Array 1 13301-11256 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUR01000003.1 Salmonella enterica strain BCW_6510 NODE_3_length_321893_cov_4.14805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13300 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 13239 29 96.6 32 ................T............ GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 13178 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 13117 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 13056 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 12995 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 12934 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 12873 29 100.0 32 ............................. CAGACAGTAAAAGTGAGGCAGCAGGGCGGAGC 12812 29 100.0 32 ............................. GCATCAAGCCCCCCATCCGCCCGGGTTGAGAG 12751 29 100.0 32 ............................. AATTCCTCGATAACGATCTGCACCAGGTTGAA 12690 29 100.0 32 ............................. CCGTATCGGGTGTTTAATTTTTACGTGAGAGA 12629 29 100.0 32 ............................. AGCGATACAATTCAGGAGTTCCAATTCTCTGT 12568 29 100.0 32 ............................. TTAACGTAACAGTGTATTTTTTGTCCCCGTTG 12507 29 100.0 33 ............................. GTCAGAAATATTAGTTACCTCGGCGGCGTTAGC 12445 29 100.0 32 ............................. GCGATCACCTGTCGCTGGCGGAAATCAATAGC 12384 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 12323 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 12262 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 12201 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 12140 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 12079 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 12018 29 100.0 32 ............................. GCAAAAGGATCGAACAAAAAACCTGTGGTCAT 11957 29 100.0 32 ............................. CCGTTACCGTTGTTCACGTCCGGTTCGCTAAT 11896 29 100.0 32 ............................. TCTGTACACGACGTAACGACCACATCATTCAG 11835 29 100.0 32 ............................. GCGACGAGCGCAACGCAGGTTACTGGCGTTGA 11774 29 100.0 32 ............................. TTTTCGCTCGCGCTCGTCCATCATTCCGCGCC 11713 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTTGTCTGCGC 11652 29 100.0 32 ............................. GGGCAGAATTAACGGACGAACAGCGGCAGACA 11591 29 100.0 33 ............................. ACCGTTAAATCCTGGTCTACTACCCCGCCCACC 11529 29 100.0 32 ............................. GGAGCGGGACGACAGCGAACCATCCGGAAAAA 11468 29 96.6 32 ..........A.................. CCAGACGACCTTCGGTGTCTTTAATCAGTTTC 11407 29 100.0 32 ............................. CGATAACGGGCGGGCGTTTATACGTGCCCGCG 11346 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 11285 29 96.6 0 ............T................ | A [11258] ========== ====== ====== ====== ============================= ================================= ================== 34 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29778-29445 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUR01000003.1 Salmonella enterica strain BCW_6510 NODE_3_length_321893_cov_4.14805, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29777 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 29716 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 29655 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 29594 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 29533 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 29472 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //