Array 1 878556-867959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065751.1 Moraxella osloensis strain FDAARGOS_870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 878555 28 100.0 32 ............................ GCCTTCTGACGTAGTTTGTTGGTTTTGACAGA 878495 28 100.0 32 ............................ TGCTGCTGGTGCTGGCTATGCAATTGCTGGCT 878435 28 100.0 32 ............................ GATGAGCTCAAGGCGATTTTGACAGAACGTAA 878375 28 100.0 32 ............................ ACTGTCCTGTTTCGACATCGGCAACATAAAAA 878315 28 100.0 32 ............................ ATGCAAAAACAGTTTACAAAGCAACTGGGCAA 878255 28 100.0 32 ............................ AACTGCTCAAGCTGCTGGGTGGTCGTTTGGTG 878195 28 100.0 32 ............................ GTAAGAAATAGCCCCACGATTACCCCAAGACG 878135 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 878075 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 878015 28 100.0 32 ............................ GCCCACGTTATCGACTTTATCACCAACGCCAA 877955 28 100.0 33 ............................ ACTTGGTCGCCAGTGGCTACAGTTTTATTGTCA 877894 28 100.0 32 ............................ TTGATATGTCATTGGGTGAGTGCAAACAATAT 877834 28 100.0 32 ............................ AATTTATACAGGTGAAGAAAATGACTAATAAT 877774 28 100.0 32 ............................ TTTATCACCCCTTTATCATAACTGAAATAGAA 877714 28 100.0 32 ............................ ACAGCGACAACGACGACGACGACGCAGGAGGA 877654 28 100.0 32 ............................ TCGATTGGTTAACCTTTACCGTTCATGACACT 877594 28 100.0 32 ............................ TTGCTCTGTAACCAACGTATTACTGCTTGACT 877534 28 100.0 32 ............................ GTCAAAGATGACGCTTCTATCAAATTGCAAGC 877474 28 100.0 32 ............................ AACAAACCCACAAATAGATACATCATCAATCA 877414 28 100.0 32 ............................ TTATTTCTATCCAAATTAATTTTATTTGATTT 877354 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCACGTCCAGATTAA 877294 28 100.0 32 ............................ GCTTGAATTCGGACGAAGCCTTGTTGCGGCTC 877234 28 100.0 32 ............................ GCTTGATATCACGTTAAAACGAGTTGTAGTGA 877174 28 100.0 32 ............................ CGCCTGTTGGCTCTATCTTTATGTATGATGAA 877114 28 100.0 32 ............................ TATCCCCAGCGACAAGATTTTTTTCGGTAAGC 877054 28 100.0 32 ............................ TTTGAAAATACAAGCATTTATTATTTCCGCTT 876994 28 100.0 33 ............................ GCTCAAGATTAAACTCTTGATAGGTTTTTTTGC 876933 28 100.0 32 ............................ ACCCACAGCATCGACTTTATCTCCAACGCCAA 876873 28 100.0 32 ............................ AAACAAGACCAGATACAATATAACCAGCAATG 876813 28 100.0 32 ............................ TTGCCATGTCCGTTAGCGGCAGTAACTAAAAT 876753 28 100.0 32 ............................ ATTTTTATCATGGGATAATGGGGAATTATCAA 876693 28 100.0 32 ............................ GCTTTGCTACTGACATCTATCCATACCTGAGT 876633 28 100.0 32 ............................ AGTAATAGGTTTTGTTCATGCCTTGTCATGGC 876573 28 100.0 32 ............................ ATTAACAGATTAACGCCTATCATTGCCATATT 876513 28 100.0 32 ............................ TAACCAAAAATGGCTATCCCTCGAATCTGTGG 876453 28 100.0 32 ............................ CTACATTATCTAAAACGACTTGATTAGTTTGG 876393 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 876333 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 876273 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 876213 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 876153 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 876093 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 876033 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 875972 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 875912 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 875852 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 875792 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 875732 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 875672 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 875612 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 875552 28 100.0 32 ............................ ATTGTCTATAGCTTGCTGTATAGCTTGATTGA 875492 28 100.0 32 ............................ TAAAAAAAATTACATAAAGAAAAATTTAAAAA 875432 28 100.0 32 ............................ GTAAAAAAAATGCCTAACAGCGTAAACCGTTA 875372 28 100.0 32 ............................ AACAAATACTAAATAATGCAAAATCAGGTGAT 875312 28 100.0 32 ............................ AAATCCAATCATGAGCCGTCATAGCAATACCC 875252 28 100.0 32 ............................ ATGTAGCGCACGGCTGCTTTGTTGCGGATTTC 875192 28 100.0 33 ............................ ATCACCCAATTACCTAGCTAAAGATAGCGGTCA 875131 28 100.0 32 ............................ GTATATTGCAAGGCGCAAGATATGAAGAAGAT 875071 28 100.0 32 ............................ ACAGAGCCACAGGTCAAGCGCACCAAAGCCGA 875011 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 874951 28 100.0 32 ............................ ACAGCGCAAGAATTGATAGTAATATCTCATCT 874891 28 100.0 32 ............................ CAAATGATTTAGGGCGAAATTGGGGGTTTAAC 874831 28 100.0 32 ............................ AACCAAAACACCGCCTGTAAATAGAAGTATTG 874771 28 100.0 32 ............................ TTGATAGCCTTTTTGTCTTTGCGTAACTCATT 874711 28 100.0 32 ............................ GCTATTAGCCAAAATACTAATGTGCATATCAA 874651 28 100.0 32 ............................ CTAACGTGACATTGTAGGTATAGCCATTAACA 874591 28 100.0 32 ............................ ATCATGACCGCATCAGCCATATTTGGTGATGA 874531 28 100.0 32 ............................ CATACCGCTAACTAGCGATGTAAGGCTGTCAG 874471 28 100.0 32 ............................ GCAAGTACAGCCGAAACCAGCAGCAGCAGAAC 874411 28 100.0 32 ............................ TATCGGCAGTGGGGCGGGCTTGACACAGTTAC 874351 28 100.0 32 ............................ CCGAGCGGTCTAACTTGCTCAAGCGTGGTAAT 874291 28 100.0 32 ............................ TAGACTCAGCAGAAAACCCACTGCAAAACATG 874231 28 100.0 32 ............................ ATTCAAAATCACATAAGGAAAGGTAAGTGCGA 874171 28 100.0 32 ............................ GCTAACAGATGGCAGCGATGTTTTGAACTTCT 874111 28 100.0 32 ............................ GTCAGCATCAATAACTGCGCTTTCGTAATTAC 874051 28 100.0 32 ............................ ATAATTGATAGCAGACACGAGCCGTTCAGTAT 873991 28 100.0 32 ............................ CATAGCAGATACCGCAGACGCAGGCACTACAG 873931 28 100.0 32 ............................ TTGCCCGCCCATCACTGGCGCGTGCATATTGA 873871 28 100.0 32 ............................ TTTACTGATTAATACGCTAGAGAAATGCTTTA 873811 28 100.0 32 ............................ GAAGAAGATTTAATGAAATCTTGGGTTAACTG 873751 28 100.0 32 ............................ TTGCAGGACTTACCGTGGCGTTATTAGCCCAA 873691 28 100.0 32 ............................ GAATTGGTCAAGCGTGATGGGTAGCGGCGGCA 873631 28 100.0 32 ............................ GCCAACGTCTTTTACGGCATCTTGTACGCCCA 873571 28 100.0 32 ............................ CTTTTTTTGGTCATGTTGTGCGCCCACTTCGA 873511 28 100.0 32 ............................ AGTCACGATGAGCGTGTACGCCATGAACATAA 873451 28 100.0 32 ............................ AAGACAGGTTTAATGCCACTACTAACGCCACA 873391 28 100.0 32 ............................ AGTCCATTGCCTGATAGATCATTAAAGTAATA 873331 28 100.0 32 ............................ CGACAACGCCAAAGCGCACGATGTCGGGCGTT 873271 28 100.0 32 ............................ ATGGTAATGACGCAGATTTCGAGGAGTTGAAA 873211 28 100.0 32 ............................ GTGCAAAATTTACAGGTCATTAAAGAGCTTGC 873151 28 100.0 32 ............................ TTCTCGAACAATAGCCACATGGTCAGCAACCA 873091 28 100.0 32 ............................ TGTACCGCGGCAGACTCGGTTAAGTTAAACGC 873031 28 100.0 32 ............................ CTGTCTCATCTTTTAGCTTGCCTGCGCCGTCA 872971 28 100.0 32 ............................ AATAACCATGAAAACCTTGGCAAGTTTCCATG 872911 28 100.0 32 ............................ TATTAGGTAAAATCACCATATAGGTATAAATT 872851 28 100.0 32 ............................ CCCACGTATTAAAGCGGATAACGTCTTGCACT 872791 28 100.0 32 ............................ CCACAAGCATAATAGACGCAATCGGGCGGCTT 872731 28 100.0 32 ............................ AATCAAGGGAAGTTAAAGCAATGCCAGTTATT 872671 28 100.0 32 ............................ GTGATGGTAATGACGCAGATTTCGAGGAGTTG 872611 28 100.0 32 ............................ GCCTGACAAATCCATAAACTCAGTAAACTTCT 872551 28 100.0 32 ............................ AGCATGACGATGCTTTTCAAGACTTTTAACCC 872491 28 100.0 32 ............................ AATCTATAAAATCACAAACCTTTGAAGCCCAG 872431 28 100.0 32 ............................ CCGAACATCAGCACCAACGCCAGTTACTTTAT 872371 28 100.0 32 ............................ GCAAAATCTCACGAACAGCCCATTGACCCTTA 872311 28 100.0 32 ............................ AACAAGTGCTGATATGCTTGCTATTACTGGCT 872251 28 100.0 32 ............................ AAACAACTTGACTAGTTTGAAGTAAGCTAACA 872191 28 100.0 32 ............................ ATTGCGTTACAACTCGTCAAGACCGCGCACCC 872131 28 100.0 32 ............................ CAGTTGATATCTGGGCGTAATTCTTCTGCGGT 872071 28 100.0 32 ............................ GCCAACGTCTTTTACAGCTTCACCAACCCCGA 872011 28 100.0 32 ............................ AGAAGAAGAACCTATGAAACCAGTTAAAAATG 871951 28 100.0 32 ............................ AACAACTGCATCGCCAACTTTATCAACACTAT 871891 28 100.0 32 ............................ TAAAGCGCATTTGCAGAATCTTGTTCAAGACA 871831 28 100.0 32 ............................ TATACCAGGGCTGAAAATGCTTTTTCGTTTTA 871771 28 100.0 32 ............................ ACTCAAAACCGCCATCAGAATCTGGTGGAAAA 871711 28 100.0 32 ............................ ATCAACGGTGCCGAAAACTTTGCCACCACCAT 871651 28 100.0 32 ............................ ATCTAGCCAACTTTACCCCATGTCAATTAAAT 871591 28 100.0 32 ............................ AGTCTTGAATTTCTTGAGAACGCTCTAAACGG 871531 28 100.0 32 ............................ TTGTACCAACAGTGGCTAATGTGGATTAACTA 871471 28 100.0 32 ............................ ATCATACAACTAAGCGTCCTTGCTTCCTGTGG 871411 28 100.0 32 ............................ CAAATCCAAAAAGTTTGAAACCACTTGTTATT 871351 28 100.0 32 ............................ CCCCTGTTCCTGCTGTCCCTAACGATGGGGCG 871291 28 100.0 32 ............................ TTAAACGTGGCTTTAATAACGCCAATTTATCA 871231 28 100.0 32 ............................ GATGTCCCCGCTTTGTGATTTTTTATCTACGT 871171 28 100.0 32 ............................ TCATAAGCAGTAGGTAAGATTTTTCGAGTATT 871111 28 100.0 32 ............................ TGTTTTAGATTATCTCGCTAATGTGCAAGCTG 871051 28 100.0 32 ............................ AATAGCATCAATTATATCAGTAGGGTCAAACG 870991 28 100.0 32 ............................ AGCGATTGCACCGCCCACGATACCTTTTGCGA 870931 28 100.0 32 ............................ AGTCGCTCCGTTTTTGTTCGCTACAATGAGAA 870871 28 100.0 32 ............................ TTGATGAAAAGACGCTCGCTCTGGTCGAACGC 870811 28 100.0 32 ............................ CAAACCAGTTAACACAACAGTTAGAGCCGCAG 870751 28 100.0 32 ............................ TAGCATTTTTGCTAGTTCTTTTTGGTCGCCTG 870691 28 100.0 32 ............................ ACTAATCATGATTAATACAGTGCCATTTTGAC 870631 28 100.0 32 ............................ AAATGCGCTATCCCTGCCATATCACCGAGAAA 870571 28 100.0 32 ............................ CATTCAAAGATGGTAAGCCAAAAGTATTTTAT 870511 28 100.0 32 ............................ TGCGCCAGACGATTGGCACGACTTACCAAATA 870451 28 100.0 32 ............................ GCAAAGATTGACATTCGGATTTTCGCTAAGTT 870391 28 100.0 32 ............................ AACAGGCGCAGTATTTGAACGATTGAATTTCA 870331 28 100.0 32 ............................ TATCAATCGCTGAATTTTGCCAGTCTGTAGTG 870271 28 100.0 32 ............................ AAAATCGACGATAGCAAACACACGCTTGCGTC 870211 28 100.0 32 ............................ TAAAATGGGGCAAAAATACGCAAATACGATGG 870151 28 100.0 32 ............................ TTTAGCCGCCTTGTAGCGCGTTAAAATCGCAT 870091 28 100.0 32 ............................ TAAAATCATTGACATGGCTATATCAATGCCAG 870031 28 100.0 32 ............................ AAGTTGGCGCAACGGTACACACGGCAAACCAT 869971 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 869911 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 869851 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 869790 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 869730 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 869670 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 869609 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 869549 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 869489 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 869429 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 869369 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 869309 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 869249 28 100.0 32 ............................ AACCTTGGATGAAATGCGCTCAATCTTGTTTC 869189 28 100.0 32 ............................ ACCAAATAGCGCTCAGCGATATCTGGGTAATC 869129 28 100.0 33 ............................ CTGCCCCGCCACCTCAAGCGGATTTACACGATG 869068 28 100.0 32 ............................ ACAAACGATCCGTAATGCTAAAAAATATGTGT 869008 28 100.0 32 ............................ ATTATTATCTGATGGTGAAAAAGGCTGTTGAA 868948 28 100.0 32 ............................ ACCAGCACGGAAGCGGTCAGTTTCCTTAACAT 868888 28 100.0 32 ............................ AAGATCATCTTGTTTATCAAACCAATAAATAT 868828 28 100.0 32 ............................ ATCATGAAAATGCACCTATTTAAATCCAATGA 868768 28 100.0 33 ............................ GGCAGAGAAGACTATGAAGGGTTTGACCCATCC 868707 28 100.0 32 ............................ AATTAGATATCATCGCCAAGCATCAAATGGAA 868647 28 100.0 32 ............................ ACCATGCCCATGCGATGTTTGCAAAAACTATC 868587 28 100.0 33 ............................ AATAAAGTCCGTGGTTTTGACTTCTTTTAGCCC 868526 28 100.0 32 ............................ AATGCCAACAAAAACAGGACACCCATCATGAA 868466 28 100.0 32 ............................ AGCAACAGCGGCTAAAAGAGCAGGCATTTATA 868406 28 100.0 32 ............................ TTTTCCATGACCGTTAGCGGCAGTAACTAAAA 868346 28 100.0 32 ............................ AGCAGTAACAAGGGTAAAACCGATACTTGCAA 868286 28 100.0 32 ............................ TTCTGGTGGTGGGTGTTCTGGGTCGTCTTGTT 868226 28 100.0 32 ............................ TGAATATGAAAAGTTGTTTCAACAATATGCGA 868166 28 100.0 32 ............................ GACAACCTTGCCGCCAACGTCTTTTACCGCAT 868106 28 100.0 32 ............................ GCCAACGTCTTTTACAGCATCACCGACCCCGA 868046 28 100.0 32 ............................ TGTCGACATTCAAACGCCAGAACTACCGCAAA 867986 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 177 28 100.0 32 GTTCGCCATCGCATAGATGGTTTAGAAA # Left flank : TCGCTGGGCAAAGGTATTATATAAAAGCTTGGCGGAAGGCTGTGGCTTTAAATTTACCCGCGAGGAAGGCAAAAATGCCAATGATGATATCGCCGATATCGCCAATAGCTACCTTGACCACGGGAATTATATCGCTTATGGCTATGCGGCAGTTGCATTACATGGGTTAGGTATTAGCTTTGCTCTACCGATGCTACATGGTAAAACCCGCCGTGGTGGTTTGGTGTTTGATGTAGCAGATTTGGTCAAAGATGCGATGGTGATGCCACAAGCATTTATTTCGGCAAAACTGGGGCATAATCAAAAAGAGTTTCGGATGCAACTTATCGAGATTTGCCAAGACCAAGATGTGTTGGATTATATGTTTGGCTTCGTTGTAGACACTTGCCAAAAAATTAAATAAAATCAGATGCTTATAAAAAGCACTTTAAAACGAAGTGTCTTAACTGAATTAAAACGTATATAATTGATATCTGGGGATTTTGTCAGAAAATTCTCCA # Right flank : CATGAGCTTGATTGATATTGTTCATGCACCCTACTAAATTTTTCTAGTATATATCTACTTTGCATTTTTTTCGTCAATATTTCTCATTTTTATACGAGATAGTCCTAATCTAAAGTTAAGGTAAGCAATTTAATATATTGAATTTTTGCTTATGTATTATTTTATTAGTATGTGGATTTAGAGTCGTACCGTGAAAACTCAAAACTTTATATAGTCCGTATAACAACTTTTGTATCTATTTTTCCAATCTCAAGACGGTTAACTAAACTAGTGTGTCAATGTCTTAAAGTTTCTAATAGCCATGTTTTTAATTTGGAGGGAATAACTTTGAAAGGATTTTTTTTAGGGCATGAAGGTTTTTTAAAATGAGTGATTAAAGTTGAAAGAAATAAATCCAGTTTCATCTCTTTTAAATTCGGGTGGGGGTCAAAATCTACTTGCCCAAAAATTAACCAAGGCACAATTTGGGCACAAAATGGGCACACAAGATTTCTAAGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCATCGCATAGATGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGCCATCGCATAGATGGTTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 906095-900603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065751.1 Moraxella osloensis strain FDAARGOS_870 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 906094 28 100.0 32 ............................ GTGTACCGTCTTGATTACTCTGACGGCGAATA 906034 28 100.0 32 ............................ GTTAGCAAAAGTTTGAGTGATAATCCCGTCTA 905974 28 100.0 32 ............................ ATTTTCGTCAGGCTTTATGCGTCTAACGTCTA 905914 28 100.0 32 ............................ TAAATAATCGGTTTTATAGTTACCTTCAACAG 905854 28 100.0 32 ............................ ACGAATTACAGCTATACAATGCGTTTTGTCAT 905794 28 100.0 32 ............................ TGATATCGAAGGTACGCCAGTTCCCACGGATA 905734 28 100.0 32 ............................ AGTATCATCAGCGACCCAAGCTATGAAGATGA 905674 28 100.0 32 ............................ TTAAGAGATTAAAAAGCATAAAAATAAAAGCA 905614 28 100.0 32 ............................ TAGGATTTTTGGTATTACCCCTAAACGTGATT 905554 28 100.0 32 ............................ TGCAAAAACAGCGCGAGGTCTTATATACCAAC 905494 28 100.0 32 ............................ ACTTGTGTTGTCGACCGCAAAAATCATGCTGT 905434 28 100.0 32 ............................ TGTAGCGGTTTAAATCGGCTGTTAGCTTGATA 905374 28 100.0 32 ............................ TGCATATTTTGTCGCATCGCCAACGGCTGTTA 905314 28 100.0 32 ............................ ATCGCTTAGACTGCAAGCCAAGTAGTTCGAAG 905254 28 100.0 32 ............................ TAAAACAGTGATTGCGCCCAATACTGCGCCAG 905194 28 100.0 32 ............................ ATTGACAGCGTTATACTCCAATGCCGTGCTAA 905134 28 100.0 32 ............................ CTTTTAATTTGCGGTTAAGGTCATGAGTGACT 905074 28 100.0 32 ............................ TAAGCTAACTACACACAGGAGCGTTATCATGC 905014 28 100.0 32 ............................ TGTTTCTGCAATCTCTTTAGAATTAGCCTGTT 904954 28 100.0 32 ............................ TCAAGTGTGCTGGCGTCACCACTTTTTCTGTC 904894 28 100.0 32 ............................ ACAGGTACAGCTTACCGCTTTGTATCCGATAT 904834 28 100.0 33 ............................ ACGCTAGGTGTTTGCTCACTGGTAAGCTGTCCA 904773 28 100.0 32 ............................ TTTTTTGTTGTCTGAAATTTAAGGATTGAACA 904713 28 100.0 32 ............................ AGTCTTTACCCCAGTTAAAGCGTAGCGGTGCA 904653 28 100.0 32 ............................ GCCATCACAGGCGGTTTTTTTATGGGCTAAAA 904593 28 100.0 32 ............................ TGCATTTCAATGAGCCTATAATCATAGTCTAG 904533 28 100.0 32 ............................ CATCAATATTCACCGATACTCATCAATACTCA 904473 28 96.4 32 C........................... ACGAAGCGAATACCACGGCTTGTTTATCGAAA 904413 28 96.4 33 C........................... TTGTGCGCTTTGTCTTTGCTAAACTCCCAAACT 904352 28 96.4 32 C........................... CAATCGGGTGCGCCTTTGAATACGTCTTGTGT 904292 28 96.4 32 C........................... GTAGTGGCTGGGTTCGTGATAAGCACAGTCCG 904232 28 96.4 32 C........................... GATACGAGTCGTTGGCAGTAAGTCATAAGTAA 904172 28 96.4 32 C........................... ACGTTTGGGGCTGGACTTATCGAGAGATATCA 904112 28 96.4 32 C........................... GAAAAGGTCATGATTGACGCAGGTGGTTGGCG 904052 28 96.4 32 C........................... ATCATGCACCTGCGCTATGCTAGACAGTCTTT 903992 28 96.4 32 C........................... AAAGGCTTGGTGAGTGGTTTAATTCATCACAC 903932 28 96.4 32 C........................... AGCATGACGAGACCAGATGCCACATTCCTTGA 903872 28 96.4 32 C........................... ATCAAGTTTTATTGAAGCTGCTTGTAACTGAC 903812 28 96.4 32 C........................... ACAGTCAAACCGCGTTGAGCATAAACATTTTG 903752 28 96.4 32 C........................... TTTTTCGCCTTGCTCATAGATAAATGTTTTTT 903692 28 96.4 33 C........................... AGGCATAAAAAACCCTGTTAGCGTGAACTAACA 903631 28 96.4 32 C........................... ATGCGCCCACTTAATGCTTTATTCTCATCCGC 903571 28 96.4 32 C........................... ATAAAAGGGCTGTCACCTTTGCCTGTACCACT 903511 28 96.4 32 C........................... AAATCGGGGGAAGGCATGAATACTGGCTTTCA 903451 28 96.4 32 C........................... GTTTCGGGAGAAAACAAATCTTCCCGATAATA 903391 28 96.4 32 C........................... ACAATGAAGTATGTTATTCGTGTGCTTGAGCG 903331 28 96.4 32 C........................... ATCAGGCTTTACAATCACAATAATTTCCAGCT 903271 28 96.4 32 C........................... TTCCCCCGATTTGGGGACACGAATAAAATCTA 903211 28 96.4 32 C........................... TATAACAAATAGCTGCCTAATAAGTTTTGTAA 903151 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 903091 28 100.0 32 ............................ ATTTGCGTTGCAGGGTCTTGGATAATTGACAA 903031 28 100.0 32 ............................ GACAAAGTTATGACGCTGACAGTATGGCAGAG 902971 28 100.0 32 ............................ TATAACAAATAGCTGCCTAATAAGTTTTGTAA 902911 28 100.0 32 ............................ GATATCACCGTCCCACTGTGCGCCACTGACAA 902851 28 100.0 32 ............................ AAAGGCTGGTCGATGAATGGTACGCGCTGCCA 902791 28 100.0 32 ............................ AAGATACCGCAGACAGTCTAAACGCACTTATA 902731 28 100.0 32 ............................ AGTCTGCTCAACCTTACTATCAACCTTCTGCT 902671 28 100.0 32 ............................ AAGCATCGCATTTTATGTTGTCGTGAAGTGCA 902611 28 100.0 32 ............................ AATATCACCGTCCCACTGTGCGCCTGATACAA 902551 28 100.0 32 ............................ ACTTTAGTTGTGGTGCAGCATCCGCAGTTGCC 902491 28 100.0 32 ............................ ATTGCGCTTGATAGTTTTAATACCTACAACTT 902431 28 100.0 32 ............................ ACCGTCAAAAAACAGCAAAGGTGAGCTACCTA 902371 28 100.0 32 ............................ AAAGCGTAAACCAAAACGCTCGATACTTGCGG 902311 28 100.0 32 ............................ TTAGCGAGTTTCTCATAATGCACAGTATCGAA 902251 28 100.0 32 ............................ GCATTAAACACCGCGCAGAACGTGGTGCAAAA 902191 28 100.0 32 ............................ TAGCACTTTGTTTGTGCAGACAGTGGACGGCA 902131 28 100.0 32 ............................ GCCAAGTCTAAATGCTTGTAGTGCCAATTCTT 902071 28 100.0 32 ............................ AGTCATTGATGAATTGTCGAAATCCGACACCG 902011 28 100.0 32 ............................ TGTACCTGTGCCGCCAATAAAAATCACGTTTG 901951 28 100.0 32 ............................ AACAAATATCCACGCCTTCAAACGATTTGATA 901891 28 100.0 32 ............................ CTTAAATTCGCAAACAGCAAGAGGAGCCCAAC 901831 28 100.0 32 ............................ TAGTTTTTGAGGCTAGGCTATCATTGCAAAAT 901771 28 100.0 32 ............................ TAGACTGTGGGGTTTTTCTTGCGCTTTGAGTT 901711 28 100.0 32 ............................ TATAGTGACGCTACCATCCGCATTAACTATAT 901651 28 100.0 32 ............................ TTCAACATCATCGTCATCTATATTAAATAACT 901591 28 100.0 32 ............................ ACGCCTATTGCAAAGTTGTCGTACTCGGTCAC 901531 28 100.0 32 ............................ TAAAAACTCCTCAATCTGCTCAATCTGCATAT 901471 28 96.4 32 .............C.............. ATTATCTGTAGTGCTAGAGTGGTCTTACCTAA 901411 28 96.4 32 .............C.............. TAAGCGTTGGGATGGTAACGCATGGGTTGAAG 901351 28 96.4 32 .............C.............. TTGCCCCAGCGCATGTGTCGTTTGCCGAAATG 901291 28 100.0 32 ............................ GTTGGGTGAATGATGGATATAATCTGATAGCG 901231 28 100.0 32 ............................ GCTCGCTATCTCGCAAATAACTGGCATTGCTT 901171 28 100.0 32 ............................ GACAGCAAAAACAGCCAAGGCAGTCACTTTAG 901111 28 100.0 32 ............................ GAGATTGAATTATCCAAAGCCGTAGAGCCACA 901051 28 100.0 32 ............................ ACCACGCAAAACACCGATGCTCACTGAGCCTT 900991 28 100.0 32 ............................ TTAACGCGCTCGGTCTTGCGATACCACAACTC 900931 28 100.0 33 ............................ TCATGGCTTGTTCAAGGTTCTATATCAATCTAT 900870 28 96.4 32 .............C.............. TTTTGATGAACCCAATGAGGACGGTAAAGTTA 900810 28 96.4 32 .............C.............. TTATAAAAATGGTTGAGATTGATACCGATTTT 900750 28 96.4 32 .............C.............. TATATGCAATATATCGTAAAATTTTAAACTCA 900690 28 96.4 32 .............C.............. TTACGAGTCTTTGCCAACCTCATTTACTGGCA 900630 28 75.0 0 C.........G........A..G..TCT | ========== ====== ====== ====== ============================ ================================= ================== 92 28 98.6 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAGGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAACTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAGAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCG # Right flank : TAATTAGTAAAACCGTAAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTGAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACACTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAAGTCGCTAGACCAATCTACCCTATTTGATATTAATGTACTTTAATACTCAAAGCTTTGATACGAGTGGGTTTAACTAAGCTTACAAGAATAACATTAATGTGATTTAATGACAATTAAGAAAATTATCTTGCAGTTTGGTCACGCAATATTGCGTGTTTTTAACCCCCACTCTTCTGATGTTTTTGATGGATAAAGCTCAAATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //