Array 1 366769-365945 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030144.1 Leptospira mayottensis strain MDI222 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 366768 29 100.0 32 ............................. GAGAAATCAGTCATGAAAAAAAATACCATCAT 366707 29 100.0 33 ............................. TAGAGTGTGCAATACCCTATTAATAAATGGTAA 366645 29 100.0 32 ............................. AACAGATCGAGATTCTTCGGGCCGAGGGATTT 366584 29 100.0 32 ............................. GAAGCGGAAATTGTTGCACTAGGTGGTTTCCA 366523 29 100.0 33 ............................. GCTGTGTTCCCTCGTTTCGCCCGCACAAATTCC 366461 29 100.0 32 ............................. GGACAAAAGAATTAAATCATCTCAACTCGGAC 366400 29 100.0 33 ............................. GCTGTGTTCCCTCGTTTCGCCCGCACAAATTCC 366338 29 100.0 32 ............................. GGACAAAAGAATTAAATCATCTCAACTCGGAC 366277 29 100.0 32 ............................. GAGCCGGACTCATCATGTCGCTGGCGACCTGC 366216 29 100.0 32 ............................. CTGGAACGTTGGATGACATTTGGATGTATGCA 366155 29 100.0 32 ............................. GAAAGGCGATCACAATAAAATCAGAAAACCCA 366094 29 93.1 32 ............TG............... AATCTCGGAAAGAGAATCTCTTGGTACTCTAA 366033 29 100.0 32 ............................. ATCCGCACCGTCTCCGTTAAAACCTCCCTTAA 365972 28 82.8 0 ....................-...C.TTA | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATACTTTTTCAGGATTGTATGAAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTAATCTAATTCCGATATATATAATATTATGATAAATAATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTCGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAACCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTTTTACAACTCAAACATCTATGTAAAAGCAGGAGATGACGGTTCCAAAGCGAGAAACCTTCCTTATCGTTTACCTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 632950-633283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030144.1 Leptospira mayottensis strain MDI222 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 632950 29 100.0 32 ............................. TTCATGAGCATTGATACTTCTCCAATCTAAAA 633011 29 100.0 32 ............................. ATTCAATTGGGAAATTCAACGGAAAGACTTTT 633072 29 100.0 32 ............................. GGAAAAGGACTTGAAGACGAACGCTCCGGTCT 633133 29 100.0 32 ............................. AACTGAGATATTTCGTTCGATCTAAAATGGAC 633194 29 100.0 32 ............................. CAACTTGAGACAGGTAGGGAAATTCCCCGCCT 633255 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATACTTTTTCAGGATTGTATGGAAACAACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTCATAACATTCAATTAATCTAATTCCGATATATATAATATTCTGATAAATGATTTCTCACTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTAATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTTTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTTCAAAACCAAACACCTTCGGGAGAATATCCTTTTAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1927228-1926771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030144.1 Leptospira mayottensis strain MDI222 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1927227 29 100.0 32 ............................. ACGAAGGCTTCGGAAAAAAAGAAGCCGGATTC 1927166 29 100.0 32 ............................. GAAGCGATCCAGTCGGGACGAGAGTTCCCGGG 1927105 29 100.0 31 ............................. GAAAGTAAACGATGGAAACAACTGCAATTTA 1927045 29 100.0 32 ............................. CATAACACCAGCAACAGATAGAGTAAACATAT 1926984 29 100.0 32 ............................. TTGCTTCTGCAGTCCATTGACGAATTGCTAAA 1926923 29 100.0 33 ............................. CGCGAAACCGACCTCCGCCAGTAGAAGGTTTAA 1926861 29 100.0 32 ............................. TTTATATAGACGGAGTTATTGCAGCGTACATA 1926800 29 89.7 0 .........................G.TT | T [1926775] ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.7 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAATCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATCCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAACGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAAGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACGAGTAACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2291052-2290225 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030144.1 Leptospira mayottensis strain MDI222 chromosome I Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 2291051 29 100.0 32 ............................. ACTACTGAGCGCGCATCAGAACAATCCAATGA 2290990 29 89.7 23 ........................TGT.. CTCCTACGGGGTCGCGACCCGAC CA [2290966] Deletion [2290939] 2290936 29 96.6 44 ............................T TTTTATGGCAAGAGGTCAATACTCATGTGACTGTTCTCTTCCAG 2290863 29 100.0 32 ............................. GTTGAGCTTGCAATTTTTGAGGCGGAAATTGC 2290802 29 100.0 32 ............................. GTTGAGCTTGCAATTTTTGAGGCGGAAATTGC 2290741 29 100.0 32 ............................. GATCGGAAATGGTGTATATATCGGATACTATG 2290680 29 100.0 32 ............................. CTCTAAACGAGTAGGGGGGATTCCTGTAGCGA 2290619 29 100.0 32 ............................. ATGCAATTATACAGGGGCAAAAAACCCGTGAT 2290558 29 100.0 32 ............................. CTACAATAGAGCAATGCAGAGAGGACCTTCTT 2290497 29 100.0 32 ............................. GGCTGCGGGCCATCAATTTGGTTTGGTGACGA 2290436 29 100.0 32 ............................. AAAAACGTATTATTCTTACTGCGATTCCAGGA 2290375 29 100.0 32 ............................. GAGAGAGAAATCCGCAGGCTCTCGAAAATCTA 2290314 29 100.0 32 ............................. ACGGAGAAGTTCGATTCCCGGACGGAAGAGCG 2290253 29 89.7 0 ..........................ATT | ========== ====== ====== ====== ============================= ============================================ ================== 14 29 98.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCCGGATAATTGTGAATCTTGTTACGTTCGAAGTACTAATGCGATTCTTATACCGGTTCCAAATATTTCAATGAAAATTGATTTAGAGATATGAAAGACTCAACAGTTTATCGTAGAATGGAGAATCTTTTATATTTCAAAACGACAGTTCCTTGGAGAACTAACTCGGTGAGATATTTTAGACAATCCGTTTAGAGGTTTTTCGCAATTTCAGTCGGTATTTTAAATGGGGCCATCTTACTTTTACTCTTTTCAATTTTGTTTTTGGCTACTTCCTTTTTTTCAGCAGAAAAAAGTCAGCGCGTTTTAGTTGTTAATGACAATCTTCAAACACGGATTCTGCACCGCATATCAGTGGGACTTGATTACGGGTAAAGTTGTAAAAAGCTTCCTTAGAAGCTCGTGTTCTTAGTAAGACGATTTGCCATCATAAATTAACTTGGACACGAAACCCAAAAATAGATTGCAAAATCCAGATTTATCCTATACAAGTTTTTAGC # Right flank : TTCAGTCAAAACAGATCAGTAATAAAAATTCGGGAATAGAATCCAATTTAGAACTTTCAGTGTAAAAAACTAAGAACCAGTCTCAAAACCTAAAAATGTAGGAACTCTTACCAATTTTAAACAAGCCGCACAAAAACGGTATAAACCGCCAATGCGACGTAATCTGTGGGAACTCCCACATTTTCTTAGAAACTTACCGGACACGAAAGATACTCTTTGAAGGTGTTGAGACGAACTCTAAAACAAGCATAAGGCGATAAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGATTGAGATACCTTCCAACCGGATTCGGTAATTTTCATAAGAGTATTGTTTTGATCCAAAGATTCGAAAATCATTTCCGTTTTGGTTTTATATCCGCCAACAGTTAGAAGCTCATTTTCACCCTCATAACTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //