Array 1 90695-89888 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADMLJ010000002.1 Pasteurella multocida strain PMS 14 NODE_2_length_176621_cov_47.713395, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     90694	    28	 100.0	    32	............................	CGATCGCCGCCGCTATTCGACCGGGCGCGATG	
     90634	    28	 100.0	    32	............................	TTAAGTGCATTAAAATTGCCAGAAATGGAAAC	
     90574	    28	 100.0	    32	............................	GTTTCCGTCGCCCACTGCAAAGTGGGTGATGT	
     90514	    28	 100.0	    32	............................	ACCAATAGTCGTCGCGCTCAAAATCAGGTAAA	
     90454	    28	 100.0	    32	............................	AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC	
     90394	    28	 100.0	    32	............................	AAGCCACAGCGCAGATGAGCACGTCATCACGT	
     90334	    28	 100.0	    32	............................	GATCCAAGCGTTACAAGTGAATCGTGGCTCTT	
     90274	    28	 100.0	    32	............................	AAGCACTATGCCGATAGCTCCCCAAAAGTCAT	
     90214	    28	 100.0	    32	............................	AAAAGCATTCTGTTTACGCGTAAAAGGATCAA	
     90154	    28	  96.4	    32	............G...............	AGCTTTAAGCTCTGCAAATGCCGAACTCATAC	
     90094	    28	  96.4	    32	............G...............	GATTATTTTAAGCAACGGAGCGGAATTACACT	
     90034	    28	  92.9	    32	............G....T..........	GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT	
     89974	    28	  96.4	    32	............G...............	TAAAGCGATCTTGGCTCGATTATCAGATTGGT	
     89914	    27	  85.7	     0	....................T..C-..T	|                               	
==========	======	======	======	============================	================================	==================
        14	    28	  97.7	    32	GTTAACTGCCGTATAGGCAGCTTAGAAA	                                	       

# Left flank :   CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA
# Right flank :  TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTAACTGCCGTATAGGCAGCTTAGAAA
# Alternate repeat :   GTTAACTGCCGTGTAGGCAGCTTAGAAA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:57.14%AT]
# 	Reference repeat match prediction:         R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [7-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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