Array 1 2777545-2776617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045008.1 Proteus terrae subsp. cibarius strain ZF2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2777544 28 100.0 32 ............................ ATAGATAAATATTTATGTTTTCTCATTGAAAT 2777484 28 100.0 32 ............................ ATATTATCTTCACGGCCTTGCTTTGTAGATTG 2777424 28 100.0 32 ............................ ATTAGTGAATGTGCCCAGGCGAAAATTAATCG 2777364 28 100.0 32 ............................ ACCCGATACTCGATGTAAATCATTTAAACAAT 2777304 28 100.0 32 ............................ TAACCTGTCGATGGTTTCACAAAGCAACTTAT 2777244 28 100.0 32 ............................ CGAAGAATATCCTTGATGACACTTACCAGAGA 2777184 28 100.0 32 ............................ AGTTAACGGTAATAATAAAGGCTCAATGCTTT 2777124 28 100.0 32 ............................ ATCACGCCACACTTCATCAATCACCGGTGTCA 2777064 28 100.0 32 ............................ GCCTGAGGTGGCAAAATAATCAGGCTCAATAT 2777004 28 100.0 32 ............................ TAGCGGGAAAAACCTTAACCGATGTGCAAAAA 2776944 28 100.0 32 ............................ ATATAAACCTATTTTTGAGCGTTTATTTTTAT 2776884 28 100.0 32 ............................ ACTAGCAGAATTGATACCGCTAGAATCGCCAT 2776824 28 100.0 32 ............................ TACAAGATTTTGCGCTTCTAAAACTTCGTTGA 2776764 28 100.0 32 ............................ TGCAGTAATTTGCACACTTGGCGAAACGTCAT 2776704 28 96.4 32 ..T......................... AGTCAAACTCATAACTAATTCTTTTTGTTCGT 2776644 28 96.4 0 ..T......................... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTCCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTGGGAGAATATGCCTGTTTTACGCGCCACAATCCTAAATCTCAACAGCGTCGCTTAAAGCAATTGGAACGTCGAACTTCTTACTTAGCACAAAAACATGGTGTTGATGAAGATACTATGCGAGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCAATAAGTCGAACTCGCAATTGAGGAATAGCAACACATTTTCTTGTTATGGGTTGAGCCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAACCTAAATATTCAATAGCAAAACCCTTTATTTTTCTCTCTTTAAAAACTTCAGTAAAAACAACAAGCTATATGCGGGCGTTTTTAATAAGGTAAGAATGGTTAAATCTTACTAACGTCTTGCTGGAGCTTGTTTTTTCGTGATAAAGCTATT # Right flank : TATAGAGGAGAGATTGTTTTTCAGGGTTAAGGGCTCACTGCATCCCGGATGTTTTATTTCCGTTCGTGTACAGATGCTAGAGCAATCCATTTATAACGTGAGAATGCGTGAGATGGAAAAGTTTCTTTTGGTACTAAAAAACTATAGAGAAAATAAAATTATTAAATATGGGGATAAGGCAAGGATATTTATTTGGTATATGGAAAATATACAGAAAATATACAGAAAAGAAACGCCACTATAGAAATAGCACTGCCTTTTTTAATTCAAGATTTTCGTAGTTATAGTTTAGAGAGTGATCTTTCAGATGATGAGGTAAAAAGTACAATAAGGAAAGTTAAAGAGTATCTTATTCAAGCTGAAAATAGGTATAAAAAAACTAAAGGGTATGATAAGAGTTAATCAGAACACCAATAAGACACCAGAAATTGATAACTGATTGAATATATAATTCGATAACTGGCACTGCTTTATTTTTTCAATAAATTAGCCATTTCTGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2787667-2786258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045008.1 Proteus terrae subsp. cibarius strain ZF2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2787666 28 100.0 32 ............................ TTGCTGATTGATAACGCCTAAATGTTCGAGGT 2787606 28 100.0 32 ............................ ATCATCTGATAACTGTTGCTTACCTAATGTAG 2787546 28 100.0 32 ............................ AAGAAGGTTTAGCACCATCAGTTGATGAGAAA 2787486 28 100.0 32 ............................ GTAACTTGGAGCAACGAACCAATAAACGCCCC 2787426 28 100.0 32 ............................ ACTAACAGCCTAATGTCGGGCTTCTCATTAAA 2787366 28 100.0 32 ............................ GTGTATATCAGCTCTATATTCATCACCAGCAT 2787306 28 100.0 32 ............................ ATGAGGCCTGTGACTCTGGCACACCGTAAACC 2787246 28 100.0 32 ............................ TACAAACAAAATTTAAGAACGTATGCGGAATG 2787186 28 100.0 32 ............................ TAACTCTGAAATATGGGTGAGCTTTAACCCGA 2787126 28 100.0 32 ............................ TCTACCTTCGTTTAGGTCAGTATTTGATATTA 2787066 28 100.0 32 ............................ TAATACCGCACGCCTCCATTCATTCAGTGATG 2787006 28 100.0 32 ............................ ATCAGCATCACGTAAAAAACGGGTTGCGACTT 2786946 28 100.0 32 ............................ GTATTCAGGCTCAACGGTGCGCCACTCAACAA 2786886 28 100.0 32 ............................ TTTTTAAGTGGGGCAGAGAATAAAGGCATTGA 2786826 28 100.0 32 ............................ ATCAAAAAAGTTAGTGGTGATATCTACGAATA 2786766 28 100.0 32 ............................ TGTTGTATAAAGTATCTCGCTACCGATATATC 2786706 28 100.0 32 ............................ TTTATCCTGCATAATTACAGGAATGTTAGAGT 2786646 28 100.0 32 ............................ TATGAGGGACACTTAGCGGAAGCTGATGAATA 2786586 28 100.0 32 ............................ TGTACGAATGTTCCAGCCTGTGGTTTTCCTTA 2786526 28 100.0 32 ............................ CGTTAGCTTGGTAGCTTCTTGATGCAGAGATG 2786466 28 100.0 32 ............................ AAAGAACAGGCACATCGATTGCAGCGAATACG 2786406 28 100.0 32 ............................ AGATGGATATTGCTTTTCCTCCTCACGAGTAA 2786346 28 100.0 32 ............................ TATTGCAGTGAACACAGCCAGCATGAATATTG 2786286 28 89.3 0 .......A.........T..T....... | G [2786260] ========== ====== ====== ====== ============================ ================================ ================== 24 28 99.6 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCAAGGGCGTGCAATGCAATGCTCCTCTCTTATTCACGTTATTATTGATTCAACGGAAAATACGATTAGTCGAGTGAGAGTGGGCGGAAAAGCGACAATGATAGGTTCGAAGATTATTACTCTTTAAATTACTTGCGGTATTTTATATCAAGTTATTCCTAATAGGCCCCAGTGTAAAAACTAGGGCCTTTGTATTTTAAGTATTTATATAAAAACGACGTATTTATTGCTTCTTAAAATTTTATTATTGTTCGCTATGTGATTTGATTTTTCATTAAATAGATTTTATGGCAGAAAATGCGTAGGTGGTTTTTGTGAAAGTACCCGGAACGTTGAACTTTGGTTTTGACTTAAGTATATTCAATAATTAACCCTTTTATTTTGTTCTTTAAAAACGATAACAAAAACAGATGGTTACATTTTGCTGTTTTAAGCAAGGTAAAAATAGCTAAATGTTGCTAACACCTTGCTGTATCTTGTTTTTCTATGACAATACTATT # Right flank : TTTATTTAATATATTTAAATCTTTTTCAGTAGTTATTAAAGCGTGTTTCACTTGTATATTCCTTTCTTATTGTATTTAGAAATAACTATTTGGCATTTTTTATAATTAAATTTTCCTTAATAGTTCACATATATACAATTTGCTTATGTCATGCTTATTCCTTAATTGGTATTGTTTGGAAGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGAGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTTACAGAGTCGAAGAAAGAGAATCTCTACTTCAATATCCCTATTGCTAACACTACCGTCTTATTACTTGGTAATGGCACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCTGGTGTATTGGTAGGTTTTTGTGGTGGAGGTGGCACACCTCTACACATGGCGACTGAGGTAGAGTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //