Array 1 120780-123399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042392.1 Loigolactobacillus coryniformis strain CBA3616 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 120780 32 100.0 35 ................................ ATCGTTATTAGCCCCATAATCACCAACAGTAACGC 120847 32 100.0 35 ................................ ACTCAGTGGCTGCATATAGCCAACCGCACCGTAGC 120914 32 100.0 37 ................................ ACCCCCTTATGTAAAATGCCGTGGCCGAGTTCGTGAC 120983 32 100.0 33 ................................ AATCAATCTGAGAGCGATGCAAAGGCTTTTGTT 121048 32 100.0 35 ................................ AGACTGATGCGGCAGCAGAACAACGTGTAGATGAC 121115 32 100.0 34 ................................ AATCCCCACACCACGAGAGTGTAGGGACTGAAAT 121181 32 100.0 34 ................................ TTTTTCAGCTCTTCATTTTCTTCTCGGAGCCTAT 121247 32 100.0 34 ................................ ATACCAGCATGAGACTGTACCATAATCCGTAATT 121313 32 100.0 36 ................................ TTTTCGAGCCATTCGCCATGGTTTGGATCAGCAATG 121381 32 100.0 34 ................................ AACATCTTGAGCTTGGCCATTGCGGACGATAAAA 121447 32 100.0 34 ................................ AGTTTCTGACGTTCTTTCGTTTTATCTTGACGAT 121513 32 100.0 35 ................................ ACCATTCTTAAAAAAAGACAGGGAGCTCTCGTTAT 121580 32 100.0 34 ................................ GACATAGGTAGCGAAAGAGGACGTTTAGTCGTAA 121646 32 100.0 34 ................................ AAGGACGCCATTATCGAGCTGCCAGCTTGCCAAG 121712 32 100.0 35 ................................ AGTTTTATGACACCTGCCGCACGCCTGACGAGATA 121779 32 100.0 33 ................................ TGCTACGATCAAATACCAATTTGACACCGTCAA 121844 32 100.0 33 ................................ CCAAACGGGATTAGAAATTGAAATACGGCTTGA 121909 32 100.0 34 ................................ AATTGTTTCATGTTCCATGATTTGAGCGAGCTTA 121975 32 100.0 35 ................................ CTCCTGTGATGCAGTTAATTTGGTTTGATATTCTT 122042 32 100.0 35 ................................ TCTTAAATCCTCGCGAATTGCGATAGCCTCTTCCA 122109 32 100.0 33 ................................ ATCACGTTTGGATATCTTTTACTAGTGAACAAA 122174 32 100.0 34 ................................ ATGTTCAGCATGGCAATACACAGATAAGTTCAAC 122240 32 100.0 34 ................................ AAAACTACCAACCAACATTTTAGCAGTACTACAA 122306 32 100.0 34 ................................ ACAAATATAGAATATAACAATAGCACTCACTCGC 122372 32 100.0 35 ................................ GATTAGATACGATCCAGCGGGCAATTCGCTAGAAA 122439 32 100.0 34 ................................ TTTTCAGGCTGCCAAATTAGTCGGTACAAGCCCC 122505 32 100.0 35 ................................ AATGCCAAATGGTTCCCGTGTTTATGAAAAATGGA 122572 32 100.0 34 ................................ TTTAGTTGAGAATTAATAATTGGTTCAACAAATT 122638 32 100.0 34 ................................ AAAGTTGTTTAAATAATGTGGACTATAAGCAGTA 122704 32 100.0 33 ................................ GTTCAAGCCGAGGGCGTAAATAACCGTCACTAG 122769 32 100.0 35 ................................ ACTTTTTCCAGCACCAACTTCGCAGCAGTCATCAA 122836 32 100.0 33 ................................ AATCTTATTTGCTTGCTCTTCTGCGGATTTAAT 122901 32 100.0 34 ................................ GTTATCTTTGATCATTTTGAAAACCCCTTTGCTT 122967 32 100.0 35 ................................ ACACAATTTGCACGGTAAAGTGTTTAAAGCATACG 123034 32 100.0 33 ................................ GGTGGTTGCCGCCATGTTTTTTACCAGGCAAAA 123099 32 100.0 34 ................................ TATGCAAAATGCCCCAACTGAAATCATTTGTATG 123165 32 100.0 35 ................................ GACAAACCTTTATAACGCAAATTTGGCCGTTGTTT 123232 32 100.0 35 ................................ ACTGAGACCAAAGCGATGCAAGCGGAACTGGATAG 123299 32 100.0 37 ................................ AGCCTTTCGGGATCGTTTAATCCACTGAAGGGCCAGA 123368 32 93.8 0 ..........................CT.... | ========== ====== ====== ====== ================================ ===================================== ================== 40 32 99.8 34 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : GATCTGCTTTTGTATGTAATATCTGACCATCAAATGTCAATAAGTTATCCTGCCATGCCTGTTCAATATGGATCAACGCCCACTGCCGCTGACAAAATCGAAAATGCTGAATCCCCGAGATCATCAAAAAGTCATCCTCAGTATATTCCAAATAAATCATCCCATTAATTATTTTAAAATAACAAAGTACTTAAGAATATAGTAGCAAGTATACGGCACTATGTAAACGCTTATATTTGCAGTACTGCTTGATTTAATTATTTACTTAACATAACTGGCACCGATGCAATAATGATGATAAAATTTCAATGATAGCATTAATTACCTTGGTAAAAGATTTACAAAGTGCGAGTGGAAAGTGCACATACTTTTTCAGTTTGTTTCGCACCTTAAATCACTGGTTCTTTTTTGTTTTATTGCACTTTATTGATTTTTTACTTTCCTAATTAATATTATCCACAAGATATAGAAAACAAATTATGTTAAAACTATATTTTGCA # Right flank : TTCCTACAAGTCTGTTAACACCTCACGATGATAGTCATTAGCCATAAAATATAAAAAAGGTTCATCATTGCCGTTGACCAGCAATGATGAGCCTTTTTCCGTATTCTAATCAAACAAATTACAAACCATCAATTTCACTTAATTCAATACCTTCAAGTGGTGCAACCGCAATCGTATAATCATCAATACTACGTGGATGTGCAACGCCGGCTTTAGGTGTCACGGTTACTGAACGGTGAACCTTGGCTGATGAGTATTTACCCATCTTTCCTGGATGTTGCCACCAGAATAATTTGATAACAGCCATACTGCCATCCGGACGTGCTGAGGAAGCATCATTTTCAAAAAGTGTGCGTAAAGCTTCTTTGATATTTTCCGCATCTTCTGTGGTAAAGCCGGTTTTTTCAGCTAGCTGAGTATTAATACTGCCGTTAAAAACATAAACACCAAAATCCACAAAATGCTTAGTGCCCATTGTATCGGAACCTTTAGTTGTACTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 129986-134275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042392.1 Loigolactobacillus coryniformis strain CBA3616 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 129986 32 100.0 33 ................................ CAACGGGTCGGCATCGTCATCAGCATCAGAATT 130051 32 100.0 34 ................................ AGCATTTGCATGTGACCCTTGAAATCGGTTAGTT 130117 32 100.0 35 ................................ AATTTCAGACATGGCATTAGTATTAATGTTACCAG 130184 32 100.0 35 ................................ TCCATCGTCGTTTTTGCCCCCATGAATGGAAACAA 130251 32 100.0 36 ................................ GGTACAGCTAGCCAGATCATCGACAAGCACAATAGT 130319 32 100.0 36 ................................ ATTCAGCCTATTAGTTGGGCAAGTGGCCTCAGGGTC 130387 32 100.0 33 ................................ ATTTTCAGAGAACCAAGTCTTAGCCTTATTATT 130452 32 100.0 33 ................................ ACCTGATGTATGGCTGACACTGCCAGATAAAGT 130517 32 100.0 35 ................................ ACCATAGCGACCTTATCAAATACAAAGGATGGTAT 130584 32 100.0 33 ................................ AACAGGTCGGTCTTGATTTCACACATACACTAT 130649 32 100.0 34 ................................ TAATGAAGATAGCGACAGATTAGCCGTCCAATTA 130715 32 100.0 34 ................................ GCAACGGACATGTAGCCTTGATCAACGTTGATAT 130781 32 100.0 36 ................................ ATTTGTTGGATAATCGCTTCCGCCAACTGTCTCATT 130849 32 100.0 34 ................................ CGGGTGAGTGGTTATAATAACTTTAGTTAGTTAT 130915 32 100.0 36 ................................ GCTTTGTAATACCTTGGTTGATTGTTTAAACGGGTC 130983 32 100.0 34 ................................ TTCCAAGGGAACTAACCAAGACACGGCGGATAAA 131049 32 100.0 35 ................................ AATGTTGGAAGGGTCTTTTTTACGCGATGTCGATA 131116 32 100.0 35 ................................ AAGCAATTGGAACTCCGATAACTATTACCTTTAAT 131183 32 100.0 35 ................................ CTCAGCCATGTTTTTATCCTTGCCTTGATTGGAAC 131250 32 100.0 33 ................................ AATCTCAACTGGAATCTACTCAAGTTGGATCAG 131315 32 100.0 34 ................................ TACCTCGATAAAATCTGTAACTCTTTCCAAAATA 131381 32 100.0 35 ................................ ATACGACTATCAAGGGTTAACCCCAACGAATTAGC 131448 32 100.0 36 ................................ GCTAGTTGATGGACAACCGTCGGCGCAGACCGCAAA 131516 32 100.0 34 ................................ CTGCCATGAGGATACTAATCCATAGTCAGTCCAC 131582 32 100.0 35 ................................ GCTTGTTGAGCTTGGTGCTATCCAGTCACGTGAAT 131649 32 100.0 35 ................................ TATTGTGGGGAACGAATACACTGTATTGTCGAGGT 131716 32 100.0 35 ................................ ATTATTGTTTAATCATCAGCACAACTACTGCTGCC 131783 32 100.0 37 ................................ ATGGAGTACAAAGGTAAAACAATGCTGATGCATTTTA 131852 32 100.0 34 ................................ AACACCTTTTAACCGCGAACTAGCTGATAAATTC 131918 32 100.0 39 ................................ AGTGGCAGTGATAACGATGCAATGCGACAAATCGGTAAC 131989 32 100.0 34 ................................ TTTTGACGTATAACCACGTTTAATTAATTCTTGA 132055 32 100.0 34 ................................ TACATCTTTTACTACATCCTGTTCTTTAATTACT 132121 32 100.0 34 ................................ CTTGAGTGAGTTTGATGATTGCACCTTTAGCCCC 132187 32 100.0 34 ................................ ATATCCACACCGTTATTTTTAAATGACTGTGTGA 132253 32 100.0 36 ................................ ACCTAATGCGTGAATTGTGTTATTCAGAATCTTATT 132321 32 100.0 34 ................................ ACAGCAAACATCGCGCCATTCCAAGCGGCAATGG 132387 32 100.0 34 ................................ CCACCATGCACGAGCGAGCACGCCAGTTGTTGGC 132453 32 100.0 33 ................................ GATGAAGGTATGAAGAAAATGACGATTGGTGCT 132518 32 100.0 35 ................................ CTTATTATTGCTGATAATTGGCTGAGTCGTCGTTT 132585 32 100.0 35 ................................ ATTGGACGAAACCTATAAACCGGAAACTTGGATAA 132652 32 100.0 34 ................................ ACCGTTGGATTAATATAGCCAGCACCCTTTTTGC 132718 32 100.0 34 ................................ ACTAAATTAGACATTTCCTGCGTTGCTTTCCAGT 132784 32 100.0 33 ................................ TTATCCTTAGCAGACATCATTTCCAGCATTTCA 132849 32 100.0 34 ................................ GTTCACAGGCAGGAGCTGGTTAATCAAATAAGAG 132915 32 100.0 35 ................................ TACAACGGCGAATGCCTTACTACAACCGACTGTAC 132982 32 100.0 34 ................................ TTACTAATGGTAAGTTGTTTAATCAGATTAAAGA 133048 32 100.0 34 ................................ AAAGTCGGAGCCGTCAAGTTTTACGCCACCTGTT 133114 32 100.0 34 ................................ TCAAGACCTTGCAAAAGGTGTTGGGAGCGTAGCC 133180 32 100.0 34 ................................ ACTTCAAGAACAAGAAATCACTGAAAGCATTCCT 133246 32 100.0 35 ................................ ACTTGAATCAAAGGCATAGCCTTCACAATCGTAGG 133313 32 100.0 34 ................................ CGATATGCAACAGACGGTAGACGGCTTTAAGACT 133379 32 100.0 35 ................................ CCACCATTTTAAACCTGAACAAGCAAGAAACGGAC 133446 32 100.0 34 ................................ GCAAGTGGGAGTGATTTATTTTTTAATCTGCCAG 133512 32 100.0 35 ................................ ACTTCCTATCATCATTCTAGTACCTATTTTGCTGG 133579 32 100.0 34 ................................ AACAGCCAAATTGACGCGATGGGGCCACTGCTCA 133645 32 100.0 33 ................................ CGCCATCCGGATCGCCCTCCATTTTATCACTAA 133710 32 100.0 35 ................................ ACCAGTTCTTCTTTACCTAATCCCTTTAGCACCGG 133777 32 100.0 34 ................................ CACAGCTGTCGACACACTCATGTGGCTTATCTTT 133843 32 100.0 35 ................................ ATCATCTAACATAAAAAATAGATGTTGGTCTTGGT 133910 32 100.0 35 ................................ AAGTCTGCCAGCGATTGTTCGTGTAACTTGAGCTG 133977 32 100.0 34 ................................ AATCATTTGTTGTACTTTATAAAACAAGTCCTCG 134043 32 100.0 35 ................................ CAGCTGGTGTCGCGGCAGGATCTCTGGCAGAAGTT 134110 32 100.0 35 ................................ CTTATAAGTAAGCGCACGAGCTTCATTCTCTTGAC 134177 32 100.0 35 ................................ ATGGTTATGCTAATGCTTAACTGTGGCTCCGTTAC 134244 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 65 32 100.0 35 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : ATCATGTAACAGTGCTGCTAATCCGGCCATATGACCCAAGTTTAATTTACGACCCAAACTTTCAGCAATCTTTTGACAATCTAATAAGTGATCCTTCAATAATTGATCAGGCTGTCGCTGATCGTTATCCATAAGCGGACCAGGATGAGCAATAAATTCCATTTCAGTCACTCCCTTTTTGATTTAATTATAAGTGATTTACAATTAAATCGTTACTAAAAATATATACTTAATTTGGCCAATTAATATATGGACCAAATATATCTGGTCACTTTTCTTTTAAGATGATAAAATTCTAGTGATGATATTGATTCAGTTCTCCACATCCATAATAGTGCGAACACCCAGCACACATAATTTTCTTGGGTATTTCGCACCATATTTTTTCCCTTACCTCTATAAAATATGTATTTCCTCTGTAATTTTCGATATATTTTTCCTCTGAGTTAATATTATCCACAAAATATAGATAATTCACTCATTTTTAGCTATATTTTGCG # Right flank : TAAGGACATGGGCCTAGAATAAAAAGTGTACAAGTTAAATAGAGACTCTGATTTAGTATAATTAAGGAAGTAAATTGGAGGATCAAATAATGACGAAGCACAGTTATGACAAGGAATTTAAGGAACAGGCCGTTCAGTATTACTTAGATAACAAGGATCACATGACCATGAATGAAATAAGTAAGAATCTAGGTATTGGGGCTAGTACATTACATAAATGGATTAAGCTGTTTACTGAGACTGGGGAGTTTGGCCGTGGCTCTGGTAATTTTGCCAGCGATAAGGACAAGGAGATTGCACGACTAAAGCGTCAACTTCGTGACGCTGAAGGAGCGATCGAAGTGTTAAAAAAATCAATCGGGATTCTGAGCAAGTAACTACCGAAAAGTTATACCAAGAATGGACGTTCAGCACGCTTTGGAATCCCACCCTTCCATCAATGGTATGTGTGATTATGTTGGAATCTCAAGAAGTGGTTACTATCAACGAGAAAAGCGTCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 724884-719581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042392.1 Loigolactobacillus coryniformis strain CBA3616 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 724883 36 100.0 30 .................................... TAACGAATTGCGTTAGTAACGGGTTGTGAC 724817 36 100.0 30 .................................... GACAAACGTGCTTTGACTTATCCATTGAGT 724751 36 100.0 30 .................................... GAAACTGGTGCGCATTCCGATCATAGCGAA 724685 36 100.0 30 .................................... TGGATTCAATGGTCACAATTAAAGTTTGAC 724619 36 100.0 30 .................................... TCTGATTGTGCACCGGCATTAAACTTATCT 724553 36 100.0 30 .................................... TGTAACGTCTGCTTCATCTTATCCCCAGTC 724487 36 100.0 30 .................................... AGCCCCTACCCGCCGGTAACGAGTAAGGGA 724421 36 100.0 30 .................................... TCGGTGTTGAGGGACAGACAACTCCTGGGT 724355 36 100.0 30 .................................... TACTTAAATCATTATGTGTACCATATAGAA 724289 36 100.0 30 .................................... AAGCCCACAGGAGAGGATTAATATGCGCAA 724223 36 100.0 30 .................................... GCGGAGTCGGACCTTAAAGGAGGTGATACG 724157 36 100.0 29 .................................... TTGGCAGAGCGATTTATGGCAAAATATGG 724092 36 100.0 30 .................................... ACTTAGATAAGTCATGTTTAAAGTTTCAGT 724026 36 100.0 30 .................................... CACTGTATGGCGTGATAAAGACCTGATAAC 723960 36 100.0 29 .................................... AACAATGCATTTGACCTTGTCCGGAAACA 723895 36 100.0 30 .................................... TGAATAGCTCCTTTTATTAATTTATTTTAT 723829 36 100.0 30 .................................... TTTTTTGTGTAGAAACTCATCAACATTTCG 723763 36 100.0 30 .................................... AGAAGGAGAACGGGTTTATGCTTTAATCGC 723697 36 100.0 30 .................................... TCTCTGATGTGGCAGCATCAACCTACTAGT 723631 36 100.0 30 .................................... TAGTTGATTCTACTTCTTTTTGCCACCTTG 723565 36 100.0 29 .................................... AAACAAGCTATCGGCGCCATGAAAACAGA 723500 36 100.0 30 .................................... ATGGATTATAAAGCATGTAATGCCGAAGTT 723434 36 100.0 30 .................................... CCAAGCGATTTTAAATCATCGCGAAATCCA 723368 36 100.0 30 .................................... TTATAAACCTGTGCATCTTGTGCACGCCAG 723302 36 100.0 30 .................................... ATTAGCTAATTTAACAAACAATAAAGTGAC 723236 36 100.0 30 .................................... ACCGGAAACACGCAGCATTCTCGGAAAAAC 723170 36 100.0 30 .................................... TTTTTCACACCTCTAAATTAATTTTTTAGC 723104 36 100.0 30 .................................... AATTCATTGTCTGGGATTGTGGCATTGCCA 723038 36 100.0 30 .................................... CTGCTCTTTACTTAATTTTTCCACCTATTT 722972 36 100.0 30 .................................... GTGACTCAATCACAAAAGGTGCACATTTGA 722906 36 100.0 29 .................................... GGATTCTTTCGAGCCCGCACTATTAGTCA 722841 36 100.0 30 .................................... CACATTAAAATCGTTCCACATTTATTATGC 722775 36 100.0 30 .................................... TGTCCGGATTGCTGTTGCAATAAATAATTG 722709 36 100.0 30 .................................... AACTGGGGCTTGCTAGGTGTTGTTGCTTTA 722643 36 100.0 30 .................................... GAAGTACGGCAAGGATTCATCACTTTGGGC 722577 36 100.0 30 .................................... ACAAACCTTTTGAAGGTGTACCTTTAGCCG 722511 36 100.0 30 .................................... TGTATCGTTTAAGGATCTATAGGAGGTGAT 722445 36 100.0 30 .................................... TCTGGATTCGCTTATTCATTTTTTTAAACC 722379 36 100.0 30 .................................... GTAGAATCTGATGTAGAAGTATTGGTTGAA 722313 36 100.0 30 .................................... GCTAATCTGAGATTTAACCTATTTGCACGT 722247 36 100.0 30 .................................... GCTAAGCTCAGATTTAAATTATTTACAATG 722181 36 100.0 30 .................................... ATAAGTTGGCTAGCTTGCTCGTTATACTCG 722115 36 100.0 30 .................................... CTGATAATAACGGACACCAACTAGTGGCTT 722049 36 100.0 30 .................................... GAATTTGATGTCAATAATATTGGTGAACTA 721983 36 100.0 30 .................................... CGTTTGTCTGGGGTCGCCGCCGTAAAGCTG 721917 36 100.0 30 .................................... ATTGCTGATTCCGCTGAGCCGCGAACAATT 721851 36 100.0 29 .................................... AGCCAATAAACGGTGGACACGGGCTATCC 721786 36 100.0 29 .................................... GCATTTTTTTGATGACTTTATTGAACTAA 721721 36 100.0 29 .................................... TCATCGGTATCAAACTTACTAGAGAATTG 721656 36 100.0 30 .................................... AAACTGTTCATCGTTTAAGTTAGGAACGTA 721590 36 100.0 29 .................................... CCAAATGTTCCAAATCCACCGACGATATT 721525 36 100.0 29 .................................... TTCGATGTACCGTTGTACTGCTGGTGTGA 721460 36 100.0 30 .................................... GCACCGGAAGCACAAACAACGAAAGTAGGT 721394 36 100.0 30 .................................... CCAATGCAACTGCGGCTGGGTTCGGTGATA 721328 36 100.0 30 .................................... TTCGCTCCACCGATGGATCTACAATAATTT 721262 36 100.0 30 .................................... ATAAGCCAACCGTCGCACCAATGCCCTGTT 721196 36 100.0 30 .................................... TACACTTTCAGCTGTAATATGTACGGCACT 721130 36 100.0 30 .................................... CTCGTAAGCTAGATTGATAGCTAATTAAGT 721064 36 100.0 30 .................................... ACTGTAATTGCGGAGCGGTGACATTATTCA 720998 36 100.0 30 .................................... ATGACCGACTACTACAAAGAACCGACTGTA 720932 36 100.0 29 .................................... TTCGTTCAAGTGCGCTTAGCGGCACATCG 720867 36 100.0 30 .................................... GAGAATGTCCGAATTGATAACACCACGCAC 720801 36 100.0 30 .................................... GATTATAGTGTTGAAGACGAAAATCCAGTA 720735 36 100.0 29 .................................... GATTCAACATTGGTCTACCTCTTAATTGA 720670 36 100.0 30 .................................... CGAGGTTTTCGAACTCTGTCTTGCTTCCTT 720604 36 100.0 30 .................................... GATTTACATTTAACCGGTACTCTATCTGCT 720538 36 100.0 30 .................................... TGGTTATTGTTGTAATCAATGTTTGTAAAA 720472 36 100.0 30 .................................... AAAGATTTATTGGACCGCGCTGGTTTTGCG 720406 36 100.0 30 .................................... GTGGTGACGCCTAACACGTTCACATTATTC 720340 36 100.0 30 .................................... GTGGTGACGCCTAACACGTTCACATTATTC 720274 36 100.0 30 .................................... GTCACTGTCAAATTGAAACATCAAAGTCTA 720208 36 100.0 29 .................................... CGTCCTATATTGTCGCAATAGCGTCCATG 720143 36 100.0 29 .................................... ACCAGTACGGCAAATAGCACAAGTACTCT 720078 36 100.0 30 .................................... GATGATATTGCTCGACAAGAATATTACAAG 720012 36 100.0 30 .................................... CAACTATCGTTTCAACGCTTATTGCCTATC 719946 36 100.0 30 .................................... ACGCCAGCGCTGTTTAGGATCACTACTTTG 719880 36 100.0 30 .................................... AATTCAATCAAAGGTATATCATCTGTCCCA 719814 36 100.0 30 .................................... CTGACCCTAACGTGGCATTTGGCTCTGGCA 719748 36 100.0 30 .................................... GTTGAAACTGTCGATGGTAGCAAACCAATT 719682 36 100.0 30 .................................... GCCTGAACCCAATTGGAATTGGAATCCTCA 719616 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 81 36 100.0 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : GGAGAATTTCATTCTTTGAGCAATGCAGTTCATAAATTAGTATCATCGTACACAACTTGTTGTCGTAATAACTCTGCCGCGGGTTTAAAGTTACCGGAACTGATTCCGCTGGTGGCGCACGAATATGAGTAGTAAGTATATGCGTTTATTAGTAATGTTCGACTTACCAGTAGTAAAGGCAAAAGAGCGTCGTGCAGCAGCAAAATTCCGGCAATACTTATTAGGTGATGGTTACGTGATGATGCAATATTCCGTTTATTATCGCATTGTTAATGGCTACGATATGGCTAAAAAGTATGAGCTGCGGCTCGATGATAATTTGCCCGAAAAAGGGTCAGTAAGATTATTAGTTGTAACAGAGAAACAATTCGATGAAATGCGTCTGTTAGTAGGTGATCCACTACCAAATGAAGAGAAACTAGATAGTGGACAGATGACCACTTTTTAGACAAGTAAAAGAGCCTGATATCCGCGTGATATCAGGTTCTTTTAGCATACTG # Right flank : TTTATTGTGTGTGGTGTTAGTGTGTCGAAATCCTTTGCTGTCAAATCAAAAATCGCTTTTTTGAATAACTTATCAATTATTGCAATTGTAACTCATTCGTATTCTGTTGCCGTACGTTCAGATTTTTGATTATCAATCCATGATTCAAAAATAGTACTAGTAGATCGCGTCAATTCAAGCATAATACGTTTTCCTCCTAAGCACTCGCCTATATTATCACGACTATATAGCCATGATAACTTGAAATAATATCGCAAATTGCAATAGTAAATTAGCCAGTACCGATAAAGCACACAGACGAAGGGCTCATGGGAGTTCCAGGTGGATCAGGATTAGGCGGCGCGGCCTTTGCGCGCACGTGCTAATTCCTTTCGAAATACTTCAGCTGGTGTACAGAACTTAAGTAAGCGGCGCGGGAGATGGTTGAGCCGAGATTCAGCTTGACGGACCAGACTGGGTGTAGCTAGATCGAGTGATTGCCCCTTAGGAAAGTAACGTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 731811-729596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042392.1 Loigolactobacillus coryniformis strain CBA3616 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 731810 36 100.0 30 .................................... TCTGCTACGGCTTGCTTAGTATCACTAACG 731744 36 100.0 30 .................................... ACAATAACTTTTGGCGATAAGGTAGGTGAG 731678 36 100.0 30 .................................... GTCGAGTTTGTTGCTCCACTTATTTTTAAT 731612 36 100.0 30 .................................... CGAGTAAATAATGATATTCTAAATTATTTT 731546 36 100.0 30 .................................... ATCGCATGGTTAGTCGCATGCAGACCTACG 731480 36 100.0 30 .................................... TTAGTTGCATTATTGACTGCTGAATTAATC 731414 36 100.0 29 .................................... TTGAAGATTTTGCGGATGTTAATAACCCA 731349 36 100.0 30 .................................... GCTGATTGATAACGACTTTCTTGCACCAGT 731283 36 100.0 30 .................................... TGTTTTGCTGGATCATCGCTATAACGTTTC 731217 36 100.0 30 .................................... CGGTTGCAGTTGCAGTTGCAGTTACATAGC 731151 36 100.0 30 .................................... GTTCACGTTGGCAAACTCTTTGGGGCGACA 731085 36 100.0 30 .................................... TAACCTGATAAATGATGCATCATTCGCAAT 731019 36 100.0 30 .................................... GTTACTTATTTGCTCAAGGTGCGGTTGGCT 730953 36 100.0 30 .................................... GCATGTATCACTTTGAAGACTACGGAATAG 730887 36 100.0 30 .................................... TATAGATTCTTGTACAGTGTACTTGTACTA 730821 36 100.0 30 .................................... CCTTACGGATTAGGCGAGTCAGCTGTACAG 730755 36 100.0 30 .................................... AATGTTGATACGCTAGTCCCAAGTCGTTGT 730689 36 100.0 30 .................................... ACATTTCAAGCAAACCGTCGGTGATTCCAT 730623 36 100.0 30 .................................... TCATAGGGATGCGCAGGGAACGTGGTTTGA 730557 36 100.0 30 .................................... GCGCTGGTCTTTTCGGGCATCATCCTTGTT 730491 36 100.0 30 .................................... CCCAGGCTTTCGGCTACACTGACTTTGGAG 730425 36 100.0 30 .................................... GCTGCAAACCAGTCATTGGGACTTTGCGTT 730359 36 100.0 29 .................................... CAAAAGCAGCGCTTTCAATTAATGTTTAC 730294 36 100.0 30 .................................... CTGAGAAACGGAAAGTACCAAGCTAAGGTT 730228 36 100.0 30 .................................... CGACTTGGGCGGTGTGATTGGCGGTGTTGG 730162 36 100.0 30 .................................... AATCGCATATATAAATCTATCCACCCTAAA 730096 36 100.0 30 .................................... CCGGTACAAGCAGCTAAAGGCGATTACGGT 730030 36 100.0 30 .................................... TATTTCTTGACCAACCAAGAGCTTTGCCCT 729964 36 100.0 30 .................................... ATACTTCTGCTGTTACTTTTGGCGATTGGG 729898 36 100.0 30 .................................... CGCTAAAAGCACCAGAAACTTTTTTAGCGG 729832 36 100.0 30 .................................... TTTCGCGTAACGCTGCAATAAGTTCCTCGT 729766 36 100.0 30 .................................... CAAAGGCAAGCGCACCGGAACCAATTAAGG 729700 36 97.2 30 .............................T...... AGCAGGCAATTGTGACAACAAAAAGCGGTG 729634 36 77.8 0 ...............G.....T..T....A..ATTT | A,TC [729603,729606] ========== ====== ====== ====== ==================================== ============================== ================== 34 36 99.3 30 GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Left flank : ATGGGGCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTGTTTGCTTAGAGTGCCTATGTATCAATGAATGAATTAATTATATAGACCAATATGATAATTAGTGCAAGCTATATACCTTTATATTGGATAAAACTGATTTGAAGTACTTTATGCTTATTTACGTTTACACTTGATTAAACATAAATAAATTTCAGAACTATATTTTATAGTTGAGCAATTATCAAAGGAATTGGAAATGCGAAGTGTAGGATTAGTTATATAATCTCATTATTTATGTGAATAGCAATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGCAATTTAGTACCACTAACTGTGATTTCTGGGTATTTTAGTCCGAACTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGCCCAGTATCCGTGTGATATCGGACTATCGCGGTGTACTA # Right flank : ATCCAATAATCAACTTTTGCAACCGGCATCATTATGCTAAACTGAAGTAAATTAAAGAGATGGAGTTGATACTATGGGCTATCGAATAGGCTTAGATGTGGGGATTACGTCAACTGGTTATGCTGTTTTAAAAACAGATAAATTGGGAACTCCATATAAAATTTTGACACTAGACTCAGTGATTTATCCACGAGCTGAGGATCCCAAAACTGGGGCATCACTGGCGGAGCCACGACGGGTGAAACGGGGATTGCGTCGGCGGACACGCCGGACTAAGTTCCGTAAGCAGCGAACACAGCAATTATTTATACATAGTGGTTTATTATCTAAGTCGGAAATTGAGCAAATATTGGCAACGTCGCAAACGGATCAGTCAGTCTATGAACTTCGGGTAGCGGGTCTCGATCGTCGATTAACTAATAGTGAATTATTCCGCGTTTTGTACTTTTTTATCGGACACCGTGGATTTAAATCCAATCGTAAAGCCGAGTTAAATCCAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTATTTTAGCTGAAAACTGAAGGAATCAATAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 5 1907630-1910227 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042392.1 Loigolactobacillus coryniformis strain CBA3616 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1907630 28 96.4 33 ...........................A ACTACCAGTTACATGGGGATGAGGCGTAAGGGT 1907691 28 96.4 34 ...........................G GGTAATTAACTCATCTTTACTCAAAGTAGTAAGT 1907753 28 92.9 33 ..........................TG ACGCAGGATGAGCAAGGTCGAACCTTAGTCGGT 1907814 28 100.0 33 ............................ CTATTGCACCGCTTATGAGATTTACCGTGAAGC 1907875 28 100.0 33 ............................ TCGAGCATGAATCCCAGGCGACACTATTCAAAG 1907936 28 100.0 33 ............................ CTAGTCGCAACTTTTAAAGATAATGAAAGGTGA 1907997 28 100.0 33 ............................ TGCGTTAATGCAAAGCAAATTGGCTATTTTATT 1908058 28 100.0 33 ............................ TGATGCCATGCTTTTTGCTGCGATGTTAGCAGT 1908119 28 100.0 33 ............................ CCAGGGGACCAAGCGTAACCAGGGGACCATGGA 1908180 28 100.0 34 ............................ CTTTATTGACTGAAAAGCGGTCAATAGATGGTCG 1908242 28 100.0 33 ............................ TACTACCAGCGCAATAGGGATGCCATTCAGTAC 1908303 28 100.0 33 ............................ CAAGGTTGACACTGACGACAATTATAAACAGAC 1908364 28 100.0 33 ............................ TAATCGTTTAGGCCGCGGTTAACATGGTAGGTT 1908425 28 100.0 33 ............................ CATACAAGGCGTTTCCTAAGTTGGGACTTAAAG 1908486 28 100.0 33 ............................ TACGTGATGCATCAATAGCTGGTCGATCAGCAA 1908547 28 100.0 33 ............................ TGCTCAGGATACCCAAAAAGTTTTAGCAGGAAA 1908608 28 100.0 33 ............................ TGAAATTCAAGATTGTGGGCCGCAACGGTGAAA 1908669 28 100.0 33 ............................ CATCAGAAAAAGGAATAAAAGCAACGGAAAATA 1908730 28 100.0 33 ............................ ATCAGTGAACTGAACGTGATGCTGCTTGTAAAA 1908791 28 100.0 34 ............................ TATGGCGACACCTTAGGCGGTATTGCTAACCGGC 1908853 28 100.0 33 ............................ TAGCTGCTTATTAATTAGATCAATGTCAAATTT 1908914 28 100.0 33 ............................ CACTGCCGGTCATTGTAAAGATTTTGTCTAGGT 1908975 28 100.0 33 ............................ CTTGGCGCGCCGCTATTATCAAACTGTGCAAAA 1909036 28 100.0 33 ............................ TTATCAATTAGTGTCCCTAGGTCGCCAGTGTAC 1909097 28 100.0 33 ............................ TATCCAGTAGCGGCTTTGTATTGCAAATCCTCT 1909158 28 100.0 34 ............................ TAATACGGCGCTCTTTGCCTTGAGCATTAGCTGG 1909220 28 100.0 34 ............................ CTTTTTTTTTCTGCTGCTGCTAAATTATTTCGAG 1909282 28 100.0 33 ............................ TTTCTGCAGCTAACAATACTCATGATAAAGTAG 1909343 28 100.0 33 ............................ CAAACCGTGGTTTCGTTGCGATTGCCCTCCGGT 1909404 28 100.0 33 ............................ CAGTATAAGGACACCGTTTCTGCAGCTAATAAT 1909465 28 100.0 33 ............................ TTAGCCAGCCTGCTGAGGGTCACCAGATCAGCC 1909526 28 100.0 33 ............................ TAAGCAATAAATAGGCATCTTATCAACTGTTAC 1909587 28 100.0 33 ............................ CGACTACTTTCCCAATGATACGTACGTTTTCAG 1909648 28 100.0 33 ............................ TAACTGTATTCCCTTGAGCGTCCTCAATCCAAA 1909709 28 100.0 33 ............................ CATTTTTGCCATCCCTAGCCACTTAGCTAGCAT 1909770 28 100.0 34 ............................ CTGTCGCCTACTTTTACCGTATAAACTCGGCTAG 1909832 28 100.0 33 ............................ CGGCATTACCAAGTTGGTGCCTGGTGAAAATTA 1909893 28 100.0 34 ............................ TTAGCAACCCGCTTAACAGTCGCCGCCGCGGCTG 1909955 28 100.0 33 ............................ CCAACTATAGAGCATATCGAGTCAACTGAGTTA 1910016 28 100.0 33 ............................ TAAATTGTCGTATTGTCTCATTAATACAGAAAG 1910077 28 100.0 33 ............................ CTGTGTGTGCGGCACCGATTGTCCAGCCCGCAT 1910138 28 100.0 34 ............................ TGCTTGTTGGGAGTAACATATATAGCGATATTTC 1910200 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================== ================== 43 28 99.6 33 GTATTCCCCGCACGAGCGGGGGTGATCC # Left flank : TCAAGATTCAATTATAGCCATTGGGGCAGTTAAACACGATCAGACAGGTAAAATAGAGCACATACAACAATTTATTAAACTTGGGCATCCGTTGCTCAAAGAAATCACAAAATTAACCGGTATTACAGATAGTAAGTTAGCAACTGAAGGTGTGGAGTTAGATAATGCTATGGAAAATTTTCGAGATTTTGTCGGAACATTGAAAATCGTCGGTTATAATATTAGTTTCGACCTTAATTTTATCAGACAAGCGTTACGTCAACTAGGCGAAAATAATTTGGTCAATCAGAGTGTTGATTTATTATCACTAATTAAGCAAATTCAAAAATTCTTGCCTAATTATCGTTTGGCAACTGTTCTAAAAAAATATAGTATTAATAATGAACAGGCACATGATGCGTTATCTGACGCACAAGCGACTATGTTGTTAGCGGAAAAACTCATTGAAAATGGGCAATTGGAGATTTAGAAATGTTAATTCTATAGGGATCGTTTAGTGT # Right flank : CCTTCAATTATAAGCTTGACGGGCGTGTTTTGTCGTATTTCTCGTATTTTCGGGAATGACTTTTGCGATTTGTTATGAGGGTCCAGCTAAATGGGATATTTATATACGCGTGGTGCTAGTTCGTCATAAAATCAAAAAAGCCTAAATTGTATACCAATATCGTCAATTCAATCTTTAATTGAAAACCAAATAGACTACGGGTGAGATTGGTTTCAATCCCAAATTGCTGGGCTAAAATTGAAAAGCGTGACTCTATTGTCCGCCGTAACGCCTTGAGTTGACGCTTATTATGCTGTTTAGCACCTTTCATATTAGAACGATAAGGCGTCCATAAGTTATAGCCTAGGGCCCTAAAACTGGTCTTGAGTTTTTTCCCAACATAACCAACATCGGCCAAAATATTGGGACAAGGACAACCGCTAATTAGCTCAGGCGCTACCTTAGCATCATGAACTGAGGCTGCCGTGATCACATAATTCAGAATATAGCCATTAGCCGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.00,-12.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //