Array 1 8962-10512 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZN01000025.1 Campylobacter concisus strain AAUH-10HCdes3 1104328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 8962 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 9029 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 9094 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 9158 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 9225 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 9294 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 9362 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 9429 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 9495 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 9562 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 9626 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 9693 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 9759 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 9824 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 9890 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 9956 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 10020 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 10086 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 10150 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 10217 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 10283 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 10351 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 10415 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 10483 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : CATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 5326-5661 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZN01000009.1 Campylobacter concisus strain AAUH-10HCdes3 1104312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 5326 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 5401 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 5478 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 5550 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 5631 29 86.2 0 ............C..T.........CG.. | A,A [5654,5656] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TGCATACCCAAAGGCTCCTCGCACCTGCGAGCCAATAAAAAATGGCGGCTTTTGTGACGGCTCAAATTTCACTCTAAGCTCGGCATACCTCATCTAAACTCCTTATCTTCACATAGTCTAAAACCACGCCCACCATGCTCTTTTTTAGAGCATTTTTTCTATTTATTTTAAGTTTGGGGATAAATTTATTAAGCTCTAGTAGTTTTATCAGCATGCCAAGACTATCTCTTGTCGCCCTTATATCGCTAGAAAAGGTCAAGATCATATTAGTTTCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTT # Right flank : CCCATACCACATTTAAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGCTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACAATCTCATAAGCTCATTATTAAATGGCACCTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAACAGAGCCAGCAGTTTCATAAACGAAAATGACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTAAAAATTTTGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 8646-9971 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZN01000009.1 Campylobacter concisus strain AAUH-10HCdes3 1104312, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 8646 37 94.6 37 ......................TT............. TTGTTTTGTTTCTCACCTTTAATAACTACTGAATAGT 8720 37 94.6 35 ......................TT............. GGGATGTAGTTTAGATTCCTAGCGATTTTATCGCC 8792 37 94.6 42 ......................TT............. TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACAT 8871 37 94.6 39 ......................TT............. TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGAT 8947 37 94.6 36 ......................TT............. GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 9020 37 100.0 37 ..................................... GTACTAAGAGATCATATAATCCCCATCTAACCTTATT 9094 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 9171 37 100.0 36 ..................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 9244 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 9321 37 100.0 40 ..................................... CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 9398 37 100.0 39 ..................................... TGCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGT 9474 37 100.0 40 ..................................... AGAGCTATATAGACACCACATCTATCATCACCACCTAAGC 9551 37 100.0 39 ..................................... CACTTGCAAAACCACAAGAAATAAGAGAAAGAATAATTA 9627 37 97.3 35 ...................A................. GCCATAGTGTTCTCCTCTGAATAAGATTTAATTTC 9699 37 94.6 43 ....TT............................... GTTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGAT 9779 37 94.6 38 ....TT............................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 9854 37 94.6 42 ....................C..T............. ACTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAA 9933 37 94.6 0 ...................................TT | T,A [9944,9966] ========== ====== ====== ====== ===================================== =========================================== ================== 18 37 96.8 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGAGTTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTGGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTGATTTTACGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTAC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //