Array 1 247391-247088 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJLK01000001.1 Streptococcus pyogenes strain SPY3005 IOCELNBI_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247390 36 100.0 30 .................................... TATCACTAACTCCCTATTGCGTGGGGAACT 247324 36 100.0 30 .................................... TGTTTCTTGCAATCGCAATATTTGGGATGA 247258 36 100.0 30 .................................... TTAGAGGCCTATTTCACAGACAAAGACATC 247192 36 100.0 30 .................................... GACTCATCCCAACTACCGTAAGCCCTAAAG 247126 36 94.4 0 ..................C.............T... | CT,T [247090,247096] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACACAAAGTGATACTATTTTTGAAAAATGTCTAGAAATACTTCAAATTTTCAAATATCTCACCAAGAAAAAGTTAGTCGTCTTTGTCAATAGCGGAGCTTTTCTAACAAAAGAGGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATATTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGATTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : ATTGCCGATGATAACTTGAGAAAGAGGGTTAATACCAGCACTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAACAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGGGTTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGACTTACGTTTAAGTGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTAGGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTCGTGATGATGGAGGTGTTTTTAACATGGCGTATGGGCCTCATTCAAGAGACTCTGCTAGGC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 13012-13906 **** Predicted by CRISPRDetect 2.4 *** >NZ_SJLK01000004.1 Streptococcus pyogenes strain SPY3005 IOCELNBI_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 13012 32 100.0 34 ................................ AAGCTAAACCTATCCTAAAAATCAAAGGCACAGG 13078 32 100.0 33 ................................ AATGACTATTATGGGGATATCTGCCACGATATA 13143 32 100.0 34 ................................ ACCAATAATTCTAAAGTCGCTATCTCTATCTACG 13209 32 100.0 33 ................................ TTATAATACAACCAATAGACATAATCTAGAATC 13274 32 100.0 37 ................................ AAACTATGTGACTGACACTCTGGACTATGTCAAATAC 13343 32 100.0 34 ................................ TGCTGTAGGTAAAGCCGATAATAACTGGGGCGGA 13409 32 100.0 33 ................................ AAAAAAATAGCTAAGATCGCTACTGTGTCTGCT 13474 32 100.0 35 ................................ ATGTAATCCTGTTGTTAACTTGTCAAAGTCATAGA 13541 32 100.0 35 ................................ AAAAACAAATCGTTATCAATTTGCGTCTTTCCAGC 13608 32 100.0 34 ................................ GATTCCCCCACGAAGCAAACAAGAATTCACAGTC 13674 32 100.0 37 ................................ ACGTAAAATATTAATCAGTGTTGATTTACCAGTAACC 13743 32 93.8 34 .......TT....................... AAATTTGGCGAGGAGAGCGTGAGGCGAATCTAGT 13809 32 100.0 34 ................................ ATTAGCACTGGTTATATTAAGTGCCGAGGAAAAA 13875 32 96.9 0 ...............................G | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 99.3 34 GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGAACTATGGACAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAACACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCA # Right flank : GATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGAGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCTTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //