Array 1 6321-5362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHY010000003.1 Listeria innocua strain FSL W9-1196 NODE_3_length_478993_cov_107.156547, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6320 36 100.0 30 .................................... TTTAATTCCGCTAGGAGCAACCCAGGATAA 6254 36 100.0 30 .................................... TTTTATCTCGTACATCTGAAATAACCACAA 6188 36 100.0 30 .................................... CTTGAAAATGTTGTAGATTTGAATGGTTCT 6122 36 100.0 30 .................................... TTTAATTCCGCTAGGAGCAACCCAGGATAA 6056 36 100.0 30 .................................... ATTAGTTTTTACCGTTGTATTTGTATCATC 5990 36 100.0 30 .................................... ACATCTGACATTTTTGCCTGTAGAGGACTA 5924 36 100.0 30 .................................... GATGCACAAGTCCATCATGTGATTCCCATT 5858 36 100.0 30 .................................... GGCGATGGATGAATTCGACGAGGAAAACTT 5792 36 100.0 30 .................................... GAGCGAAGTTTTAGTATCAGCTAGTTACGA 5726 36 100.0 30 .................................... TTTGTGAAAGGCGTGTTATAATTTATTAGA 5660 36 100.0 30 .................................... CGACACACAAAAGTGCAAAGTGCAGATTGA 5594 36 100.0 30 .................................... TGCCACTGTTCTTAATGCGTAACTCGTGCT 5528 36 100.0 30 .................................... GACCGTAGAATTCCGAATGGTGCGAGAGCG 5462 36 97.2 30 ..........................G......... AGAGAGGATGAACTCTAAATAATCGGAAAT 5396 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGCTGACTGCGACGATTAGCGAGTTGATTGGTTATGAGCTTCTGGAGCATGAACTGGATTTAGAGGAAGATGAAATTACAGTCATTGAATTATTCAAAGCTTTGGGTATCAAGATAGAGACAAAAAGTGATACCGTTTTTGAAAAATTAATTAAAATAGTACAAGTCTATAAATACTTATCAAAGAAAAAATTGTTGGTTTTTATTAATGTATGTGCCTATTTAACAGAAGATGAGTTACTAGAGCTAAGGCGCTATGTCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAACAGAAGGATTTTCGCAGGTTATTCTAGATTCAGATTATTTTTTACAAGTTGAAAAAGGAATGTAGAGTTCAAATGATCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAG # Right flank : ACATCTCTCAATCTACTCCAGCTAGAAAAAGTTACACCATTATGAAAGAGAGGCCCCAACACATGACACAATACCACTACCTCGCCTCAAAAGTAGCATTAAAAAATAAGACAGATTTTATATATCAAAACGACTTAGACTTCCTGAGCTTGAATTTTGAAGAAAATATTGATGAGCGTACAAATGAAAAATTTTCCTACTCCAAACATTTTAACCCAACTTGCAATTTCCAAGTCGCTATAAGTGAAGGGGAATTACCGTTAAAAGGCGAAGAGCAAAATAATGATTATGAATCTAAAAGTTTAAAAATACTACACGATTACATTAAAAAAGCTAGTAAAGAAAGTGATACCCTTGAACTATACACTTCATGGAACGGCGAAGAAAATTTCCCTCTGACGAATAAAACAGAATTAGCTATAGAAAATTTAACGCCAGAAAATTTGATTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 1155926-1155390 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHY010000001.1 Listeria innocua strain FSL W9-1196 NODE_1_length_1424684_cov_78.643023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1155925 29 96.6 35 .G........................... GTACTCCATATGTTCAAGAGTTGCCGACCAACTAG 1155861 29 96.6 36 .G........................... GGCGTAGATTTATCCCATCGTCTAATTGTTCCATTC 1155796 29 100.0 35 ............................. AAGCTATATAAAATCAAATCTAAGGAGCTATCGCC 1155732 29 93.1 34 ..............A.T............ CTCCAATCTTGATGTTTTTTAATCGTATTTTTCG 1155669 29 93.1 34 ..........T...A.............. GGAGATTTTAAAATCTGATCATAATAACTCACTT 1155606 29 100.0 36 ............................. TAGGTTGATTTAAGACCAATGTTTGATGTTGCTTCA 1155541 29 100.0 37 ............................. ACCAAGTGGTCTTGATACACATTTGTGCCTGTTGTTT 1155475 29 100.0 29 ............................. TATAGACCTTTTCGACATTCGTTGGTTTA 1155417 28 75.9 0 ..........T.C.C.A......A-...G | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 95.0 35 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGCTTGCAAAACTCAAGAATCAAAGAAGTCATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACAACGATTTCCATCGGACGAATCTTAGGTCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTCAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAAACTGTCGACCAGCAGTAGCGTAAAAATTCCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTTATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTAAGGTAAGATGGGAGTAAGAAGAAAAGCGCACG # Right flank : CTCAATTTATAATCTTTGCTCACATTTAAAAATTACAGTTTTAATTTACATCCCTTAAAAAAATGCCTTTAACAACCATTGACATTTACCAGCTCTCTCAAAAAATCAAACATAATCTGGAGGACATCAACATGAAAAAAGTTCTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGGTGTTCATCACAAAACGAAGAAGTAACGAAAGAAACTGCCATTTCGAAGACGATTTCTATACGGGCGGACTACACTATTCCAGCAAATTTGGATGAACTAGCAGCCAACAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACGATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAAGGCGAAAAATTAAATATTTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCACTTGAAAAAAATGAAGAATATACC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : GGTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //