Array 1 207804-208930 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804815.1 Rothia sp. HMSC065G12 Scaffold160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 207804 29 100.0 32 ............................. CCCCACAACACTCAATATCAGCCTAGACGACA 207865 29 100.0 32 ............................. TGGTCTTTTGTTGCTTGGATGATACGGGCTGC 207926 29 100.0 32 ............................. CTCGTCGGTTGCCATGCGGCGGAGTGCGCGTG 207987 29 100.0 32 ............................. CCACGCCAGAATACAAGGCATAGCCTCAGGCA 208048 29 100.0 32 ............................. TACTTCCACCATTCGTTATAATCTTCATCCGC 208109 29 100.0 32 ............................. TTTGGCTCTGCTGTTATGTACAACTCTATGAC 208170 29 100.0 32 ............................. CAGAGAGCAGGCGCGAAATGATGCAACAGGAC 208231 29 100.0 32 ............................. GAAACAGTACCAAGTGCCCGCCCTACTCTCTG 208292 29 100.0 32 ............................. CGCATCACCACCGGCGAGGTTCGCCTTTCATT 208353 29 100.0 32 ............................. GAGTCGCCACCCGGTGCTACGAACACTTTCAC 208414 29 96.6 32 ............................T TAGCGCAGGATGCGCTCATGAGCTATCTACAA 208475 29 100.0 32 ............................. GGGTATGTGTGGTTGACGTACACTAGCTACTC 208536 29 100.0 32 ............................. CAAACCCTGCGCCAGGTCACCAGTGATCGTGT 208597 29 100.0 32 ............................. GAGCGTAGCTAGAAATAGCTTCTTTGATCCAA 208658 29 100.0 32 ............................. AATGTTATCTGCCATGCCGTCCACCTCTCTAC 208719 29 100.0 32 ............................. AAATGAGCGAATTTCTTAACTACGAAAAGCTA 208780 29 100.0 32 ............................. GTTACCCACCCGTCCGTTGAAAAAGACCAATC 208841 29 100.0 32 ............................. AACCACCGACTCACCACGCACAGACCCCACCA 208902 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : GGGCTCTGGAACGGTCGGGGAGAGGAGCAAGAAAGCGGGTACAACTATGGAGCTGATGAGTGATGATTGTTGTCGTATTATCCGCATGCCCGGTTGGTTTACGAGGTGATCTTACGAGGTGGCTATTAGAAATTAGTGCTGGCGTTTTTGTAGGAAAAGTGAGTGCGCGTGTGCGGGAGCATCTATGGAATCGTATTACGGTTACTTGTAGTGATGGACGTGCTCTTATGGTGTACTCGGCAGATAATGAACAGCGTCTTGATTTTAAGATTCATAATTATCCATGGGAGCCTGTAGATTTTGAGGGGGTTAAACTTATGATGCGTCCGTCTACTCCAAAAAAGGGGTTGGTACCTCGAAAAGGATGGAGCAAAGCAAGTCGATATAGGCGTGCTTCACGACGCAGGTAAGAGCATATCGTGTATTCTTGGAAGTAGGTTATGGGCTTTAAACTAATACTAAAACTTGAGGTATGGGGGTAAAACCCCATGTCAGAAAGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAATGTTCCCCGCACCCGCGGGGATGAGCCCCTTGCCCGTTACCTTGACCTTCTGAAGGAAAAATGTTCCCCGCACCCGCGGGGATGAGCCCAGAGCGACGCTACGCAGGTGATCAATTCACCAATGTTCCCCGCACCCGCGGGGATGAGCCCCGTCGTCGCCTTTCGCCTCTTCGAGTATATCCATGTTCCCCGCACCCGCGGGGATGAGCCCAGACGTTGAAGGGTGGTATGGCGGCGTAGGGGATGTTCCCCCGCACCCGCGGGGATGAGCCCCAACTAGACTTACCCGAAACAGGCGGGGGTAAATGTTCCCCGCACCCGCGGGGATGAGCCCTCTGGTGATTTTGTGCGCGGCTTCTCTGCTGGATGTTCCCCGCACCCGCGGGGATGAGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 209035-209430 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804815.1 Rothia sp. HMSC065G12 Scaffold160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209035 29 100.0 32 ............................. CTTGCCCGTTACCTTGACCTTCTGAAGGAAAA 209096 29 100.0 32 ............................. AGAGCGACGCTACGCAGGTGATCAATTCACCA 209157 29 100.0 32 ............................. CGTCGTCGCCTTTCGCCTCTTCGAGTATATCC 209218 29 100.0 32 ............................. AGACGTTGAAGGGTGGTATGGCGGCGTAGGGG 209279 29 100.0 32 ............................. CAACTAGACTTACCCGAAACAGGCGGGGGTAA C [209283] 209341 29 100.0 32 ............................. TCTGGTGATTTTGTGCGCGGCTTCTCTGCTGG 209402 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : CATGTTCCCCGCACCCGCGGGGATGAGCCCCAAACCCTGCGCCAGGTCACCAGTGATCGTGTATGTTCCCCGCACCCGCGGGGATGAGCCCGAGCGTAGCTAGAAATAGCTTCTTTGATCCAAATGTTCCCCGCACCCGCGGGGATGAGCCCAATGTTATCTGCCATGCCGTCCACCTCTCTACATGTTCCCCGCACCCGCGGGGATGAGCCCAAATGAGCGAATTTCTTAACTACGAAAAGCTAATGTTCCCCGCACCCGCGGGGATGAGCCCGTTACCCACCCGTCCGTTGAAAAAGACCAATCATGTTCCCCGCACCCGCGGGGATGAGCCCAACCACCGACTCACCACGCACAGACCCCACCAATGTTCCCCGCACCCGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCA # Right flank : CGGGGCACACAAAAGCACCTGCCTATTCTCATTATGTTCCCCGCACCCGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATTATGTTCCCCGCACCCGCGGGGATGAGCCCGTACACGCCGCGGGGTATTAGAAAGGGTCACAATGTTCCCCGCACCCGCGGGGATGAGCCCGACTGGGACCCGCGCAACGAATTCTAAGGAGCATGTTCCCCGCACCCGCGGGGATGAGCCCAGTGGGAGAGATGACGGAAATCACCATCGAATATGTTCCCCGCACCCGCGGGGATGAGCCGAACCCTGAAGAAGCAGCTGCCACACTCTCGCTGTTTTCCCCGCACCTGCGGGGATAATTTTTCAACCCTATGAGGAATACTCCCTTAAATCTAGTGATGCATATCATGCTTATTGGAGTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 209596-209868 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV804815.1 Rothia sp. HMSC065G12 Scaffold160, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 209596 29 100.0 32 ............................. GTACACGCCGCGGGGTATTAGAAAGGGTCACA 209657 29 100.0 32 ............................. GACTGGGACCCGCGCAACGAATTCTAAGGAGC 209718 29 100.0 32 ............................. AGTGGGAGAGATGACGGAAATCACCATCGAAT 209779 29 96.6 32 ............................G AACCCTGAAGAAGCAGCTGCCACACTCTCGCT 209840 29 72.4 0 G.T...........T........A.TTTT | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 ATGTTCCCCGCACCCGCGGGGATGAGCCC # Left flank : ATGTTCCCCGCACCCGCGGGGATGAGCCCAGAGCGACGCTACGCAGGTGATCAATTCACCAATGTTCCCCGCACCCGCGGGGATGAGCCCCGTCGTCGCCTTTCGCCTCTTCGAGTATATCCATGTTCCCCGCACCCGCGGGGATGAGCCCAGACGTTGAAGGGTGGTATGGCGGCGTAGGGGATGTTCCCCCGCACCCGCGGGGATGAGCCCCAACTAGACTTACCCGAAACAGGCGGGGGTAAATGTTCCCCGCACCCGCGGGGATGAGCCCTCTGGTGATTTTGTGCGCGGCTTCTCTGCTGGATGTTCCCCGCACCCGCGGGGATGAGCCCGGGGCACACAAAAGCACCTGCCTATTCTCATTATGTTCCCCGCACCCGCGGGGATGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATT # Right flank : TTCAACCCTATGAGGAATACTCCCTTAAATCTAGTGATGCATATCATGCTTATTGGAGTTGGTGGGGTATTTCCTTAACTGTATAGTTATATATGTTGTTCGGGCGGGTCCCGAAAAACAGTCCGGCCCCATCGTATAGCGGCCTAGTACTCCGCCCTCTCACGGCGGCAACACCGGTTCAAATCCGGTTGGGGTCACACTAGGAAAAGAGAATTCCCCGGTTCAGGCGAACCGGGGAATTCTCTTTATCTTTATAAATGCCAAGGGGGTCAGGATTTTCTAAAAGGCACTTATATAACCTTTTCAGCAAAACCTAACCTGCTCGCGTCATAATGTGAATAACCAGAAACGGGGAGCAGCCTACTTATTCTCCCCGCCCGCACTCGCAGACCCTTGCGCACTGGCAGAAGCACCCGCTGCGGCAGGAGCACGGTGCACCATACGCCACGTTCCCTCAAGATAATGAGCCGTCACCTGGCCCGAGACAGCCCCGCTCGGCA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCACCCGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //