Array 1 283742-282920 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNT01000002.1 Roseovarius salinarum strain N53 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 283741 29 100.0 32 ............................. ACTATCGGGACGGGTGATACATTCCGCATCCC 283680 29 100.0 33 ............................. CTGGTCACATAGGGCCTGATCTCCTCGAACGTG 283618 29 100.0 32 ............................. GCGACAGAGGCCCAGCGGCGGCTTTGGCTCAT 283557 29 100.0 32 ............................. GTAGCGGAGGTGGCGAGCTATCGTGGTTCAAC 283496 29 100.0 31 ............................. CCGACGATCGACAAGATGGCGCACACGGGCG 283436 29 100.0 32 ............................. GGGGTTTGTCATACCAGAACGGGAGGGCGTCG 283375 29 100.0 32 ............................. GTGGACGACGCAACCTTCCGCCGGATGTGGCT 283314 29 100.0 32 ............................. GCAGGCGGTAGGCTGAGTGGCTACCGGGCAGA 283253 29 100.0 32 ............................. ATCGAGGTCGAGAACCGCGAGGGGCAGGCCTA 283192 29 100.0 32 ............................. ACACCCAACAGCCATGCGGTTCAACTGTGCCT 283131 29 100.0 32 ............................. GGGGTGACGCATGATCGCTCAAATCCAGGCGC 283070 29 100.0 32 ............................. CCACATTGCCCGCACCCCTTTGCTTGAGGCTC 283009 29 100.0 32 ............................. TCGGGCCGCACGTCCCGGCACGCCATCCAATG 282948 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : GCTCGGATTGATCGATGGCTGGTTCGAGGATTACAACGAGAACCATCCGCACTCAGGGCTGAAATGGCGCTCGCCCCGCGAGTTCATCGCAGCTCAAACCGCAACCGCCTGAGTGTCCGGCGAAACGGGGGCAAGATCAGGGAAAATGTCTACCCCCAGCGCGACT # Right flank : CGCCAACGGGCTGTGTCCCGTGAAGTGGTGTAGGAACTGGCGTCGACCTGCTTCTTCATGGCTGGTGTCGCTCGTTCACTGTGCGGCGATCATTGTCGCCGCGTCGGTATCGTTACACACGGCCGTCAGCTTTTCCACCGGCATGTAGCGGCGCGAGACGGCCCATTCGTCGTTCTGCTCCAGCATGAGCGCGCCGACCAGGCGGATGACGGCCTCGCGGTTGGGAAAGATGCCGACCACGTTGGTGCGGCGCTTGATCTCCTTGTTGACGCGCTCCAGCGGGTTGGTGCTGTACAGCTTCGAGCGCAGGCTCTCGTCGAAGGCCATGTAGGCGAGGACGTCGTGCTCGTTCGGGCTGCGATCGCTCCCCCGGAGCGATCGCTCGACGCCCTCACCGTCCATGAGCTCGGCGACATCCCGGAACCGGTCACGAAGGTTGTCGGCCACCTCGCGCCAGCGGGGATGGCGCTGGTCGCGGTCCTTTTCGGCGAAGACGGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24316-25747 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHNT01000025.1 Roseovarius salinarum strain N53 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24316 29 100.0 32 ............................. CCTGCTGGGCGCTGCTGCACAATGTGCCGGTG 24377 29 100.0 32 ............................. GATGCAGGCCGAAGTAGGTGATATGCCGCTGC 24438 29 100.0 32 ............................. GCGGGGGATGAGCGCCGACGCCGCCCAGCTGA 24499 29 100.0 32 ............................. CGCCGACCTGTGGCCGACAAGCTGACCGTGGT 24560 29 100.0 32 ............................. GAGGCATGGATATGCTGACACTGAAACACGAC 24621 29 100.0 32 ............................. CACGAGGCATGGGGCGAGGCTCGACGGCGCAA 24682 29 100.0 32 ............................. CGTACGTGCTTCTGGACGCGCGGCCTGCCGCC 24743 29 100.0 32 ............................. CAGCGGCCCGTGACGGTGCCCGGCTCGGGATG 24804 29 100.0 32 ............................. AATGATGTCGATCATGATATCGCCTCCCGTAG 24865 29 100.0 32 ............................. CCGAGCCTCCGACCGACCCCTACGGTTACGCC 24926 29 100.0 32 ............................. GTCACCGCGTCGATCGAGCTGCAGTTCTCGGG 24987 29 100.0 32 ............................. GGGTTCTGAATGGCCACGCGGGAAGATGCGCT 25048 29 100.0 32 ............................. CGGGCGAACACGTAGCCGGGCGCGACGCGGCG 25109 29 100.0 32 ............................. CCTTCGCGCTCTGCTCGCGCTGCGGTCGCGTC 25170 29 100.0 32 ............................. TGCCAGATCGCGGAGCGCACGCAGGCTTCTAG 25231 29 100.0 32 ............................. GACGCGGACCGCGCCGAGGCGCTGCTGATCGC 25292 29 100.0 32 ............................. CCGCCGCCACCGCCGCCGGTCGCATGGTCGCC 25353 29 100.0 32 ............................. GCTTCTGGATCAGGATGGGCGTGTCGACGGAA 25414 29 100.0 32 ............................. CGATGGGGCACCCCGTCTCACAAGACGGTCCA 25475 29 100.0 32 ............................. ATGCGCGCAATGACGATCAGCGGCCTGTGCAT 25536 29 100.0 32 ............................. CAGAGCCGGTCACGCATGCCACCGCGATCAAG 25597 29 100.0 32 ............................. GCGCAGCCCCTGGCTCATGTATTCCGCTATCA 25658 29 100.0 32 ............................. GTCATCCTCGGTGATGCCAGATTCCTCCATCA 25719 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 100.0 32 CTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCGTGACGCGTTCCGAAAAAGCGGCCTTCTCAACCGGATCATCCCGCAGATCGAGGAGGTGCTGTCGGCCGGCGAGATGCCCAGGCCCGAGCCTCCGCCCGAGGCCGCGGGGCCGGCCTTTGACGAGGGGACGAGTGGCGATGATGGTCATCGTGGTTGAAAACGCTCCCCCGCGCCTGCGCGGGCGGCTGGCGGTGTGGCTTCTGGAAATCCGGGCCGGCGTCTACGTCGGGCGGTATTCGCGCAAGGTGAGGGAACGGATCTGGGAACAGGTCGAAAGCGGTATCGGGCCGGGCGACGCCGTCATGGCTTGGGCGGCACCGACCGACCAGGGGTTCGACTTCGCCACCGTCGGCAAGAACCGAAGGATGCCACGGGATTTCGACGGGCTCAAACTTGTCAGCTTCGCACCGAAAGACCCCTCGGCTTGACGCGCCCGGAGGATCGGTGATTTCTTCGGGTATGTATTTTTTGCTTTGATGCAGGTATTTATGGCCAGA # Right flank : CTCACATCCTGCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //