Array 1 2124-3190 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZQ01000205.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2776 NODE_205_length_3202_cov_1.24205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2124 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 2185 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 2246 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 2307 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 2368 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 2429 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 2490 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 2551 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 2612 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 2673 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 2734 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 2795 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 2856 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 2917 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 2978 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3039 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3100 29 93.1 32 ......................C.C.... CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT A [3122] 3162 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CGGAGGATGGAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12027-12788 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZQ01000119.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2776 NODE_119_length_12828_cov_1.31136, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12027 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 12088 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 12149 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 12210 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 12271 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 12332 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 12394 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 12455 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 12516 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 12577 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 12638 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 12699 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 12760 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TCATTTCTGGACGGGGCTGTGTGACGAATACGGTGAGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-989 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZQ01000099.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2776 NODE_99_length_15676_cov_1.32998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 124 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 185 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 246 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 308 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 411 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 472 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 533 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 594 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 655 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 716 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 777 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 838 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 899 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 960 29 96.6 0 A............................ | A [986] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39-860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXZQ01000177.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain BCW_2776 NODE_177_length_4987_cov_1.16184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 100 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 161 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 222 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 283 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 345 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 406 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 467 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 528 29 89.7 32 A............T...A........... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 589 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 650 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 711 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 772 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 833 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 96.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //