Array 1 954674-955033 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 954674 30 100.0 36 .............................. AATTTTAATTGGCTATCAAATACTTTTTTAGAACTC 954740 30 100.0 36 .............................. GGCATCATTAAATTATAATATTTAATAAATTCTTCT 954806 30 100.0 36 .............................. ACGTTATTTTTACCTTCATAAGCTTTTAATAATTTT 954872 30 100.0 36 .............................. TTTGTAAACCCTTCTTCCTCTGTTGTTATTATTAAA 954938 30 100.0 36 .............................. CTATTTCTAGCCATTCTCTCTATATCAAATGTATCT 955004 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAATATGTTCTTGGTTAAACCGTAAAGATGAACTTGTAGCAGCAGTAGCTATAGGATATGTAAATCAACCCCCTTATCCACGTCCACGTAAACCGTGGAGAGAAGTTACAGAATGGATGAGTTAATACATTTAACATCAAACAATAAAAACGGAGAATTATTTTAAATACCGTATTATTTATAATTGAGTTCCATAGTGTTTTTACACCGCAATACAATTATATTGCAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTGCTTACTCATTTGAGGAAGCGAGAAGGCGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGATTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTGAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATCAGGAATGGCTATTTTACTATG # Right flank : TATTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTATTGACTTGTTAGTCTAAAGCTACACCATAAGAAAGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATCTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGTAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 962248-963061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 962248 30 100.0 36 .............................. TATCCTAACAACTTCAATACATCTTTTTTAGATTTT 962314 30 100.0 36 .............................. AAAAAAAAGTAAAAAAAATGAAGAGGAAGAGTATTT 962380 30 100.0 35 .............................. AAAATTAAGTAGTAGGATGGAAAGATTCCTAGGAG 962445 30 100.0 35 .............................. GGCAAAACATTTAATGCTTGGGCATAAAATTCTTT 962510 30 100.0 34 .............................. TATCAGTTAACATCTCAATCACTCCCTTGGTTTT 962574 30 100.0 36 .............................. AGAAATAGTAAATGGTAATCAATTAGATAATAAGAG 962640 30 100.0 36 .............................. AAAATTATATTCATGTAGTTAACATGGTGAATGATA 962706 30 100.0 36 .............................. AATTTCACATGAGCTATTAAAGGTTGATAATAAGCT 962772 30 96.7 35 .................G............ ATCTCAGAAGGTGTAAAATTATTACTTTCTGATAA 962837 30 96.7 35 .................G............ CTTTTCCCGGAAAGAAAAATCCAAGACATAGAATT 962902 30 86.7 34 ........TC......AG............ CCGAGTACTGGAACTTTATCTTCTAATTTAATAT 962966 30 90.0 36 ........T.......AG............ CAAACAATAATTCCATCAATTACATTATTATTTTTT 963032 30 86.7 0 ................AG..........GC | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 96.7 35 GTTGAACAATAACATAGAATGTATTTAAAT # Left flank : TCAGCAAGAAAACAGATGAAGGATTTGTTTTAAATACAAATGGAGAAGAATCAATTATTAATGCTGATAGTGCTGTTGTAGCTATTGGATATTTATCTGAAAAAGACTTATATAGTGAAGTTAGATTTGATATTCCAAATGCAAGACTAATTGGAGATGCTAATAAAGTTCAAAACATTATGTATGCTATTTGGAGTGCATATGAAGTAGCTAAAAATATTTAAATAAACTTTTGCAAAAAACTAGAATGGGTTTATATCCATATCTAGTTTTTTGTTTTTTACTTAAATTCTATAAGTATATGAGTGTTTGTCAGGCTATATTTTCCCAAACGAATTCAAATTTAAAGCTTATTCTAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGAATTTTTAAAAAAGTAAAATCACTTGGAAAAATTTCTGTGAAATCTTGTAAGATCAATGGTTATATGATATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : CAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATGGCTGAACCTTAACATAGGATGTATTTAAATGATATTATTGTTACATTCTTAAAAGGTTCATCTTTTGTTGAACCTTAACATGAGATGTATTTAAATTAATTAACTGTTTTATCTGGTGTATATGTGTTCCCGTTGAACCTTAACATGAGATGTATTTAAATTGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAAGTTGAACCTTAACATGAGATG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAGAATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 3 963342-963881 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================================================================== ================== 963342 30 90.0 36 .C.............AG............. GATATTATTGTTACATTCTTAAAAGGTTCATCTTTT 963408 30 100.0 35 .............................. TAATTAACTGTTTTATCTGGTGTATATGTGTTCCC 963473 30 100.0 37 .............................. TGGCAAAATGTTTTGAGAGTTGCCTGTCCTGGAATAA 963540 30 100.0 36 .............................. ATATCTATATAATTAAAATCAGCAAATTCCTTTCTC 963606 30 90.0 36 .......AG......A.............. GAATCTATAGTAGTTTCATTTGTTAAACCAGACGAA 963672 30 90.0 115 .......A....................GC AGAGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTCATTCGAGGTGAGGAGAATGAGTTTCATAAAACAATCAAAGCTTTATTATTTTAAAATTAAATATGCTTTTAAATC 963817 30 86.7 3 T................A........T.C. ATG GC [963837] Deletion [963852] 963852 30 80.0 0 .......AA......A..........G.GC | ========== ====== ====== ====== ============================== =================================================================================================================== ================== 8 30 92.1 43 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACAATAACATAGGATGTATTTAAATCTTTTCCCGGAAAGAAAAATCCAAGACATAGAATTGTTGAACATCAACATAAGATGTATTTAAATCCGAGTACTGGAACTTTATCTTCTAATTTAATATGTTGAACATTAACATAAGATGTATTTAAATCAAACAATAATTCCATCAATTACATTATTATTTTTTGTTGAACAATAACATAAGATGTATTTAAGCAGGAAACCCAAATCTTTGATTTGGCATGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGCATAGTATATATTTTATATATAATTAAATTTCCCCAAGCGAATTCAAATTTAAAACCTATTCTAGCCATTGATATATAAGGATTAGGATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGAGAAAATTTCTATAAAACCTTGTAAAATCAATGCGTATATGTTATTCTTGAAAATAAGGAATGGCTATTTTACTATG # Right flank : CATAGAACCCCAATCTGTGATTTAGGGTGAATCTCTTACTCATTGAGATATGGAGAATCAGTTTCATAAAACAAGTGAATCTGAGTAGATTTTTATTGACTAAAGTATTTTTGAAATTTAGTTTTAAGTTTAGGTTGTATTTTAGAGTGCTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTTCTTTTAATGGGGGCTATATAAATTGCTAGATACTAATTATTTAAAAATTTATTTAATGAATCATTGTCTTTAAATAAGTTTTCTAAGTTCCCATATTTTTGTTCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTGGCTACATTAAATTTAATAATTTCAGCGTTTGGTATAAGAGATAATAATACCACTGAATTCTTTTCTAAAAGCTTGTTAGCTTTTTTGTCACTCCAAAATTTATTATAATTTTCTTCACCTAAATTTTCATTTGCTTTATAGTTAACAGTTATTTCATATGG # Questionable array : NO Score: 4.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.53, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 4 969261-969817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 969261 30 100.0 35 .............................. TCGAATATTAAGCACGCACTACGCTTACCATCTTT 969326 30 100.0 36 .............................. ACGACTATTCCTCTTGAGGGAAGTAGGTATAAGCAT 969392 30 100.0 35 .............................. AAAACTTATACGCCCTAAAAGAACCATTACTTTAA 969457 30 100.0 35 .............................. GAGGTTCAAATCCTTTTATCTCCAAAGGAATTCCG 969522 30 100.0 36 .............................. TTGGTACAATTATAAAGAGTTGAAGATAAACTATGA 969588 30 100.0 37 .............................. TAAATTTTAATAATATTTCCTTTTGAATCTCTTATAG 969655 30 100.0 35 .............................. TAAGGTTACAGAAGCTAATGATAGAATGGAATTAA 969720 30 100.0 38 .............................. TAAATTAGGCTATGAAATAAAACAAACAGTGGGAGAGT 969788 30 90.0 0 .......................C.G...A | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.9 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : TATTTACAAATTAAAATTATTTATGCAATGGGGGAAAAAATGATTTTAACCATTGATTGTTTTAGATATATGTATTTTTTGTCACAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGAAATCCATGGCATCATATAAAAGGAGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGCTTCATTTCATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTTAGATTTGGTGTAAGTCGCTTACTCCTTGGAGAGTAGGATAAAGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGCTTGTTTTATGTATTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAGAACCTTGTAAAATCAATGGCTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : AAAACAAATAACGATGAAAAGATAACAAATAATAATTAAGGTGGTTTTTCATTGACAAGGTTTTTCAACATTTTGAAATTGAAAAACTAACAGCAAATATTATACAGAAAACTATAGAGAATCAATTATAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTTATAGAATTTTATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTAAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 5 970730-971607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 970730 29 100.0 37 ............................. ATTTTATGGAGGTTATCAAAAGTGAGTTGGGAGGACG 970796 29 100.0 36 ............................. AGGTATAGAAAAAATAAAGAAAACAACAGAGGAAAG 970861 29 100.0 37 ............................. TTAAACAGTTTTTTAGCCTCTTTGACTGTGATTGTAG 970927 29 100.0 36 ............................. AAAAATTTTAAATATGATGATTCTTCATCTTGTATG 970992 29 100.0 37 ............................. GATATTTCTTTTATAGATTTAGAAAAAACTTTAGCTG 971058 29 100.0 37 ............................. TTGTCTATTAGATGTATGTATTAAGTGATACATATCG 971124 29 100.0 35 ............................. AAGTTAAAGTGACACAAAAAACCTGTGATGAGGGG 971188 29 100.0 37 ............................. TCCTTAGAAAGTTCACACACATAACTTGTATACCATA 971254 29 100.0 36 ............................. GAAAGAACTAGAGCTAGTATTTTATATGAATTATCA 971319 29 100.0 35 ............................. AGAATACAGTCATCTTAGAAGAAGAAGCTAATAAA 971383 29 100.0 37 ............................. ATAAATAAGTACTTGGGTTTATCTTCTTTTTTTGTAA 971449 29 100.0 36 ............................. TGATGTGGAAGAACTTTAATCCTTTGGACGAATTCA 971514 29 96.6 36 ............................T GAAGAAACTATAAAAACATTAAGCATTATAAAAGCG 971579 29 82.8 0 ..............G....AG......GT | ========== ====== ====== ====== ============================= ===================================== ================== 14 29 98.5 36 TTGAACAATAACATAAGATGTATTTAAAC # Left flank : ATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATATTAGCTCTTGAAATATAAAGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATGG # Right flank : TAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATGGTTGAACAGTAACATGAGATGTATTTAAATTGTTTCGGAGATTGGCTTCTATAAAACTTATCTACGTTGAACAGTAACATGAGATGTATTTAAATGGGATTTCCTCATTAAAACATCTTCATTTGGAAGGTGTTGAACAGTAACATGAGATGTATTTAAATTTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATTGTTGAACAATAACATGAGATGTATTTAAATGTGGTAGTAAGTACATTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 971861-972152 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 971861 30 100.0 35 .............................. TGTTTCGGAGATTGGCTTCTATAAAACTTATCTAC 971926 30 100.0 36 .............................. GGGATTTCCTCATTAAAACATCTTCATTTGGAAGGT 971992 30 100.0 37 .............................. TTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATT 972059 30 96.7 35 ........A..................... GTGGTAGTAAGTACATTACTCTTTGAGAAAAAATC 972124 29 90.0 0 ........T......A.......-...... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : CTTAGAAGAAGAAGCTAATAAATTGAACAATAACATAAGATGTATTTAAACATAAATAAGTACTTGGGTTTATCTTCTTTTTTTGTAATTGAACAATAACATAAGATGTATTTAAACTGATGTGGAAGAACTTTAATCCTTTGGACGAATTCATTGAACAATAACATAAGATGTATTTAAATGAAGAAACTATAAAAACATTAAGCATTATAAAAGCGTTGAACAATAACATGAGATAGATTTAAGTAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATG # Right flank : TTGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAACTTAAAGTAGTATTTTTAATTAGTTTTATTATGTTTATTCTTGGTATATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTGTAGGGTATTCTAGAACAAATGCTATTAAAGATAAAGAGGCTAGTTCATAAAAGAATTAATTTTTTATTATCTCATGGATTAAGTATGTGTTAAAGTTTTCAATATTAACATAAGAATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAAAATAATTAGTTATATTAACTAAAAGGTGTATGGTATAAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 7 982904-983726 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 982904 30 100.0 34 .............................. GACATATTAGTTAAAGTACGACTGCCAGTTGCAA 982968 30 100.0 35 .............................. GATGCTACGCAGGTAGTAAGTAAAGATGGCTTTGG 983033 30 100.0 36 .............................. TATGTATTGCATACTAAGTCAATAATTTGATTTTCT 983099 30 100.0 36 .............................. TTAGATTATCTCTTATCAAATCCTCCACTTTAGCGA 983165 30 100.0 37 .............................. GATGCTTGGAAAATTAAGAACATAGGTTTATCATCCC 983232 30 100.0 36 .............................. TCATATAAATATTCTCTTTTTAAATCTGTACTAAGT 983298 30 100.0 34 .............................. CTCTTTCACCTATTGGTGTTTGACCATTTTTCTT 983362 30 100.0 37 .............................. AAAGTATTTTTAACTGTATTACCTAAAATGTTATTTA 983429 30 100.0 36 .............................. CAATATTTGCATTTACATTTTTTACATTCTTCTTTA 983495 30 100.0 36 .............................. TCCTCAAATAAGAAAGTGGTACCAAGGCTTTAATAT 983561 30 100.0 34 .............................. TATTTTTCTTTAAAAGATTTATGCATTATTCTAT 983625 30 96.7 38 A............................. TCTATAGAAGAACCAGCAGATTTGGCAATAGGTGTTAA 983693 30 90.0 0 ......T........G......G....... | G,AG,T [983712,983718,983722] ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : TATTTTGAATTTATTATTGTTGACTAAAGGAATAGTAAATTATTTCAACAGAGCAACAGGATAATCTTTTTAACAAATACCTATACAAAGTATTGTTCTATGGAAATGCATATGAAAACTATTATTGCATAATTTGGTGGGGAAGAAAATAATTATAAATTGATAGAAGAAAGAGAAGCAATGTATCAATTAGAAACCTTAAAGAGGGATAAATATTACATGAAGTTAACAGATGATATTTAAAAAAGTTCTTGTTTAGGTATATAAGCAATTTTCACTTTAAGCATAATAAGCTCTACTTGTTTTTTAAATATTAATTTGAATTTTTCCAAGTGAATTTAATTTTAAAATCTATTCTAGCTATTGACATTGAAGGCTTATAGTAGGTTTTTATTATGAATTTTTAAAAAACAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAATGCCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTCCTATG # Right flank : TATTGTAGACACAGAAAGCTGATCACATTACAGTATAAATAAAAGAAGGATGTGTTAGAAATGGTAAGAGGTCAAAAACAATATACGGAGGAATTAGAAAATAAATAATACAAAAATTAAATGTTTAATAGTTTTTATTCTATGGAAAGAGATGGATTCTATAAAAAGATAGATTGTATGTTTTTAGGATTAGAGAATTAAGTGAAGAATTTATATAAATTAAATGATCAAATTTCTTTTCATACAAGAAAAGCTTTAACCTATTTGAAATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 8 984495-984983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 984495 30 100.0 36 .............................. GCCAATTGTGAAGCTGTATCCTCTTTGAATTTATTA 984561 30 100.0 36 .............................. CAAGCTAATTTTTGCAAACATTCTTTACAAATTGGA 984627 30 100.0 34 .............................. AGTCGTGCCAGTTCCTTAGAAACTTTGTTTTGAC 984691 30 100.0 36 .............................. GTAAAACCAACCCCAACACCTTGGGCCATGTATTTA 984757 30 100.0 36 .............................. CGATTTTTTGTTTTTATGCCAAAAATTCAGTGGAAT 984823 30 100.0 36 .............................. TTAAGATTTACTTTGTTTCTTCTATTAACGAAAACT 984889 30 100.0 35 .............................. TAAAATTTTTCTTCTTGATTAATCTTTTCTCCATC 984954 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 99.6 36 ATTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATTTATAAGTTATGAGGGGGTTTAATATGACATTACCTAAAATAACCCAAGAGAATGTGAACATATTTATTCCACTTAAGGCATCAAAAATATCATATAGATTTGCTAAGGAACATCATATATCTCAAAAGCAAGCTTTATTGGAGTCCTATAATTCAAAAACCGATGAAGCTTTGGAAAGAGAATAAACTAAATTATGGTATGAAGGTATCAATTATTTATATGAAGAATTAGAAGAAGAGAAAGATTTAAAAAAGTAACGAAATTTTTTACACCTAAATCTATCATATTTAATATACTACACCTAATTATGCGTAAAATATTTTTCCAACCAATTTCAATTTTAAAACCTATCTTAGGCATTGAAATATAAGGCTTAAGATAGATTTTTGTTATGTATTTATGAAAAGTGGGAAACGGCTGGAAAATTTTCTGCAAAACCTTGTAAAATCAATAGGTATATGATATTCTTTAAAATAAGGAATGGCTATTTTGCTATG # Right flank : CTTAAATGAGTATGAAAAATTAAGTATAATTTAACCACAACATATGATGTAAAATCATTATAAAGATTATAATCTTTATAATGATTTTTTAATATTAAAAAAAATAATATATAATATTATAATCATATGGAGAATGTTGATTAAATATAAATAATGTGGTAATATAGAATAAAAATTTAGAATATTGTTAATATTCAATAAAAATACAATTGAAGACTGGAGGTGAAATAATGGAAGTATATGAATTAACACTAAAAATATTTCTCCTCAAAGATTTAACAGTGGACAAGTCTTATGAAAAATTAACAGAATTAATTGACAAATCTTTATGTAAAGATGATGAATTATTAGCTTTACATAATGAAAATAAGTATAAATACTATACTTTTTCATTACCTTATAAATTGGAAAAAGACAAAGTATATAAAGCTGGAAATATATATTCAGTAAAAATAAGAACTATTGATGAGAAAATATTAAAGAATTTCAAAACTCAGCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 994521-994945 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 994521 30 100.0 36 .............................. ATCTTCTTATAATTGAAATATTCTTATCTGCCATTT 994587 30 100.0 37 .............................. TAAATTACAACCCCGTCAGTTTCATTTAAAGGGTTAC 994654 30 100.0 36 .............................. AATTAAGAAAAAATAATATAGTTGCCAGGGAGTTAT 994720 30 100.0 35 .............................. ACGTGATGCAGATGCATATGAGATAGCATTAGCAG 994785 30 100.0 36 .............................. TCTTTAATTAAGTCAAACCCATTATTTAAATCATAA 994851 30 100.0 35 .............................. TATAGTTCATAAATATTATTTGTATCATATGTATC 994916 30 83.3 0 A.....C.T...................GC | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTGAATAGTAACATGAGATGTATTTAAAT # Left flank : TAAAGGAGAAGATGTAGATGGGAAAAGGATTTAATTATAATTATGCTTTTGTTTTTTATGATGTTAATGAAAAAAGAGTAAACAGAGTATTTAAAGTTTGCAAAAAATATTTATCTCATTTCCAAAAATCTGTATTTAGAGGAGAAATAACACCAGCAAACTTAATATTATTAAAAAGGGACTTAAATAAAGAAATAGATGAATGTGAAGATTTTATATGTATTATAAAGCTAATGAATAATAATGTATACGGAGAAGAAATATTAGGGAATAAAGCAATGACAACAGGAGAAGATTTAATATTATAAAAAAATGGAATCAATTTTTCCAACCAATTTTAATTTTAAAACCTATCTTAGGCATTAAAATATAAGGCTTAAGATAGGTTTTTATTATGACTTTATGAAAAGTGGGAATTGCCTGGAAAATTTTCTGTAAAAGCTTGTAAAATCAATACTTCTATGGTATTCTTGGTTTTAAGGAATGGCTATTTCCCTATG # Right flank : CAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATTTTTTTATAAGTTGTGGTGGTACATTAAAAGCTATAGTTGAACAGTAACATAAGATGTATTTAAATATGATTATCACTAAGGAGAGTGAAAAATGAAAGTTGGTTGAACAGTAACATAAGATGTATTTAAATTTGTCAGTAATATATACAGTCTTGTCCCATGCAGGGTTGAACAGTAACATAAGATGTATTTAAATGTAATAATATATTTTTTTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 10 995199-995621 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACBCX010000001.1 Clostridium botulinum strain Cam11A-KM36-1 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 995199 30 100.0 36 .............................. TTTTTTATAAGTTGTGGTGGTACATTAAAAGCTATA 995265 30 100.0 36 .............................. ATGATTATCACTAAGGAGAGTGAAAAATGAAAGTTG 995331 30 100.0 35 .............................. TTGTCAGTAATATATACAGTCTTGTCCCATGCAGG 995396 30 100.0 35 .............................. GTAATAATATATTTTTTTAATTTTAAAACTTCCTC 995461 30 100.0 35 .............................. GACAAAAGGGATAGATTAGAAGATTTATTAGATGA 995526 30 100.0 36 .............................. GATAAGGTTGTACAATATTTTAATAAAAGAGGGATT 995592 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 99.0 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : ATATAGTTGCCAGGGAGTTATGTTGAATAGTAACATGAGATGTATTTAAATACGTGATGCAGATGCATATGAGATAGCATTAGCAGGTTGAATAGTAACATGAGATGTATTTAAATTCTTTAATTAAGTCAAACCCATTATTTAAATCATAAGTTGAATAGTAACATGAGATGTATTTAAATTATAGTTCATAAATATTATTTGTATCATATGTATCATTGAACATTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCCTTAGAGGCAACGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGCGTAACAAATTTACAAACTTATTCTAGCCATTGATATATAAGGCTTAGGATAGGTTTTTGTTTTATATTTATAAAAAAGTAAAATCACTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAAAGGCTATATGCTATTCTTAAAATTAAGGAATGGCTATTTTACTATG # Right flank : CAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTCATCTGTTATATCTATACCTAGAATTTTTATAAAAGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAAGGATTTTTATAAAACTAAACTATGCATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //