Array 1 239380-238741 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000009.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 239379 28 100.0 33 ............................ CCACCGAAGCCCCACTCGACGGTCACGCCACCG 239318 28 100.0 33 ............................ ACACGCGACCGGATGCCCGGCGTGGTCAGTGAC 239257 28 100.0 34 ............................ AGTCGCGGGTGAAGCTGCGCCGCCGGGACAAGGC 239195 28 100.0 33 ............................ CGCCCACGGCCCGTCCACCTGGTCGTGGCACAT 239134 28 100.0 33 ............................ CTCCCCAGGCCACCCGCGCCGACGACTACGCCG 239073 28 100.0 33 ............................ TCCATCGTGTCCTCGCTGTCGCGGGCTCCGCAC 239012 28 100.0 33 ............................ ATGCTGGGATCGCTGTCGTGGCAGGCCGCGTCG 238951 28 100.0 33 ............................ TCCATCGTGTCCTCGCTGTCGCGGGCTCCGCAC 238890 28 100.0 33 ............................ ATGCTGGGATCGCTGTCGTGGCAGGCCGCGTCG 238829 28 100.0 33 ............................ CAGGGGCACGGGGTCCTCGTCCAGGAAATGCCG 238768 28 82.1 0 ..AG......AT..C............. | ========== ====== ====== ====== ============================ ================================== ================== 11 28 98.4 33 GATTTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : CGAGCGGGGGTGAGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCGC # Right flank : GCTGATCCCCTGGCTCCGCTGGGTCCCGCCCGAAGGTTTCCCCGCTCGCGCGGGGCAACTAGACTCATCGGGCGCTGCAGCTAGCAGTTTCCCGTGGTGGGAAACCGCTCGAGGACGTGCCAGGTGTAGTGGTGATCGGCGCGGGTGAGTTCGACCAGGCGCAGCTCAGTGATGGTGACCTCGACAGGAGTCAGTTCCCGTGCCCGCCGCACAGCGCGAATGATCTCCTCCGGTGACTGCACCCGATTGCTGTAGGCAATACCCACATGGGGTCGGTACATCCGCAGCGGGTCGATGTCGGCATAGCCCGAGGCCGTCGACACCGCGCGATACACCCCAAGCAGCGGAGACCACGGAGCAACGCTGAACCGCACAGCCCCCGGAGAACCGGCCAACGGGATCAGTTGCAGACGAAACGGCTCGATCCCACGGCAGTGTTCCCCCACGGCCCTGGCCGCGGCCCGCAACGTCGGCACGGGCACCTCATCGACATAGCCCAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 240687-239864 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000009.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 240686 28 100.0 33 ............................ CCGACGCCGCCGACTACGGCCTGTTCCCCGTCG 240625 28 100.0 34 ............................ GAGCACTGCGAAGGCACTGCGCCGGTTCGGTGAG 240563 28 100.0 33 ............................ TCCGCCGGCCCCTCGGCGTGCTCGCCCTCCTGG 240502 28 100.0 33 ............................ TAGGATAGCTGAGAGTTCGCGAGACAGGGTTAC 240441 28 100.0 33 ............................ CTCACTCGCAGTCTGGACACGGCTACGCACATG 240380 28 100.0 33 ............................ GTTCAATGCCAGCGCAACCGTGGCGACCAGCGC 240319 28 100.0 33 ............................ GAGCCGGGAGACCGCCGCGCTCGGCGAAGAGGA 240258 28 100.0 33 ............................ CGACGATTCCCCGCCGTCTGACCGGGCGTTGGC 240197 28 100.0 33 ............................ CGCTCCTTGGTGATGTGATACGTCCGTCCCGTA 240136 28 100.0 33 ............................ GCCCTCGACCCCGACGCCTCCCAGGAGGAGGAC 240075 28 100.0 34 ............................ GTCCTTGCCGACGACCTCCATGTCCATACCGGGC 240013 28 100.0 33 ............................ TCCGCCGTCGAGGCCGTCAATTCCGACGACTTC 239952 28 100.0 33 ............................ CTGGGGTCAGTGATCCGCGCACTCGACAGCGCC 239891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GATCTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : CGGCTACACAGCACCGCTGTGAATTGACCAATGAGCATTGGAACGTCAGCCCAATCCCAACGGGGCCACCTGACCAGAAGTGAAGCGAAACGCATAGCCGATACTGAAAAATGCCAAAGGAATCGGCATGCCTGGCTGGTTGCTTCTCAGAGCTCTGGTTGATCTCTGCCGACCACTGGGTCTGTTTACGAAGGTGGAACCAGTCGTTGATGGCAACGATGGTCGCGGTGCCTTCGTGGCAGACGGCGAGTCTGTCGTACCTGACGACCACGGCGCGATGGAGGTGCAATCTCACCGAGTCATCCGACCACGAGACCGCGTAGCAACCAGTGTCCACACGCTGCTACGAAACCAGCACCACCATACTGCTACACCAACCACGCTATCGATGGCAGACTGATCATCAATGCCCCTCCCCACACCTTCCGACACCCCGGCAAGTGAACACCCCACAAGATCACAAAACGATAACCCACTCTGAATTTCCCAGCACAAAAAGG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCCGCGATTTCCCCGCGCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 243716-242411 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000009.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================== ================== 243715 28 100.0 33 ............................ GTCGGCACCCAGTGGGCAGCGATCGGCCCCGAT 243654 28 100.0 33 ............................ TGCGCCGCGTCGCGCTCCTGGCGATACTGCTCG 243593 28 100.0 33 ............................ AATGTCGGCCGGGCTGTCCCAGCGGGGGACGCG 243532 28 100.0 33 ............................ CTCCGCTGCTGTACCTGCCTGAGTGGTACTGGC 243471 28 100.0 33 ............................ TCGCTAGCGTCGCGAGCAGAGTCAGCAGCGTGA 243410 28 100.0 33 ............................ GTCGTGCCGCTGGACTGGTCCAGCCCGATGAAC 243349 28 100.0 33 ............................ ACCCCCACCCAAACGGGTGGGGGCAACCTGAAC 243288 28 100.0 33 ............................ TCTGCACCCGCACACCGCGTCGCTGGAGCTGTT 243227 28 100.0 33 ............................ TTCGCCCGCATCTCCCGCGAACACAAGAACAAA 243166 28 100.0 33 ............................ CATAGGGATTGGCGGTCAATCCCTCGAATTCGA 243105 28 100.0 33 ............................ GTTTCGGGAACGGATGACAACGGCCGCCCCACC 243044 28 100.0 33 ............................ GTTTCGGGAACGGATGACAACGGCCGCCCCACC 242983 28 100.0 33 ............................ ACACCCGAAAGGGGAACACCATGTTCGGTCTCA 242922 28 100.0 33 ............................ TCGCGAGCTGCGCACGGAGAACCTCGCGCAGGT 242861 28 100.0 33 ............................ ATAGGAATCCCACGTTTTCGGGGCGCAGCGGGA 242800 28 100.0 33 ............................ CACCACTCCGAGTGATGAGGTCAGATTCTGCTC 242739 28 100.0 33 ............................ CGAGCGTGAGCAGTGTCCGGGATGCCGCGTGCA 242678 28 100.0 33 ............................ CAGGACCAGACCGAGGGCGGGGTCGGCCCCGTA 242617 28 100.0 33 ............................ CGCCTCGATCGCGGCGCGTTCGTCCTCCTGGGC 242556 28 89.3 91 ...........A............C..T ATGTTTTTCAATCCATATTGAAGCTTTAGCGGACCTTTCACCAAAAGCTAGTTGAACCCAGTGTCAGCACCGACGATCATCGGATCATCGC 242437 27 78.6 0 ..-.......TT..C.T....A...... | ========== ====== ====== ====== ============================ =========================================================================================== ================== 21 28 98.5 36 GGATTCCCCGCGCAAGCGGGGGTGAGCC # Left flank : GCGCTGCCAGCAGACAGACCCGAAGCCGTTGTTGCTCGCTCGAGAGTGCGAGGAGACCGTTCGTGTGATCCACCGGCGTCCAGAGAGATGAGCTGTGCAGAAGCTGTGGTTCGGGCCGAGCTGAACCTGCCGAGCGGGGCGGCTGTTCTCGACATCGCGGACTTTCCCACCTCCGCACAGAAAGGGCAGCTCGATAACCGTTCCCTTCGCGGTCAAGCGAGGCGCAGCCGGATCGAAGTATCACCTGATCTGCAACGACGTCAGTGTTTCCTTGACAAGGATGCTTATTGACGACGCTTCCAGCCCTGCCACCAGACCTCGTAGCAACCAGAGTTCACACGCTGCTCGAGGCCAACACGACCATGCGGCTACACGAACTACGCCTTCGATGACAGACTGATCGTCGATGCCCCTCCCCGTATCTTCCGACGTCGCGACAAGTAAGCACTCCACAAGATCACAAAACAATAACCCAATCTGATTTTCCCAGCACAAAAAGT # Right flank : CAACAGTCCGATGCTCCACTGACTTTGGTGACGTCGAGCGCGGTGGTGTGCTCGTCAGCCGACGAGCAGCATCGTAGAGAACAGGTCGCTGCTCCTCGTCCATAAAGAAGTTGGGCACGGTCATGACGTTTCCGGGTGGACCGACATGGTCTCGACATAGCGGCGCGCTACGCGGCGGCTGGTGCGGCAAGATGTCGGTTGACCAGCAGGAAACAACCCTGTGTCCAGCCGCGATAAACGTGTCGACGAGTGTGCCCATGGCTGCGGTCACCGTTCGGAGTGTCGGTGACCCCGGAATCGAGGAAGCCCCAGAAGCTGTATCCGATCCGAAGACCTGTACCCCTCGAGTTCGTCATGGCGCGTTCCCCCACCAGTTTTCGAGGCGCAAGGCATCGATGGCGGATTCGGCCAGACACTCCAACGCCATGTCCAGCGTGCCCATCCTCCTCGACACGCCTGTGACCACCAGCCAACGGTGGGTCACCGACATGGAACGTGTC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATTCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 380125-380337 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000001.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 380125 30 100.0 31 .............................. TCTGTGGCTCTTGCTCGCCGGTCGGCTCGCC 380186 30 96.7 31 .............................T CCATGAGCGTCGCGAGCTTGTCGCGTGAGTC 380247 30 93.3 31 ............................GA GGTCGCTGCCGTCGGCAGCCGTGGCCCGCTC 380308 30 83.3 0 ....................AT....GA.A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 93.3 31 GTAGGCCCCGCGCACGCGGGGATGGACCCG # Left flank : CGGGGCCGCGACTGTCGTGCGGGAAACCACCGGCCGGGGGACCTTTGGAACGGGGACTGGACACACTCACCTCATCGCTGCCGACCTGTCGCCCCCACTCCCACGATTGTGCCATTCACGGCGGCTCGCAGAGCCGCAACGAGGACGGAGCGGTGCCATGGCGGCACTGCCTCCGCTCACCTGCCCCGGCGGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCAGCCCGGCGATTTCTTGGGAAATTTACGCCCGGCCTCCCGGCCCACCTCGCGGCGATTTCGCGAGAAATTTACGCCCCGCCCACCCCGGGCCACTCCCACAGCTGACCCCTGTCGGCGCCGAGTTTCGGCGGAGGTACGGGCAGTAGAGGAGATCGCACGAGACCCGACCGGGCGGATATGTCCAATGGGATGTGACGGAGTGATGTTCACAGCGCCTTCGCCGCGCTAGAATCCCAGCGCAGTGA # Right flank : AGTAAAAGCGCCTCCGGAGTGCTGTTCCGGAGGCGCTGTGTTCGTTCGCTGGGATTCAGTCGAACCGGTCGATCTTTACCGCGTTAATGAAGGTGGCCCACTGCTGGACAGTGGTGGTGAAGTACCCGGCGGCACGATCCTTGGTGTCGCGGACCGCCGCGCCACCATCGAGACGACCGACTTCAACGCAGTTGGTCTCCTGACTGCTGTAGCTGCTCTTACGCCACGTGCTCACCGCGTGCGACAGAGTCACGTCGCCTCCAATCGTTCGATTGTCTCGGTGATGAGCTCCCTCGATTCCTCTGCACTCATCGCCAACCGATCGATATCATCCCGCGCATCAACGAATGCCGAAACGTCCCCCTCGTCACGCAGAAAAGCACTTGACCTGTGGTGTTCCAAGTGCACCACAGGCGAGGCACGCTCGAACTCCAGCAGCATGAATGGTCCGGCGTGTGCTGGAGTCCAACCGAGATGCCTCGGTATAACGCGCACTTCGA # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15202-15413 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000005.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15202 29 100.0 32 ............................. GAGCACGCATGACCGACACTCCTACACCCCAC 15263 29 100.0 32 ............................. CTCACTGCCGAAACACCGCGGATCGTGTCCCT 15324 29 100.0 32 ............................. TGCGCGGCGAACCCGTTGCGCAGTTGGGTGAC 15385 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGCTCTCCACGGGCGTGGAGGTGGACCG # Left flank : ACCGAGGGCGTCCATCGAGCTTATCCGTACGCTTGTCGAGGAAGGATGAGCACGGCAAGGGAGCATGTCATGACCACCGCTGACTTCAGTCAGGCGCGCTGGTACAAGTCCAGTCGCAGCAACGGCGGCGGTGGAGCGTGCGTCATGGTGGCGCACGTGCCCACCGCCACCGGTGTCGCCGACAGCAAACTCGGCGAAAACAGTCCCGTCCTGCCGTTCAGCAGCACCGCGTGGACCTCGTTCCTCGACGCGATCAAAAGCGACCGCCTCGACGGCTGACCCTGTTTCGTGAAGTCCCGCTCGGCGTACCGGGCGGGACTTCACGCGTCTCCGGCCACGAGGGCTGGTCGTGGTGTGCCGGGATCGAGACTTTCGGCTGCCGACGCTACGATGACTCCCGATCGAAACCGATCGAGAAGTACTCAGACCACATCCGAGGTGCGATGTCGCGGTGGCACGAAAACGTGCAACGGCGGTCATAACATCGCAGGTCGCAGAGG # Right flank : GTTCGGAACGTCCACCGGCGCCTCGACAGCGTCGCGCAGGGTCTCAACCAACGCGTGGACGGGATGGCGGCAGATGCAGCGGATTGGCCGGCAAACGCAGGACGGGGTAGCTGCCGTCCAGCAGATCGCGAACCGGCCCTGACAACGAGCGTGCAGGAAGCTCGCCCGCTACGGCTGACGGTCTTTTCGCGACGGAGTGGTCACCGATACACCTCTCGGCGATGGCCTAGTTCGATCACGGTCACCAACAAGTGATGGTCTTTGATCGTGTAAAGCACCCGATATTGGCCGACTCGGATCCGCCACGTATCGCTCACCCCGGAGAGCTTGCGGCAACCATCGGGGCGGGGCTCGTTCGCAAGGTTGTCGATGGCGAATTCGATTCGACGGCGCGTTTGGCGATCCAGGTTCGCCAGAGTTTTCTGCGCGTTGCGCGTGATGTCGATGTTGTAGCTCACGCCTCCGCTTTGCCCTCCAGATCCACCAGTGCCTGTTCCCAC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 211460-211673 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000005.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 211460 30 93.3 31 ............................GG TCCAGCCGCTGTTGCAGCGGTTCGCGGACGA 211521 30 100.0 32 .............................. AGTCGACGTCGCAGGCTAGCCCCATAGAGGCG 211583 30 90.0 31 .......................A....CA GCGGCTCTCCGGTGTCGTAGTCGGTCTGCTG 211644 30 90.0 0 .......................T.G..G. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 93.3 32 GTAGGCCCCGCGCACGCGGGGATGGACCAC # Left flank : GCGTGGTCGTTCTTCGTGAACATCGCGGACGCCGCGTCCCCCGAGTTTTCGATCGGTCTCGACGGCGACCGTGGCGTCGTCACGTGGTGGGACGGGCAGGATTCCTTTCGTCCGGCGCACGGGACGAACACCGAGCCCGTGGACTACTGGCGCGGTGGTCACCACTCCCAGCTTCCGGAAGGACACGAGATCAGCGCCGACGACGCGCTCACGGCCCTACAGGAATTCCTGCGCACCCACGAACGCCCGACCAACATCGAGTGGGTGTGGGACTGACCTGTTCCGGAAGAACGAGGCGCTTGCCGTCGAACAGCACGATCCACCCGTCCAATTCAGTCCACAGTAGTCACGCGATGGCTCGGCGCGAGGTCTCACTCCGGAGTTGTTCCGGAGTGATCAGGCGACACGAGACCGAGCTCCGCCGCCACGAACGACCAGAAAGGACACACGAAGTGGTTCTCACAGCGCCTTCACCCCGCTAGAATCCCAGGTCAGTAAGT # Right flank : CCCGCATAAGCCCGCGAGAGCACCTCGACACCGAGGTGAACGGGCGGGGCTCACACGAAAAAGCGCCTCCGGAACGACTCCGGAGGCGCTGGACTTCACACGCGAAAGTCAGCCGAACTTCTCGGCCTTCACCGCGTCGATGAACGCCGACCACTGAGCACCAGTCGTAGTGAAGTACCCGACCGAGCGATCCTTGGTGTCACGCACCGCCGCGCCGTCGTTGAAGCGGCCGATTTCGACGCACGCAGTGTTATTACTGGACCGGCTCGACTTCCGCCATCCTGCGGGATGTTGTTTCACGGTATGCTCTCCTCGAAATCGTTTGCGCGTGCGGCGACGAACTCCTTTGCCTGTTCCGGGGTCATCGCTGCATCGCGCAGGTTACCTACAGCGTCCTTGTAAATCTCTACGGCGTGGGGAGCTGTGAGGAACGCAGCGGACCCGAGGTGTTCGAGGTGCACGATCGGCGCGGCGCGAGGGAACTCGATCAACATGAACTG # Questionable array : NO Score: 3.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22855-22275 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000022.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 22854 28 96.4 34 ...G........................ ATTCGGGCAGTGCCCTCCCGACGGCTTCCGGCAC 22792 28 96.4 33 ...G........................ TCGTATCCGCCCCGTCCGAACGCGCCGATCAGG 22731 28 96.4 33 ...G........................ CTCGAAGCCGCTGCGTTCATCAGCGGTTCCGGC 22670 28 100.0 33 ............................ GGGGTGATGGTCTATCGCCGGGTGTGGGGTTTT 22609 28 100.0 34 ............................ ATCTGCCGTTGCCTGGTTTTCATCCAGTCCACGA 22547 28 100.0 33 ............................ GACGTTCGGCATCAACTGACAGACCCAGATGCC 22486 28 100.0 33 ............................ CTGCGGCCGACGGCGGGTGGCGCCCCACCGCCG 22425 28 96.4 33 ...G........................ CAGCACCTTCTTCCACGCGATCTGAGACCACTC 22364 28 100.0 33 ............................ TGATGGATCCGATGCGGTTCGCTGCCTCGGCCG 22303 28 82.1 0 ...C.......G..A..A.....A.... | T [22282] ========== ====== ====== ====== ============================ ================================== ================== 10 28 96.8 33 GAATTCCCCGCTCGCGCGGGGGTGAGCC # Left flank : CGTCCTCAACGGCGGCACCGCACCCCCGAAAGATACTCCCACCGGAGTGGTCGACCTGTGGGATCCAGACACCAACGTGCCCGCCGGGGTCAACTACGCCAGCCTGGACGAAAACAACGATGGCCCGGAATTCTGATGAGCACCTTCGCCGTTATCACCACCAGCGCCGTCGCGGACGGCACGCGCGGAGCCCTGACCCGCTGGATGCTCGAACCTGCCCCAGGAGTCTACGTCGGCACACTGACCAACCGTGTCCGGGAATACCTGTGGGAAGCCGTCTGCGAGAGCATCGACGACCAAGAAGGATGGGCCGCGCTCATCTGCAACGCAGACAACGAACAAGGCTACAACATCCATACCCACGGTCCCGGCACTAACGGCCGAACGATCACCGACCTCGACGGCCTCTCGCTCGTGTCCTGGACTCTGACCCCCGAGACCTCCCCCAATCAAGAAGTCACAAAACAATAAAGCAACCTTGTTTTTCCAGCACAAAAAGG # Right flank : CGTTCCTCTGAGCGAACCAGCAGCACGACCCTCCTGATCAGTGATGGGGTCAGAGTCGTACTTGCTCGGTGAACGAGCGACAAAGGCAATAGCATTGGAAACAGTTGGACCGGTGGCACGGGCGGCAGAAATCGAAAAACAGTTCGCCCGCGATAGCGGAGCTGCGGTGACGCGTGGGAATCTGGGCGTTGCGTGTGTACTGGGTTTACTGGGTGAGTCAGTGGATCCCAGTGACGAGCCTGGATGCCGGTCCGGGGCGATACCGAGCGCAATACCCCGGCTGACGGGACGAGAGCATCCAGCACAACTGGGCCAGCTCCGACCACAAGTAAATACGTCGACGGCGAGGCAGAGTTCTCACCACGAGGCTCTGGAACGGATTCACGCCGTGTCTCTGAATCACACGGTTGCGAGGGATACCTACGAGCCGCCACTCGATGTGACCGACGAACCGGGGCCCACAACGAGGATTTCGATGATCTATGCGGTTGTCGAACGGA # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTCCCCGCTCGCGCGGGGGTGAGCC # Alternate repeat : GAAGTCCCCGCTCGCGCGGGGGTGAGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCATGCGCGGGGGTGAGCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 32493-32023 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000022.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 32492 28 100.0 33 ............................ CAGGGTGTCCACCCCGAGCAGGGTGTCGCGCCA 32431 28 100.0 33 ............................ TCCGCGGGTGGTGGCGACGTGGGATCAGCGGCC 32370 28 100.0 33 ............................ CCCCTGCAATGGGGGTATTCCACCACGATCGAT 32309 28 100.0 33 ............................ CATGGTCGCCGCCGTCCGCGCCGACCGGAAACG 32248 28 92.9 33 ...T..........G............. CAACCTCCACGGGTGAAACAGAGAGACCGGGCG 32187 28 96.4 46 ...T........................ CTCTGGCGAGGCCGTCTCGCTCGCCGCGGGCGCGGTGGTCGGTCTG 32113 28 96.4 34 ...T........................ AGAGGGGCGGGAGCTCCAGCAAAACCTGATTGAC 32051 28 89.3 0 .G.T.........A.............. | G [32025] ========== ====== ====== ====== ============================ ============================================== ================== 8 28 96.9 35 GATCTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GCAGACTGATCATCAATGCCCCTCCCCACACCTTCCGACACCCCGGCAAGTGAACACCCCACAAGATCACAAAACGATAACCCACTCTGAATTTCCCAGCACAAAAAGGGATCTCCCCGCGCGAGCGGGGGTGAGCCCCGACGCCGCCGACTACGGCCTGTTCCCCGTCGGATCTCCCCGCGCGAGCGGGGGTGAGCCCATCGAGTGATGATCCACCTGTCCGGCGTTCCCGGATCTCCCCGCGCGAGCGGGGGTGAGCCTAGTCCCGCCCGAACTGCTCGTTCCCGGCTGTGGATCTCCCCGCGCGAGCGGGGGTGAGCCCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AAAAACGCTCTGAGTCACCGATAAATGACAGGAAGCATTCGGCCTCTGACAGTAGTGGCACGCTGAGGTACCGCCACCACCAGAGGCCGCTTCCGCTCTTGTTAACCGTGGTTTACCCCCACTAGCGCACAGAGTCCTGATCAGGTAATTCGGTCCATGATCAGACCCTGCTGCGCGGCCGTGGGGAACTGCGACAAGACACCTCTCGTCAAACACTCAATCGGTACACCCCCACCGGGTGGGGATTTCCCAAGGGTAGTCGAACAGGAAGCCAGCAAGTACCTCCGTCCCCTCAATGGGCGCATACCGTACTGCTTGTGGGGCAATAAGGAGACAATCCTGGCACACTGGGCTCTTCGGACAGAGCTAGCAGCTCCGTTTGATATCTACCCCCTTGTTCACCCCGCGTGCTCAATCAGCTACAGTAGCTTTCAATCAAAGATTGACTGTTTTACAAGAAACCTGGGGCTCAATGCATTTATACGTGTGGGGCAAGTCGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTGCCCCGCGCGAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 32885-32672 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOMZ01000022.1 Actinopolyspora alba strain DSM 45004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32884 29 100.0 32 ............................. CCGACGCCGCCGACTACGGCCTGTTCCCCGTC 32823 29 100.0 33 ............................. CATCGAGTGATGATCCACCTGTCCGGCGTTCCC 32761 29 100.0 32 ............................. TAGTCCCGCCCGAACTGCTCGTTCCCGGCTGT 32700 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 100.0 33 GGATCTCCCCGCGCGAGCGGGGGTGAGCC # Left flank : GCGGCTACACAGCACCGCTGTGAATTGACCAATGAGCATTGGAACGTCAGCCCAATCCCAACGGGGCCACCTGACCAGAAGTGAAGCGAAACGCATAGCCGATACTGAAAAATGCCAAAGGAATCGGCATGCCTGGCTGGTTGCTTCTCAGAGCTCTGGTTGATCTCTGCCGACCACTGGGTCTGTTTACGAAGGTGGAACCAGTCGTTGATGGCAACGATGGTCGCGGTGCCTTCGTGGCAGACGGCGAGTCTGTCGTACCTGACGACCACGGCGCGATGGAGGTGCAATCTCACCGAGTCATCCGACCACGAGACCGCGTAGCAACCAGTGTCCACACGCTGCTACGAAACCAGCACCACCATACTGCTACACCAACCACGCTATCGATGGCAGACTGATCATCAATGCCCCTCCCCACACCTTCCGACACCCCGGCAAGTGAACACCCCACAAGATCACAAAACGATAACCCACTCTGAATTTCCCAGCACAAAAAG # Right flank : CAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTCCCCGCGCGAGCGGGGGTGAGCCCAGGGTGTCCACCCCGAGCAGGGTGTCGCGCCAGATCTCCCCGCGCGAGCGGGGGTGAGCCTCCGCGGGTGGTGGCGACGTGGGATCAGCGGCCGATCTCCCCGCGCGAGCGGGGGTGAGCCCCCCTGCAATGGGGGTATTCCACCACGATCGATGATCTCCCCGCGCGAGCGGGGGTGAGCCCATGGTCGCCGCCGTCCGCGCCGACCGGAAACGGATTTCCCCGCGCGGGCGGGGGTGAGCCCAACCTCCACGGGTGAAACAGAGAGACCGGGCGGATTTCCCCGCGCGAG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCTCCCCGCGCGAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.00,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //