Array 1 199976-205552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIH010000003.1 Listeria seeligeri strain FSL W9-1176 NODE_3_length_436447_cov_92.555256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 199976 36 97.2 30 ..C................................. CGGCCATACCAATTGCAGATGCACATATAT 200042 36 100.0 30 .................................... AGAGCTTTTCCAAATTGGCTTTTCTTTTAA 200108 36 100.0 30 .................................... TCGGATAGAAATCACTTGCTTAAACTTCGA 200174 36 100.0 30 .................................... TAGTATCACTACATCATGTTGCATGTTCAG 200240 36 100.0 30 .................................... AATGCGTTAGCATAAACGGAAATGCCTAAA 200306 36 100.0 30 .................................... CTTCCTTCTGCGTTAGCGTCCCCTTTTACT 200372 36 100.0 30 .................................... TAGTATCACTACATCATGTTGCATGTTCAG 200438 36 100.0 30 .................................... ATGACGAGCTAAAGGAAGTTTTTGACCCGA 200504 36 100.0 30 .................................... ACTCTCCTTCCGTATCGTGAATTGCCTGGT 200570 36 100.0 30 .................................... TGTTTAAGGTATTCTTGTAGTTCTGCTAGT 200636 36 100.0 32 .................................... CCGTGCCTATCATGGCCGTGGGAGCGGCGGCA 200704 36 100.0 30 .................................... GTTACGCGCTCTCTTATTCGCCCGTCAGTT 200770 36 100.0 30 .................................... AAAGCGAAAGCTGAACGTGCTGACGCTGTT 200836 36 100.0 30 .................................... AAAGCGAAAGCTGAACGTGCTGACGCTGTT 200902 36 100.0 30 .................................... CGAAAGCGACCGATGGTTACGACATTAATT 200968 36 100.0 30 .................................... CTTCATTTGCAAATGAATCCTTCTTCTGGC 201034 36 100.0 30 .................................... GATGCGGAATGGCAAGTTTGTAACAGTAAA 201100 36 100.0 30 .................................... CTGATATTGACGTGGTAGAAGATACGTTTA 201166 36 100.0 30 .................................... TTTCTTCTCGTTTGTCTTGCTATTCATAAG 201232 36 100.0 30 .................................... GTATGCGAATGAGACAGATACAAGGAGGAA 201298 36 100.0 30 .................................... AGTATCTACAGTGGCTATTGCGTAATCTAC 201364 36 100.0 29 .................................... AGACTGCCACAAAAGGAATCGGCGCTTTT 201429 36 100.0 30 .................................... AAGGACTATGATTCAAGAACTGAATAAGTC 201495 36 100.0 30 .................................... CTTCATTGTCATCTGCTGTATAACTTAATG 201561 36 100.0 30 .................................... ACGCAACGAATCAGAAAAAAACACCGCTAT 201627 36 100.0 30 .................................... AAGCCACGTGTAAATAAGAAACTTCCCAGC 201693 36 100.0 30 .................................... ACTAGCTTTGAAATCACGAATCGAGGGATT 201759 36 100.0 30 .................................... ACCTTACTACCAGAAGAGCAAGTAATGAAT 201825 36 100.0 30 .................................... AAAGATATTATGTTTCAAGATGATTTTGAT 201891 36 100.0 30 .................................... AGACCGTAGCGGGCATTATTCAGGGGTTTA 201957 36 100.0 30 .................................... GGCTAGAATCATATTGTGATGGCTATGTTA 202023 36 100.0 30 .................................... TATAGAAAGCAACTCTTCCATAAGATTATG 202089 36 100.0 30 .................................... GTTATGGAGGGAGATTAAAAGATGTATTAT 202155 36 100.0 29 .................................... GAGGAGCAAACTGGAATGAAGGTAGTCGC 202220 36 100.0 30 .................................... TCCGCATCAAACAATACGAATGGCAGACAA 202286 36 100.0 30 .................................... TTTGTAGAGGTCCATGCGGTTGATTTTTGC 202352 36 100.0 30 .................................... CGGGTTAGATATACTTGTTTTCCCGGTTGT 202418 36 100.0 30 .................................... CAGACAGACTAACAAACTCAACATTGTTTT 202484 36 100.0 30 .................................... ATCTTGATTGCGTGAATGAATACGAGGACG 202550 36 100.0 30 .................................... GCCTGTTCCGGGCGTTGTATAGTTCCTAAA 202616 36 100.0 30 .................................... GATAGAGTTCTCCGATGGAGGATTGCACGG 202682 36 100.0 29 .................................... GTACTTGCTAATATCATTTTTTTAATGAT 202747 36 100.0 30 .................................... GAACGATTGATAATTATCTTAAAAAATATG 202813 36 100.0 29 .................................... TACTTTTTACAAAGTTTTGCGCGCGCTGT 202878 36 100.0 30 .................................... AATTCCCAACACTCATATCCAAATTTATTT 202944 36 100.0 30 .................................... TAAATTCAAAATTAATATTTTGGACTTTGT 203010 36 100.0 30 .................................... GTTAGGGTGTAACTAATGTATCAATAACCG 203076 36 100.0 30 .................................... TAATGTTTTCACCTTCCAATAATGTGGGAA 203142 36 100.0 30 .................................... ACGTTGGGATAATTTTTTGCTGTTACAGTA 203208 36 100.0 30 .................................... GTGGAGTTAGTGCCTGTAGAATACGCTGTT 203274 36 100.0 30 .................................... TGACGTTTGTATACTGCCCAACTGTTTTCG 203340 36 100.0 30 .................................... TTAATCGCATTTATTGTGGCTTCCTCTTGA 203406 36 100.0 30 .................................... ACACCGTCTTCTTTTTTCATAAATCCGCCC 203472 36 100.0 30 .................................... GCTAAAAATTCAATATGAAGGGCATTCTAT 203538 36 100.0 30 .................................... ACTCTTCCCAATCAACTTTTTTCCCTTTTT 203604 36 100.0 30 .................................... GTCTACTTCATCCCCGTTTACTGGTCGAAA 203670 36 100.0 30 .................................... TAAAAGAGCTCACAGAAAAACGTTTAAAAG 203736 36 100.0 30 .................................... AGGAAGGTAGCTGATACTTTGAGGAACACC 203802 36 100.0 29 .................................... AGGGGGGTCAATAATGACCTCTCTTTTTT 203867 36 100.0 30 .................................... CATTAGTATCTTTCAGCCCCCTTACTTTAT 203933 36 100.0 30 .................................... GAGCCACACCAAGTCACACTTGGAGACACA 203999 36 100.0 30 .................................... CGTGCTTGGAGATGAAAAAAGCAGACATTA 204065 36 100.0 29 .................................... ATGCTGACAATGTATCAGCACTGAAATTA 204130 36 100.0 30 .................................... ACGTTTATGGGGAGGACAATCTTGATAAGG 204196 36 100.0 30 .................................... GCACCTCGTGAGAAAGGGGTGTGACCCGTG 204262 36 100.0 30 .................................... CGCTTACCTTCATTTTTGATAGTTCTCATC 204328 36 100.0 31 .................................... TTAACGTCCGCTATGTGGTTTCAGACGGAGA 204395 36 100.0 30 .................................... TTTAGTCCCTGCTGGTACAAGACTTAAGGC 204461 36 100.0 30 .................................... ATACTCAATGTAGCACAACTAATCAAAAAG 204527 36 100.0 30 .................................... CTTGATTTAATGACCACGTTGGTCGCATTC 204593 36 100.0 30 .................................... AGGGATGTTTAACGTATATCACTACGTTGC 204659 36 100.0 30 .................................... AGGCATTTGAGTAAGAAAGCAAGTAAGACG 204725 36 100.0 30 .................................... CTCCTAACATATCCATCGCCCATTTACATT 204791 36 100.0 30 .................................... TGCGTTGATAGTAGTAATATCCTCTTTACA 204857 36 100.0 30 .................................... TAGATGGTAGTCATACTAACTTTTTTTATA 204923 36 100.0 30 .................................... CTGCCCACGACGGATGAGGCGTTTTTCTTC 204989 36 100.0 30 .................................... ATATTGACAAGTGAATATCCAGCTTCATAA 205055 36 100.0 30 .................................... CAAGTAAAGGAGTTCTTTTTATATACTTAA 205121 36 100.0 30 .................................... TCTCGCCAAAATCCGAATCAGTAATCTGAT 205187 36 100.0 30 .................................... AACCAGCTTTGAATATATTCTGCATCATAC 205253 36 100.0 30 .................................... AACAGGCCTGTGTTTATATTCAACTTCGTC 205319 36 100.0 30 .................................... AACACGCATCACAGTGCATTCATTGAAGCG 205385 36 100.0 30 .................................... AGTCTGGTCTCCCGCTCACGACCGCTAAAG 205451 36 100.0 30 .................................... GATGAGGGAGAGTATCTAAAGGAAGGCGAG 205517 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 85 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : GAGGCATGCCCGTGATTGCCAGAAAAAAGTTCGCCACCATAGACGAAACCACCGCCAATACCTGTACTTACGGTAATATATTGGACACTGTCATATCCTCGCCCCGCGCCAATTCTCGCTTCAGCAAGTGAGGCAGCTTTGGCATCATTTATCAAAGAAACAGGCATACCTACACGACTCGCAAGTTCATCTTGAATCGAAAAACCGTACCACCCAGGTAAATTTGGAGCATCTAAAAAAATACCTTTCGTCACATCAAGCGGTCCAGGAGCGCCAATCCCAATCCCAATTGCTAAGTGTTCTGGGTCCACTTTCCCGACCATTTTCACCAACTTTTTTAGTGCTTGAACTGGTCCTAACACAGCTTCCGTTTCGACTTGTTCGCGTGCCACCAACTTTTTCAAATAGAGACCCGGTAATGGTTTCAACTCGTCATCGAAATAAAAATACATTTACATATTTTCATCAGTCACCTAACATCATTTTTGTTAAGTGTTGAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCGGGAATTCCTTTGTAGTCAACGATAATTCGCCATTCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCCAACTTTAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATTGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTGCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAACAATATCACTAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTAATTGAAATTTCTTTATTCCCGCTTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGCTTATTAAATAATTCTTTTGCATACAGATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 229307-228630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIH010000003.1 Listeria seeligeri strain FSL W9-1176 NODE_3_length_436447_cov_92.555256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 229306 29 100.0 36 ............................. TCGGATACCACTCAAAAAGCAAATGCAGTACTGCAG 229241 29 100.0 37 ............................. AAAGTAGTATCTAACTCATTTATCATCCACTCCTTCC 229175 29 100.0 38 ............................. ATATTTTATAACGCAAAAGGAGACGGAAAACGACCTGC 229108 29 100.0 36 ............................. CAATGAAATTAAGTTTGTCTAAGCTGTCATTTTCGT 229043 29 100.0 36 ............................. AAAAAAGACAGGTTCAATGTATACGATGAAGTTAAG 228978 29 100.0 35 ............................. AAACTTGTGCTTAAGGTGCTTTTTAAAGTTTCTTC 228914 29 100.0 35 ............................. GCAAAATTCATACCCTTACTAAGCGTTGTATTAGG 228850 29 100.0 34 ............................. AAACGAGATTCGGAACACTAGTTGTTTCTTTGTC 228787 29 100.0 36 ............................. TTGAAGTAAGCATTGAGAAAACCTAATCCCCCATCG 228722 29 100.0 35 ............................. CTGTTTTTACATACTTGAACAAACAGCTCGAACTC 228658 29 96.6 0 .......C..................... | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCACTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : TTGAGTTTAAGGTTACGTTCCTTTTTACTAGCTGCGATAACACCCATTCCCCGTCATAACAGGAAAAAATACTAGGAGATGATGCTTTGATTATTGACGTTCTACAACATGTGCCGCACGAAGGACCAGGACTTATTGCGAAATGGGCGAAAGAAAATCAACATCAATTGAAAGTTCATAGTTTATTTAATGAAAAAGATCAAGTTCCAACTGATTCGGAATTTTTAATCATTCTAGGAGGACCAATGGGAGTGAGTGATACCGCTGAATTTCCATGGTTAGAAGAAGAACGAGATTTGATAAAACAACTAATTGAGCAAAACAAACCGGTTTTCGGTGTATGTCTTGGAGCGCAACAAATTGCGACAGCGCTAGGAAGTACTATTTCGATGAATAGTGAAAAAGAAGTAGGCTGGTTCCCAGTTAACAGAATCTTCACTGAACTATCATTTTTTCCAGAGCGAATAGATGTTTTTCACTGGCATCAAGAGACTTTTTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 201146-200450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIH010000005.1 Listeria seeligeri strain FSL W9-1176 NODE_5_length_290347_cov_75.251318, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 201145 36 100.0 30 .................................... CAGGTGCAAGAACACATGGGAATGTCAATG 201079 36 100.0 30 .................................... ACATTTATTAGGTAATATCATGCACACCAC 201013 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA 200947 36 100.0 30 .................................... ATGTAAACAGTTTGCTTCGTGGCGACATGG 200881 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 200815 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 200749 36 100.0 31 .................................... CAGGATATGGTGCCGACCGGAACAGTTACTT 200682 36 100.0 30 .................................... AGTAGGATTCGCCTAATTGCTAAGGTGATA 200616 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 200550 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 200484 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 98.5 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAACTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TCCTACTTAATAATAGTAATTAAAACAACAAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGAGAATGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGCTAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 54054-55805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIH010000011.1 Listeria seeligeri strain FSL W9-1176 NODE_11_length_61121_cov_104.274130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 54054 36 100.0 30 .................................... TGGTAGCTTTGCAGAAAATATTTAACCACA 54120 36 100.0 30 .................................... TCATATAACCCTCCTCGCAACCCTTACTCA 54186 36 100.0 30 .................................... TTTTGATACAGAAGATGAGGCTATCGAGCA 54252 36 100.0 30 .................................... CCCTCTCACTAAGCGAAAGATTATCGTCCA 54318 36 100.0 30 .................................... GAAGCAAACGACTTTATTTAAATGATGAAA 54384 36 100.0 30 .................................... TGAAGCAAGCCATTCTTCTGCCGTCTCTTC 54450 36 100.0 30 .................................... AAGCGAGAATATTATCTATTTCTTGCGCGT 54516 36 100.0 30 .................................... TTTTGTAGCGAAACCTAAACCAAGAGCAAC 54582 36 100.0 30 .................................... TCATTTTGGGCCAATCCATCGACTCGTTTT 54648 36 100.0 30 .................................... ATTAAGTTTTTAGAAGGAGAGCAGCATTCC 54714 36 100.0 30 .................................... TTGTTACAATAAAGCCCTTAACACCTTTGT 54780 36 100.0 30 .................................... AGATTACTTTTTCACTGTTTATATGCGCGA 54846 36 100.0 30 .................................... CCCCTTCTCTGTCGTCCTTTTTCGATAAGT 54912 36 100.0 30 .................................... AGAAGCTTCAATGTTTGAAAGTGATGATGT 54978 36 100.0 30 .................................... AAGCAACAATGAGTGAGCCAGTTATGATAG 55044 36 100.0 30 .................................... GCTAAGTAAGCAAATCATTCACTTGATGGA 55110 36 100.0 30 .................................... AAAAATATTTCTCAACGCGAACTAGCCAAA 55176 36 100.0 30 .................................... AATATCACTAATTAACCGTTCGCTCATTGC 55242 36 100.0 30 .................................... TGGTAGCGGCGCTTAACGTTCTCTCCTAGG 55308 36 97.2 30 ..........C......................... TGGGTGAACGATGAACGTTGGTGACACCCC 55374 36 97.2 30 ..........C......................... AGAGAGACTCGTATACTCTGATATCTTTCC 55440 36 100.0 30 .................................... TGATTCTGTTTTTTTATTCTTCCATCCCGT 55506 36 100.0 30 .................................... TTGTGATTTGCCATCATCAACAAAGTCACA 55572 36 97.2 30 ....................G............... AAAACGATAATTTTTACCAGTTACATAATT 55638 36 100.0 30 .................................... TGTTTTTTAGGTTTTACAACCTGTTTTTTT 55704 36 100.0 30 .................................... GATGTTTGGCCGCATTATCTAGTGCAAGTT 55770 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 27 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATATGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGAAGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACTGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATTTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACTGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGGGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //