Array 1 377524-376187 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JQNX01000001.1 Methylacidiphilum kamchatkense Kam1 contig00001, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                          	Insertion/Deletion
==========	======	======	======	=====================================	=========================================	==================
    377523	    37	 100.0	    38	.....................................	ATTTTTCACAGAAATATTTACCGAAGCAATTTTCCTTA   	
    377448	    37	 100.0	    38	.....................................	CACTAATTTGGAAGTGACAAATAGATAATCTTGCCCAA   	
    377373	    37	 100.0	    41	.....................................	ATAGTGATAGCGCTTAAGTGATTAGCAATAGCCTGCATGGT	
    377295	    37	 100.0	    40	.....................................	AATATCTTCAACAAGACCAGCTTGATCAGGTGTTTCTATC 	
    377218	    37	 100.0	    40	.....................................	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG 	
    377141	    37	 100.0	    41	.....................................	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA	
    377063	    37	 100.0	    38	.....................................	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT   	
    376988	    37	 100.0	    40	.....................................	AGTTATCTTCATAAAACCTCCAAGGTTTAGGGTTTTTCTT 	
    376911	    37	 100.0	    37	.....................................	CTTGAATCGGGATATAGACCCAATTAATCGGGGGCAA    	
    376837	    37	 100.0	    40	.....................................	GATATTCCAGTAACCTTGCTAAATCATGCTCTTTCTCTGG 	
    376760	    37	 100.0	    41	.....................................	CCCTGTCCCAAATTTTTCGATTGTTCTTATAATTTCTCCAA	
    376682	    37	 100.0	    38	.....................................	CATCTAATCGTTCAGCTTCATTACTTTTCCCAAACCCT   	
    376607	    37	  97.3	    38	....................................A	AACAGAAACTTTTTCCTCCATTAAATTACACAACACGA   	
    376532	    37	 100.0	    41	.....................................	CTTCTGATGACTTCCTCTGGATTTTTTCCAGTAACATTCCA	
    376454	    37	 100.0	    39	.....................................	GAAGGGAAAGGAATTCGCTTAGATAACACAGTGGAAATT  	
    376378	    37	 100.0	    40	.....................................	ATCCATCTACAATTAATTGCATTGTTTACGCTTATTTTCA 	
    376301	    37	 100.0	    41	.....................................	CTTCCATCAATAGCAAGACTAACGATTGCATCCTTTAGTGG	
    376223	    37	 100.0	     0	.....................................	|                                        	
==========	======	======	======	=====================================	=========================================	==================
        18	    37	  99.8	    40	GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC	                                         	       

# Left flank :   ATAGCAAAAATTTGTGAAGACTATGGAGTAAGAGTGCAGTTTAGCGTATTTGAATGTTATTTAGAAGAATCAGAGCTAGAAGAACTATGGGAAAAACTTCTTTTGGAAATCGATCCTAAAGAAGACAGAATTGTATCCTACAAAATTGATGCTAAAATGGCAAAAGAAATAAAAACAGCTGGGACCATGGTATGCTCTGAAAAAGTGATCTGCTTTTTAGTATAAAATATATTGCAAATTATAAAATTTCTTAATATAGTTAAGAGCATTTGCAAAAATAATGACGGTAGTTTTTTTGAAAAAATTTCCAATTTAGGTATTGGCTCATGTCCCTGTAAAATAGCGTTGCCAATACCTAATAATAACTATTTATGTTGAATAATTTATTATTTTTGACCATTTTTTATTAAATTTGAAGCATAAAGTGTGCCAAAATAAATCATGCATCAATATCGGAATGGGCTATATTATGTTCATAATCAATATATTAGAATATCGCA
# Right flank :  TGGGTCGTTTGGTACTTGCTGCAGAGACTTGGACAACCGAATAAAGACATTACTGGATGGGTGCTCCCCGAGAAATGTTGCCTCATTGAAGGCTTACCCTAAAATGAAGCTATTTGATTCAAGTACATGTGTATCCCGGTATCCTTCCATACCCTAGGATGACAGAATGAGCAGCGCATGGAGCGTTTGCTCGAATTTCCCGAAGTGACTTACACTAAGTAGTCCCGGCACTTAGCCAAGAAAAAGCTTGTTAATAGACTATCTTATTTCTAGGGAGGAATTCCCCTACCCTCTCCGGGGGTTCTTTCATAATGCAGTGTGCCATAATCTGAAAGGCTACTTCCATCTCCTAGGGACTCGGCTACGGAAAGAATATTCGGCACCCCTAGAGCCCTTTGATCCAACAATAAAAAAGGCACTTGAGCTTTGTTATAAAACTCAAGCATTCTTGTACTAGAGTTTTCCTCAGCCCAAGGATCTTCAAATGCCATAACTAGCAA

# Questionable array : NO	 Score: 3.25
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCAGATTTAGAGATGAAGCCGAAAGGCAATTGAGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:56.76%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-3.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,1.05   Confidence: HIGH] 

# Array family : NA
//