Array 1 367399-368647 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGY01000002.1 Aerococcus sanguinicola strain UMB0139 ERR1203654.17957_1_66.2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 367399 29 100.0 32 ............................. CAGCGTGTTTTCTGGGTACTTGATAGGGGTTC 367460 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 367521 29 100.0 32 ............................. CTTTTCGTTTCCGATGTTTATCTTTAAGGCAC 367582 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 367643 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 367704 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 367765 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 367826 29 100.0 32 ............................. CGATTTGTGGATGTGATTAATGATTTGCTGGT 367887 29 100.0 32 ............................. CATCGAGCCAGAGAGGATGTCCTTTTTTCTAT 367948 29 89.7 32 ..........................TAG ATCCATAAGCTCCCTCATTTCTTTGGACAGAT 368009 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 368070 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 368131 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 368192 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 368253 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 368314 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 368375 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 368436 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 368497 29 96.6 32 ............C................ GACGGCCACTATAGCTATGATATTGCGATTTT 368558 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 368619 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 96.6 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : TATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 159729-160612 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGY01000003.1 Aerococcus sanguinicola strain UMB0139 ERR1203654.17957_1_66.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 159729 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 159790 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 159851 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 159912 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 159973 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 160034 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 160095 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 160156 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 160217 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 160278 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 160339 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 160400 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 160463 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 160524 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 160585 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 15 28 98.1 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TTACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //