Array 1 24497-26458 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCAC01000055.1 Neisseria meningitidis strain Nm56 Nm56_scaffold_58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24497 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24563 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 24629 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 24695 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 24773 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 24839 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 24905 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 24971 36 100.0 30 .................................... CTGAAAGGTAAGGAACGGGCGGCTTGTGAG 25037 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 25103 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 25169 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 25235 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 25301 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 25367 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 25433 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 25499 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 25565 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 25631 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 25697 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 25763 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 25829 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 25895 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 25961 36 100.0 30 .................................... ATAAATTTGTGTCTGCGTTATTCATTTTAG 26027 36 100.0 30 .................................... ATAAAAAATCGAAAAAATCAAAAATACTAG 26093 36 100.0 30 .................................... CGAAGCAGGAAGACGAAATCAAACGGCACG 26159 36 100.0 30 .................................... CGTTTAAAGACAGATAACCGGATTCGCGTT 26225 36 100.0 30 .................................... CCGCAACCGTCTGCACCGTAAATGTAATCA 26291 36 100.0 30 .................................... CATGGCGGTCGTCATATGGGGGTTCCTTCG 26357 36 100.0 30 .................................... TGGATAGGCGTTCCGCAGCATCAGCAAGCC 26423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 30 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //