Array 1 23248-22180 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUUN01000025.1 Xenorhabdus nematophila strain SII-2019 AliXJ-1_scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23247 29 100.0 32 ............................. CGTAATGCTTTTTTCAGCTACCGTTTTAACGC 23186 29 100.0 32 ............................. ACAGTGAGATAACGCCCATCTTCATATTTCAG 23125 29 100.0 32 ............................. CATCCATTTCAGTTTGATAAACAAAGAGTTTA 23064 29 100.0 32 ............................. GTTGTTCGCCGTTCTCGTGCCGGATGATGGAC 23003 29 100.0 32 ............................. TAATACTCCAGCTCTTTAGTATTCCCGCGCGA 22942 29 100.0 32 ............................. CCCTCGCGGGAGGGCTGTAAATAGATGTTTAA 22881 29 100.0 33 ............................. AGTCGCTGACACAACAAAATTACACGTCATTGC 22819 29 100.0 33 ............................. AACCACCTATCCAGACGATGACTATCCCTATGC 22757 29 96.6 32 ............................C TGACGGGCACCACGTTCACTTTTTGCAGGAAC 22696 29 100.0 32 ............................. AAAATGTATGGGAATTGGCTTATGTTTTATTA 22635 29 100.0 32 ............................. CCCGATTGTCATTCCTGCAACAGCATCCCTTA 22574 29 100.0 32 ............................. TACAAAACAGCGTCATGGGGTGAAGTAAAAGC 22513 29 100.0 32 ............................. TTCTTTCAGGCATTCCCTCGCCACCTGTCTCC 22452 29 100.0 32 ............................. ATAACCGGATGCCATCCCCCCGCCACCTCTGG 22391 29 93.1 32 ............CC............... AACGCTTCACATTGACGGAAATCAGATATTGC 22330 29 93.1 32 ............CC............... GGCTGTAGGTAAAATCACCGACCACCATGATC 22269 29 93.1 32 ............CC............... GATATTATCGACGCAGCGAATGATTTAACCGA 22208 29 93.1 0 ...........G.A............... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 98.3 32 GAGGTCTCCGTAGGTACGGAGATAAACCG # Left flank : CCTGATTGAAGAAATCCTTGCCGCCGGCGAAATCTCACCGCCACCACCGCCTGCTGATGCCCAACCGCCTGCCATTCCCGAACCTATATCCATCGGTGATATAGGTCACAGGAGCCAGTAAAAATGAGTATGACGGTTGTTGTGACAGAAGCTGTTCCGCCCCGGTTGCGGGGACGTTTGGCCATTTGGTTACTGGAGATACGCGCCGGGGTTTATGTCGGGGATATCTCGCATAAAATCAGGGAGATGATTTGGGAACAAATCACAGAACAGACCGAAGATGGCAATGCAGTTATGGCCTGGAAAACCAACACTGAATCAGGCTTTGATTTCCAGACCTTTGGGGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTTCGTTTAGTGAAGTTTAAACCACTTGCTGAGGAGTAGCTTAGAGAGATTAAAAACTACTTAAAGTCGGTAGAATTTATACCGGCAATAAAGAAGATTAAAAACAATTGGTTATATTTAGG # Right flank : TGGTTTATGACACAACAAGATGAAGAAGATATGATTCCCCCGTAAATACGGGGAAATCCCCCTCAACTTGTCACACAAAAAAGCATAAGCATAAGCATAAGCATAATTACTTATTTGAAAAGATAACCGAAATAACATAAAAATCACCAAAAAGTATTTTGGTAGTCATTTATTTTGATTTAGTCAATATAAAGACAAAAATAAAAATTCATCTGAGCTAAATTTATTTTTTACAATCAGAATATATCGAGATAAAAAGTAACATCAAAATAATGACAGTATAAAATGGTGATATTTATTAACATATAAGGAAAATAAAACGCATTTTTTTGATGATAAAACCAACGAAAACTCTAAATTTTGCCACAAACGCTTCCCAAGCATCATTCGTTAATGATTGTCAAAAATACCTATGCTAACCTACGCCGCTTTTCATCCCCCTTGCTGTTGATTTTATAAGCAATTATCTGTCGGAAATAGGAAGCGAATTAACTTATGAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGGTCTCCGTAGGTACGGAGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGGTCTCCGTAGGTACGGAGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.60,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 33252-35661 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUUN01000025.1 Xenorhabdus nematophila strain SII-2019 AliXJ-1_scaffold25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 33252 29 100.0 33 ............................. AATATAGAAAGATAATCATTGGCATCATTCAGG 33314 29 100.0 32 ............................. CGATTCGAGGCAGCCAAACAGTTGTTTGCCAG 33375 29 100.0 32 ............................. GCAGATAACATAGTACGTACGTCACGGCATAC 33436 29 100.0 32 ............................. GCTTTAATATCAAATATCGTTATGAATTTGAT 33497 29 100.0 32 ............................. GCGGCGGATTTGTTATCACGGCCTGGACACGA 33558 29 96.6 33 ............................A GGTGATTTCAGGACAATTTACCCGCGCGGTGAA 33620 29 100.0 32 ............................. GTGTCACGGATCTCTTGCGTGAGCACTTTAAT 33681 29 100.0 32 ............................. GCGCTATTCAGCACGATGTTGATGAGATGGGG 33742 29 100.0 32 ............................. AAAAATTGCAACCTCATAAATGATACTGGGGT 33803 29 100.0 32 ............................. CTAACGGAACCACAGAACACTTAATTAACGGG 33864 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 33925 29 100.0 32 ............................. CCACTCTCACAATCTCTCTAACCTCACGGAAT 33986 29 100.0 32 ............................. CCACCGAGCAGACAAAATATGGTTATCAGAGT 34047 29 100.0 32 ............................. ACTGTCACTGGGATAATCAATGGACAGATGTC 34108 29 100.0 32 ............................. ACAGAGGAACCAAAATGAATTTACCGCATTTA 34169 29 100.0 32 ............................. GGTAAAACAACGCGCACCGAATAAGGCGAACG 34230 29 100.0 32 ............................. CCACTTCCTCCGGCGGCGTGGGCGATGCAACC 34291 29 100.0 32 ............................. ATTTTTTTAATTGAAGCTGGCTTTAAAATTAG 34352 29 100.0 32 ............................. TCCATTTGTACAGCACTCGCATGGTTCAATAA 34413 29 100.0 32 ............................. CGCCGTATCACATTATTCACTATCTCATTAAT 34474 29 100.0 32 ............................. CCAGCGGGACCCCACGATTTACTCATTGACGA 34535 29 100.0 32 ............................. CGTTGGCTTTTGCTGGGCTGGGATCAGATCAG 34596 29 96.6 32 .................A........... TAATCGGGTTGGGCAATCTCCCGTACCCGATG 34657 29 100.0 32 ............................. CTATAGGAGGAAAACTTACTTTATTGGTAAAA 34718 29 100.0 32 ............................. TGATTGAGGCTCATTGGCGCTCATGGGCGGAT 34779 29 100.0 32 ............................. GCTGGTGGTAATTTTGGCGATGATAATAATCG 34840 29 100.0 32 ............................. CAAACTGAGTAAATCACCGAGCATATATTTTA 34901 29 100.0 32 ............................. GACTGGACAAAAATCTATGGGAATTTGTTAAT 34962 29 100.0 32 ............................. GAAAAATTCATTACAGACGGTGAATTAACGTT 35023 29 100.0 32 ............................. GCATTGTTATCCGGGAAATTCACCGTGTTGCC 35084 29 100.0 32 ............................. TGTACGCAATTGAACAAGATGGGTTGAAACGG 35145 29 96.6 32 ............................A AGAGGAGAAATCTCCTCTTTAGAATTATACGC 35206 29 96.6 32 ............................A ACATGGCACACATAAAGGCATCAATTGACACC 35267 29 100.0 32 ............................. ACTTTTATCAAGATCTTCTAATTGACCAAGTA 35328 29 100.0 32 ............................. CCGTCCATTTTCTGCATACACTGAATAAATGG 35389 29 100.0 32 ............................. TTTTTTCAAGTGGATTATCATCGTACTTATGG 35450 29 100.0 32 ............................. CATCATTCCAAATTCATGCAGAAAAGCATTCA 35511 29 100.0 32 ............................. GTATCGTGAATGTTCACTTTCGCTTGTACCAT 35572 29 100.0 32 ............................. CAAAAGAGCGGTTCGCCGATGCTATTATCAAT 35633 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : TATACTGAAAAGTATTTCAACGAATTGGAAAGAAGCTACTTTTATAAAAAAGAATAGAATGTATTCCAAAATATGCAAATTTTTATATAAATTTGTCTTCCGTGGAGTATTTTCCCCGTACCTACGGGGAACATGGAGTTATAATCAAGGAAATTTAAAGGAGCTATGGTTTATTCCCGTATTAACGGGAAACATATTCACATAATGAAGGAATGTGAATGTTCCAATCCTTTATCTTCTTCTTAAGAAAAGTATATATAGAATTGCTATCTTAGCCATATTTGACAGAAATAGTGATTCAGAGCGAGGTAAATCACTGTAGGTATGTCTCTGTTTATTACTCGCCACCTTTATACCTTCATTTATGTGATCATAAGTAACCTAATAATCAGTAGTAGGTAAAAAATAAAAGGAATAATTTAGCTGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAAATATCTTATAAAACAGATGGATAAAATTAGAG # Right flank : GGAACGCCTGAATATCGTCAGCGCAGGAGACTCGTGAAGCGATGATACCACGAAAAAAAGAAGTGACACGCCTTATATCGCCGCCCGCATTGGGCGACAGTTTTTGCTACAAAAAGAAAAAGCCCCGAGTTCAAAACTCGGGGCTTATAAATTCTGGCGGTGCGGACGGGACTCGAACCCGCGACCCCCGGCGTGACAGGCCGGTATTCTAACCAACTGAACTACCGCACCGCGTGGTGTTCTGGTTGAGAACGGGACGGATGATACGAGCTACAGTAAAATCCGTCAATCGCTTTTTATAACAAAATGGTTTGTTTGCGCAGTTTTTCGCCTCAATAATACATTTCCTTCCATTTTGTGACTATTTTGTTAGTGAATCTGTTCGGATTTCGGACGCCAAAGGCAACTTCCTCCTTTCTTCTCCACTAAGTCCAGGCGGGATTCATGCTGGGTTAATTCTTCATCAGATGCGTAAATCACTTTCAACCCAACCTGAGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 446-4487 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUUN01000123.1 Xenorhabdus nematophila strain SII-2019 AliXJ-1_scaffold123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 446 29 100.0 32 ............................. TCAGAGATGACTAGTTTTTTAAATGTATTGCA 507 29 100.0 32 ............................. ACGACGTAAAACAGGATTATGACGCCGGGTTT 568 29 100.0 32 ............................. CAGGAGCAAATCAAATGAGATATCTGACATTC 629 29 100.0 32 ............................. ACAGGACAATTACTTTTGCTACCGGCCTTGAA 690 29 100.0 32 ............................. CGGTTTCAGACACTGGACATTGGGCTTTGACA 751 29 100.0 32 ............................. GTTGCAAAACTCCTTGATTCTGCTTTGGAAGG 812 29 100.0 32 ............................. AAACGTATTAACGCAATAGTTAATATCTCTTC 873 29 100.0 32 ............................. AATAAGAGAGCCGTCAATTTCGTTTGGTTTAT 934 29 100.0 32 ............................. TTCTCTCATTCTGGATTTAACCAGTTCATACC 995 29 100.0 32 ............................. GAAGGCATCATTCCAATAACGCACGATGATCA 1056 29 96.6 32 ............................T GATTAAATAATATTTTAAAATCGTGAATAACT 1117 29 100.0 32 ............................. CGTTCGGAATTTTACTCAGCTACTACGCTCAT 1178 29 100.0 32 ............................. CAAATTTGTTTGGTGCTGCCCTGTTTCATTAA 1239 29 100.0 32 ............................. TTAGTTTACAAATTTGTGGGCTGTTCCACTAA 1300 29 100.0 32 ............................. GTCTGTAACCGCCTAAATCCACTTTTTCGGTG 1361 29 100.0 32 ............................. TGTTTCTTAGGTGGTCTTATCAGAATCCCATA 1422 29 100.0 32 ............................. ACATTAATCAGGCGACGGGAAAGAAATCGATG 1483 29 100.0 32 ............................. ATAATTTGACTGCGAAAGTGTTTGTGATGCCA 1544 29 100.0 32 ............................. AAACTGGATGATAGATATGGTGAGTCATGGGA 1605 29 100.0 32 ............................. GCCCCGGTAAAATTCATTTTAATTGCCGCTCA 1666 29 100.0 32 ............................. CATTGAGCTAGCTGCTGGAGTTGGCTGTTGCA 1727 29 100.0 32 ............................. CGATAGATGAGTTTGATTTTAGTGTTGCTACT 1788 29 100.0 32 ............................. AGATTACCAATCTTTATTGTAGGTTTCATATA 1849 29 100.0 32 ............................. GTGTATGGCTGCTTTCAACATCAAAGGCCAGA 1910 29 100.0 32 ............................. ATGGCGCTAATTACACTATTCCCATACGTACA 1971 29 100.0 32 ............................. TGAACTGATTGGCCTGTCCTATGATACCTATA 2032 29 100.0 32 ............................. TTAACTTAAATTAATATCCATCGAACAGGCAG 2093 29 100.0 32 ............................. GATAGACACAGAGTCGCTGGAATGTTTGCGCA 2154 29 96.6 32 ............................A ATGAATGCCGCTTTAACGGCCAAATTAAAAAC 2215 29 96.6 32 ............................A TTTAGAAATGGCGTAAACCCGCCAGAGCAGGC 2276 29 100.0 32 ............................. CCTTGTTAGCACCACGAACGACATAGACTGTA 2337 29 100.0 32 ............................. ATTACTAATCAAACAGACGGGACGAGTTTTAT 2398 29 100.0 32 ............................. TCTACACGATGAATGCAGGTAATTTGACTATT 2459 29 100.0 33 ............................. AAATATTGCAGCGGGCTGAATGGGATAGAAAAC 2521 29 100.0 32 ............................. GTGTTGCTCAGACGTTGGGTGTCGATCCTCAT 2582 29 100.0 32 ............................. ACATACTCCCCCTCTTTTTGGTGAAATTCTCG 2643 29 100.0 32 ............................. ATGGGAAACATTCCCCTTTATCATTAGCATTG 2704 29 100.0 32 ............................. GTCTCATCCCTGCCCACTCATGGGGGTGTTAT 2765 29 100.0 32 ............................. TGTTTACTACAAAGTCTTATACCCCGTGGATG 2826 29 100.0 32 ............................. TAATTTGCCGTAAAACAATGTCCGACTGTTGG 2887 29 100.0 32 ............................. TAACTTTCCTCCTGGCTTTCTGTATAGGCATT 2948 29 100.0 32 ............................. GAAATTCGCTCTTTAACATTACCGGAACAGAT 3009 29 96.6 33 ............................A GGTCACCCGGTATTTTCTGCCCTGATAAATCAC 3071 29 96.6 32 ............................A AGGTGAGAATGCAGAGCGGTTAATTCAGGCTC 3132 29 96.6 32 ............................A GTGGCTGACCTTTCAAATGGATATACGAAGGT 3193 29 96.6 33 ............................A GAAACGCTTAGCTTCTTCTGCCGGCAACCTATC 3255 29 100.0 33 ............................. GATAATTGATAGACTCAATAAAAAAATGTCTAA 3317 29 100.0 32 ............................. TGATTAGTGATGGCTGGGTTTCAAATACGTTT 3378 29 100.0 32 ............................. CCTATATGCGCCCATACATTATTCAGGCCATC 3439 29 100.0 33 ............................. CAACTTTATGGGGTAAACACATGGTCAACGGTC 3501 29 100.0 32 ............................. GCCGCCTCAGCGACCTCCGATAATTTGGTGGA 3562 29 100.0 32 ............................. ACATCATTGCCTTTCAGCCCCCACTCTTTAGC 3623 29 100.0 32 ............................. TTTTCTGACAGCGCATTAATAGCACTGGTGGC 3684 29 100.0 32 ............................. TTTGCCCTCTTTTTTCTGACCCCCATCTCTCA 3745 29 100.0 32 ............................. CCGTTCATTGATCCGGCGTTTGAGTCCAGGGT 3806 29 100.0 32 ............................. ACATAGAACGAATTGATTCAATGATCGCAATA 3867 29 100.0 32 ............................. GCGCCAGCGGTTTTCCATCCGGTCCTAATATT 3928 29 100.0 33 ............................. CCTCCTGTGGCCCCCAATGATAAAAATACGTGA 3990 29 100.0 32 ............................. CGAGCCGTAGAAACGTATGACCAAAAACCGGA 4051 29 100.0 32 ............................. CATGGGTCAGTTTAAATGGGGACGTGATATGT 4112 29 100.0 32 ............................. GCAGAGCATAATGAAATTTCACAATTAATTGT 4173 29 96.6 33 ............................A GAAAAAGCCCGGATAGGTGTGGCCAACAGAGCA 4235 29 82.8 134 .................A...CG.G.G.. TGAACGTTTTTTAAGCTTGAATTGTATGTTATGAAATCACATATCGGGCAAAAATACCTCAGAATGGTCTTGTTAAGGCATTGCTTAGTATTTTATTTGCTCTATTTGATCAAAAATAAGCCTTTCATGCTCTC C [4251] 4399 28 82.8 32 ACC..-G...................... CTTACGGCGGTATTGCCAGCGGGGCGCAGATT 4459 29 86.2 0 .............A.....A..C....T. | ========== ====== ====== ====== ============================= ====================================================================================================================================== ================== 65 29 98.8 34 GTGTTCCCCGTAAGTACGGGGATAAACCG # Left flank : GCTTTCGGACGATACGTCCCTCTGCGTATTCGCAGGATAAGATTGTGAATATTCCCATCAAGATGTTCACCGTAAGCGGCTTTTGTCATGCGATCAATACCTACCGCTTTATTCCCGTCAAGCCGCAGGAACTGTCCTTTCAACATGTCGCTGTTCAGCAAATGCCCTAAGTTATTGAACACCTGCTGTTTGTTATCTGCTGATTTCTTGCTTATATGAAAGCGTTCTCATTTTGGTTAAGGCTAACAGGTTATTTTGCGATTGCTGCGATAGGTGTCTTAGAATTTGATAAGCCAAAATGAAAAATATGAGTGAAATGCGATCTGCATTGCAGATAGTGATTCAGGAAAAATAAAAGAGATAATTTAACGGATTTATTGGCTGAAAAAATGGTAGAATTTTTATGCTCTAAAATTATCTTATAAAACAGATGGATAAAATTAGAG # Right flank : CCACGCTGCATCTTGAAATCCATTGGATATAGAACTTTTTACCATATTTGAGGAAGATCGCAAAAATTACTCGTAATGTAGTTTAACTCCAAACTTCCTCATACAAGTTTGGGGCTAAACATTCAGGCTGTTAAAACAGAAAAAATAAAAACTACCCACGATAATACAATATTTAATAGCTTATTTATTTTAGCTAATCTGAACATTAAGGTGAAATATGATGATGGAAATACAATAATCATAAAACAAAAATACATCAAACTCATGTTTCTAAATAGCTGTTCCTAATATTGCTACACTTTTGCTGTGCCATGTTTATTTCCTGGGAATGGGCTAACCGTGTTCATAAAGCCACGCACTTTTCTCAATAACTGCCACATATAACAGCAACAATGAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTAAGTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTAAGTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //