Array 1 1378-2404 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QLQN01000038.1 Streptococcus iniae strain QMA0249 NODE_32_length_26462_cov_61.6018_ID_2636, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
      1378	    36	 100.0	    30	....................................	TTTGCAACGGTCGAAGATGTTACTGCTTTG 	
      1444	    36	 100.0	    30	....................................	CACCTCCTCGAAGCGGTAAGACAGTTGTAA 	
      1510	    36	 100.0	    30	....................................	CCATTTATGACTGGAAAACCGAAGATATCT 	
      1576	    36	 100.0	    30	....................................	TAATGATTTAGTAGAGCCGTCAATGATAAC 	
      1642	    36	 100.0	    30	....................................	GAATGAAGCTGGAGTTTATCCGAGGCATGA 	
      1708	    36	 100.0	    30	....................................	CACCAGTTAACGTTGAAGGTAACATCGTAA 	
      1774	    36	 100.0	    31	....................................	GTTTTCTAACTAAACTCCCTACAGTACCTAT	
      1841	    36	 100.0	    30	....................................	CCGATGAACACGCAGGTTGGCACATACCAT 	
      1907	    36	 100.0	    30	....................................	TGGATAAACGATAAGAGTAATCACGGATAA 	
      1973	    36	 100.0	    30	....................................	TGAGAGAGGTTATTCATCAGCTGTAATACA 	
      2039	    36	 100.0	    30	....................................	GAATTTTAAATTGGTATAGTCGGAGTTGTT 	
      2105	    36	 100.0	    30	....................................	TTCCAGCTTCTGTGTTAACATCATGCTGGT 	
      2171	    36	 100.0	    30	....................................	CGGTTTAGCTGCTCTTGAGAAGATTGTATT 	
      2237	    36	 100.0	    30	....................................	TTAGTATTAAATATAATATCAACACCTTTA 	
      2303	    36	 100.0	    30	....................................	TACAACAGTACCTATAAGTGTGGCTACACC 	
      2369	    36	  75.0	     0	................T.....TG..T.T.TTT..G	|                              	
==========	======	======	======	====================================	===============================	==================
        16	    36	  98.4	    30	GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC	                               	       

# Left flank :   AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTCAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG
# Right flank :  GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT

# Questionable array : NO	 Score: 6.18
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:63.89%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//