Array 1 43794-45469 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFZF010000007.1 Escherichia coli strain LMFS-V-JF-012 NODE_7_length_165248_cov_76.9319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43794 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 43855 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 43916 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 43977 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 44038 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 44099 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 44160 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 44221 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 44282 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 44343 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 44404 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 44465 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 44526 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 44587 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 44648 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 44709 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 44770 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 44831 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 44892 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 44953 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 45014 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 45075 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 45136 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 45197 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 45258 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 45319 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 45380 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 45441 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60986-61686 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFZF010000007.1 Escherichia coli strain LMFS-V-JF-012 NODE_7_length_165248_cov_76.9319, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60986 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 61047 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 61108 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 61169 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 61230 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 61291 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 61352 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 61414 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61475 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61536 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 61597 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 61658 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //