Array 1 38287-36417 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841629.1 Ralstonia solanacearum strain RD15 scf_21624_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 38286 29 100.0 32 ............................. GTGATGCTGGGCACCGACAAATACGTGGCCGG 38225 29 100.0 32 ............................. CGTGTGGGCAAACGCCTGTTCCTTGTGCAGAA 38164 29 100.0 31 ............................. ACGCGCTGGTCGAGCGCGTCGGCGCGCTGCT 38103 29 100.0 32 ............................. GTTAGTGCTGGCCAATTGATCGGCGCAACAAT 38042 29 100.0 32 ............................. CTGCCGCACGATAACATCATCCGCAACTTGCC 37981 29 100.0 32 ............................. AGACTGACCTGCTCGTCGAACTCGGGACTGAG 37920 29 100.0 32 ............................. GCGGCGAGCTTGGCGATGCGATCGTCCAGCTC 37859 29 100.0 32 ............................. GAGAGCCGCCCAGGTAGGCGATGATCGCCTCC 37798 29 100.0 32 ............................. CGAGGGCTGGATGGCCGGTGTGCAACTCGCTG 37737 29 100.0 32 ............................. TCGATTTCGACTTGGCTGACGAATGCCAACTA 37676 29 100.0 46 ............................. CCGTTCGGCCCGGCGATTTCGGTGAAGCCCGCCGGCGAGAAGTCGA 37601 29 96.6 31 ............................C TCGGGCGCTCTCCGCAATCTCGGCATCGAGC 37540 29 100.0 31 ............................. TCGCCGCCGCGCTGGTGAAAGCCGGCATCCC 37479 29 100.0 33 ............................. GCGCATCGAGAACGCGCTGAGGTGCATCGTGAT 37418 29 100.0 32 ............................. GTGAGCGTGCAGCCGCCGCCGCGCGGGAAGTG 37357 29 100.0 32 ............................. CCGCCAATATCGGAAACATCTCGACGCTGGGT 37296 29 100.0 32 ............................. CTGCCTGACTTCGATGACGACGCTGACAAGGT 37235 29 100.0 32 ............................. GGGCCCGTCATCTGCATCGTGATCGATGTGGC 37174 29 100.0 32 ............................. GTGGTGTTCGGCGCCTTCACCAGCACGTTCGC 37113 29 100.0 32 ............................. CGGCTTTATATGCCGGCCGGCAGCTGCTACAT 37052 29 96.6 32 ............................A TCGCAGATCATCGAGGACGGCCCGCTCCACAA 36991 29 100.0 28 ............................. GTGGCCAGCATGTCGCTCGCCAGCGCGC 36934 29 100.0 31 ............................. CCTCTGAGTATCTCGGGCTGCTCAATCAGAC 36873 29 100.0 32 ............................. GCGGTCCAGAACATTACCCAGTTCGCGTCGGA 36812 29 100.0 32 ............................. TTGATGCGGGTCAGGAAATCGCTCGACTCCTG 36751 29 100.0 31 ............................. CTGCGGCACCTCGACCATCGGCAGTTCTTCC 36689 29 100.0 32 ............................. CCGCCCGTGGCCTGCCAGCACGTCGCCATCGG 36628 29 100.0 32 ............................. CTGCCGGCATCGCAGGCAGCTTTATGCAGGAA 36567 29 100.0 32 ............................. GAAGGCGATACCCTGCTGCTGAACCTGCCGGA 36506 29 100.0 32 ............................. CCGCGCGAGGTCTGGGCGGCCGAGTTCCGCGA 36445 29 89.7 0 ........T.........A..G....... | ========== ====== ====== ====== ============================= ============================================== ================== 31 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATTCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGTACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGTGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GGTTAGTCGCTGAAGCTTGTCCAGATGGTCGTGTACTTCCCGCGCATTGCGGGGATACCCCGCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGCAGCCACCGAGCCTTCCAGCGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTGGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGCGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATGTCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48978-47664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV841629.1 Ralstonia solanacearum strain RD15 scf_21624_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48977 29 100.0 32 ............................. TCGGCCGAGATTTCACGCGCTCTGGCGTATTC 48916 29 100.0 32 ............................. CCCTGCTGATCGCTTATTACGGGAGCAAGCAA 48855 29 100.0 32 ............................. TCGGCCGGTCTAATCGAGATGCCGTACTGGGA 48794 29 100.0 32 ............................. TAGTGGCGGCCGCCGTGCAGGACCATCGGAAC 48733 29 100.0 32 ............................. CAGTCGATCGCCACTCCATGTGCGCCTGCAAA 48672 29 100.0 32 ............................. CTATGTGAACCACTATCTTTTCTTTCTTTTAT 48611 29 100.0 32 ............................. TTTTCGCATGCTCTCTCCTTACGCTAGCTCAG 48550 29 100.0 32 ............................. CCGATCGACATGCTGTGGATCGCCGGCTATTT 48489 29 100.0 33 ............................. CTCGATGCCACCAGGCGCTACGATTTTGAAGAG 48427 29 100.0 32 ............................. ACTGCAACTGCCGCTGCCGTCGGCGTGGTGCT 48366 29 100.0 32 ............................. ACCCGGAATCGAATGGAACTTGAGATCCAGAC 48305 29 100.0 32 ............................. GAACCGACTGCATCGTGCATCTGCGTCCCGAG 48244 29 100.0 32 ............................. CGTTCGAGCTGGCCGATCAGGAAGGCGCCGGT 48183 29 100.0 32 ............................. TTCGATATCGGCGACACCGTGGAGGCGCGGGG 48122 29 100.0 32 ............................. AGCGGAGCCGATCTGGATTCGTGGGTGACCGA 48061 29 100.0 32 ............................. GGCGGGCGGTTCGGCGGCGGGTTCGCGCTGAA 48000 29 100.0 32 ............................. TCGCCCGGCGTCGGCACGGCGGCCTTGACGAT 47939 29 100.0 32 ............................. GCTCAGCTGGAGGGCATTCGCACTCTCCATCG 47878 29 100.0 32 ............................. CTTCATGGGACTGTCAGACGCTGGAATCCCGA 47817 29 100.0 32 ............................. AACTCGATTGAGGCGTACGGCGCCTCAGGCAA 47756 29 93.1 32 ............CA............... CCCATGATCTGAAACAGGCCCCAGCTCGCCGA 47695 29 86.2 0 ............CA..........T...A | TC,A [47667,47671] ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.1 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCGATCGACGACCTGGAAGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCGGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGGCGGGTTGGGTACTTTGTCGACTGCGTGAGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGACGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : ACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAACCAAAATAAATACCCGCGAGACTGCTACGATCCCCAGCTCGGGAGCAGGCACAGATCGTCAAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGCGTCGCAATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGTTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGCCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //