Array 1 729-29 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXTD01000136.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTR-SF488 NODE_136_length_12255_cov_1.24753, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
       728	    29	 100.0	    32	.............................	CAGCTTTAGCATCGGTCGACAGCCCATCTGGC	
       667	    29	 100.0	    32	.............................	CGTCCTTTACATCCCAGACCACACTAACGTCG	
       606	    29	 100.0	    32	.............................	CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA	
       545	    29	 100.0	    32	.............................	ATGAATCTGTAATTCGTTATAGCTCATCATTG	
       484	    29	 100.0	    32	.............................	ATACGCTCAACCTAGCTCTTACTCAACTACAT	
       423	    29	 100.0	    32	.............................	GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC	
       362	    29	 100.0	    32	.............................	AGAAAAACCGCTTTGTAATTACTGGTCATGTT	
       301	    29	 100.0	    32	.............................	CGTGTCAGCCAAGGTGCAACGCTACTACGCAC	
       240	    29	 100.0	    32	.............................	GAAGGTGTTTTTTATTCAAAAGATAGGATACC	
       179	    29	 100.0	    32	.............................	CCAGTTTCTAACGATATCGTCCACCAGCTTCG	
       118	    29	 100.0	    32	.............................	TATGACTAATGCACAGTTAAAACGGGTATGGG	
        57	    29	 100.0	     0	.............................	|                               	
==========	======	======	======	=============================	================================	==================
        12	    29	 100.0	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA
# Right flank :  GCAAAATGTGTTGTTATGAGATCGGAAGA

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [30.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//