCGGATCGGTAGTGGGGGAGGGCGGCGTGAACGGATTCGTTGACAATTTTCGCGATCTTGAAGGGGCTCGGTGGGGGTGTGCGTCAGGCGTGCGGGGGTGTCAGGGTTACGCGCCCGCACGCGGCGGATTCAG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //