Array 1 1170290-1168249 **** Predicted by CRISPRDetect 2.4 *** >NC_015760.1 Streptococcus salivarius CCHSS3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1170289 28 100.0 33 ............................ CAACACAGCCGGTGGCGGACGCTCAACCAGCAG 1170228 28 100.0 33 ............................ CCAAGTAAGTCAAGGTTTTGAAGATACCAAACA 1170167 28 100.0 33 ............................ CAGACGCAAACCGAAGCTTCTCAACCTCAACAA 1170106 28 100.0 33 ............................ CACTAGAGAGCTGTTCCGTTTGTACAATGCAGA 1170045 28 100.0 33 ............................ CTGATTTTGCTATCAGTCTGAGTGATTGCGGTA 1169984 28 100.0 33 ............................ CATAGACCGGCAGCAACAGAAGCAACTGTGAAT 1169923 28 100.0 33 ............................ CGGATCGGGTGGATACAGCCCTGGAAATCTAGA 1169862 28 100.0 33 ............................ TGGTACAGAAACCAGACGGTATTTTTGGGGTTT 1169801 28 100.0 33 ............................ CAGATAACGACATCATTCAATTTGCAGAAGACC 1169740 28 100.0 33 ............................ CAAGTTCTGGCAGGTTCTTCAAACGCACTCTAA 1169679 28 100.0 33 ............................ CGAAAGTCTGAGGGTAAATATCTAACTTTAGGC 1169618 28 100.0 33 ............................ CAAGAAAAGTCTGAACAGGAGTTGGATAAAGCT 1169557 28 100.0 33 ............................ CATTTTTGCTAATTCAAGTTGACTAATGCCCTT 1169496 28 100.0 33 ............................ CGATTCTGAGCCAAAAGAGGCGGTAAATACAGC 1169435 28 100.0 33 ............................ TCAAGCATCGCACGCATGTACCATCTACAATCA 1169374 28 100.0 33 ............................ TACAAGCCAGTTAGATTTCATTTAACCAAAAAC 1169313 28 100.0 33 ............................ CGGTTAAGTGTAGAAAGATAGACAAAATATAGG 1169252 28 100.0 33 ............................ CTATCGACATAACCCTTACCCATGTGTTTCTTA 1169191 28 100.0 33 ............................ CGCAGTTTTTGACCAAGCCGAACTTTACGGGGA 1169130 28 100.0 33 ............................ TAGTTAGGGAATGCTTGGAAATCTATTGGGTTA 1169069 28 100.0 33 ............................ CCAAGTGCTCGTTTACCAAGGACTTTAGCACCC 1169008 28 100.0 33 ............................ TCCTTGCTAGACAATGAAGACTGGACAGATTCA 1168947 28 100.0 33 ............................ TCCACATCAGTCACAGCATCAATCTTTTGGCCA 1168886 28 100.0 33 ............................ TACAGTTAACAACCTTACTCAAGATCAAGTAGC 1168825 28 100.0 33 ............................ CGTTCTAGCAAGCAGCACCAACTTTTCTTGGTC 1168764 28 100.0 33 ............................ CGCTTGACAGTGGGCGTCTAGCTCTGCACGCTG 1168703 28 100.0 33 ............................ CACGAAAGCGACCACCGAGGACAAGCCAGCCTT 1168642 28 100.0 33 ............................ CCCTCGGTTAAAGTAGAAGTCGTCTTTTAGCAA 1168581 28 100.0 33 ............................ CCGGTAGTCATCGCCTTTAGCCCCCATAGCGAC 1168520 28 96.4 33 ....................A....... TACGGATGCAAATTTTGACAGCATCTTCAAAAT 1168459 28 89.3 33 ........T.....T..A.......... TGAACCTGTTAAACCAGAAATTCCATCTGTAAG 1168398 28 92.9 33 T...................A....... TAGTTTTACGTCCTATCTCATGTACTTCTTCAG 1168337 28 89.3 33 .C.................A...T.... TAGACTTCTTCGCTAGATGACGATTTACTTGTT 1168276 28 75.0 0 ..........T...T.T.A.TA....T. | ========== ====== ====== ====== ============================ ================================= ================== 34 28 98.3 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATTATTGAGATTGGAGCAGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTCTAAATTGACAGGAATTTCTAAAACCTTATTAGATAAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTATTTATTGGTGATTTAACTATAGTCGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTAGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGAATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGGCATATGGGATCGAGGATCAAGTTCCTCATAGAGCGTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTTCATTGGGACCTTTTAGT # Right flank : TATTAATTAGGAAACGCCTGACTTTAGCTAACAGTATGGTACAATTTAATTGAATTAAGAGTGAATTTTTTGTTTTTTTATGGAAAATAATCAATTTACATTTATCCTATAGTTAATTGTTTGCACGTAGATCAGATGTAATCAAGGATTGTTATTGCTCGATTTGAGAATAGGAGCATTTGTTATTATCTCTAATTGTACAATTGTTAAAAAAACAATTAATCTATTTCGGGAGTTTTAAAGATTGTAGATATAGAAAGTAGTAGTTTGATGGAGAAACAAACAAAAGTTTAATGCTATCGAATGACATATGATTATGGCATTAATCCGTTTGTATTTACTGAAGATTATGAATCCACACCAGATTTGTTGACTGAAGATGGCTGTATGATTCAATACGGCAACATCTAAAAAAGAATTGGGCTGATAGGATTAATTCTGGTGGTATTGATGCTTATATAATGGCAATTGCTAGGCATTCAAATGATGGTGGTAAGTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //